Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Forward (+)

13593677 .. 13594803

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G105100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTTGGTGAAAACTCTTTTTCATCAAGTGACGATGCCCGGGATGATCATACTTGTGGTTTTAAATGCAACATATGCCTTGAATTAGCTGATCAGGACCCAATTGTAACACCTTGCGGCCACCTTTACTGCTGGCCCTGTCTATATAGATGGCTTCGTGTTTGCTCATCACAGTCAAATAAGCTCCAGTGCCCTGCTTGTACGACTGTCATTAAGGAGAAGAAGCTGATCCCTATCTATGGAATAGAATCAGATCGAAGATCTCCTTCTGTACCCCCCGGTCTTAAAATTCCAAATAGGCCATCTCCATCTTCTTCATCTTCAAATAGACGATCGGTTCGTCAAATCAGAAACGCCGTTGCTTCAGCTTTCAGTGCTCCATTTTCTTCATCTTCAATTGGACGAGCAGTTCGTCAAACCCTAAATGCCATTGCTTCAGCTCTCAATGCAAACCATTTTTCGAAGGTATTCGAATTCATGCCAATGGTGCTAGGTGGAATCGGAGTTGTTGTTCTCGTTGGGGGATACATTTGGTGGATTTGGGAACTGTGTGATCGTACCGTGGATTCTGTCAATCAAGTGTTGGATTCTGTCAAACAAGTGTTGGATGCTGTCCAACAAGTGTGTGATGCTGTGGAAAGAATACATTCTGAATCTATAAGGAAACCATCCAGTCCTTCCTGTTTATTAGGTGATGATGATTGGGATTTTGATTGCAATATTTGCTTTCATTTACCTACATATATACCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

252

Amino Acids

27.8

Weight (kDa)

6.57

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	288, 473
AcuI	CTGAAG	2 cut(s)	348, 420
AfaI	GTAC	3 cut(s)	202, 273, 559
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	83, 324, 396
AloI	GAACNNNNNNTCC	4 cut(s)	393, 425, 495, 527
AluBI	AGCT	5 cut(s)	89, 184, 226, 368, 440
AluI	AGCT	5 cut(s)	89, 184, 226, 368, 440
Alw21I	GWGCWC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	3 cut(s)	118, 134, 299
ApoI	RAATTY	2 cut(s)	288, 473
ArsI	GACNNNNNNTTYG	4 cut(s)	321, 353, 393, 425
Asp700I	GAANNNNTTC	2 cut(s)	467, 646
AspS9I	GGNCC	2 cut(s)	97, 135
AsuC2I	CCSGG	3 cut(s)	40, 41, 279
AsuHPI	GGTGA	2 cut(s)	20, 704
AsuII	TTCGAA	2 cut(s)	461, 471
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	379
BccI	CCATC	4 cut(s)	144, 310, 316, 676
BceAI	ACGGC	1 cut(s)	341
BciVI	GTATCC	1 cut(s)	518
BclI	TGATCA	2 cut(s)	46, 91
BcnI	CCSGG	3 cut(s)	40, 41, 279
BfaI	CTAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	518
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	3 cut(s)	40, 41, 279
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	97, 135
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	3 cut(s)	40, 41, 279
BmsI	GCATC	3 cut(s)	25, 598, 619
BpmI	CTGGAG	1 cut(s)	170
Bpu14I	TTCGAA	2 cut(s)	461, 471
BpuMI	CCSGG	3 cut(s)	40, 41, 279
BsaBI	GATNNNNATC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	39, 277, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	187, 672
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	39, 277, 561
BseGI	GGATG	3 cut(s)	49, 613, 668
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	187, 672
BseSI	GKGCMC	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	3 cut(s)	120, 136, 301
BsiEI	CGRYCG	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	40, 279
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	3 cut(s)	120, 136, 301
BsoBI	CYCGRG	1 cut(s)	39
Bsp119I	TTCGAA	2 cut(s)	461, 471
Bsp1286I	GDGCHC	2 cut(s)	194, 379
Bsp143I	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	3 cut(s)	120, 136, 301
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	223
BspT104I	TTCGAA	2 cut(s)	461, 471
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	187, 672
BssECI	CCNNGG	3 cut(s)	39, 277, 561
BssMI	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
Bst4CI	ACNGT	4 cut(s)	174, 208, 549, 562
BstAPI	GCANNNNNTGC	2 cut(s)	75, 723
BstBI	TTCGAA	2 cut(s)	461, 471
BstC8I	GCNNGC	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	3 cut(s)	49, 613, 668
BstKTI	GATC	7 cut(s)	49, 94, 231, 256, 263, 335, 556
BstMBI	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 374, 446, 487, 723
BstSCI	CCNGG	3 cut(s)	38, 39, 277
BstSLI	GKGCMC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	518
BsuRI	GGCC	3 cut(s)	120, 136, 301
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	3 cut(s)	49, 613, 668
BtsIMutI	CAGTG	2 cut(s)	194, 379
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	97, 135
Cfr9I	CCCGGG	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	201, 272, 558
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	9 cut(s)	89, 120, 136, 154, 184, 226, 301, 368, 440
CviKI_1	RGCY	9 cut(s)	89, 120, 136, 154, 184, 226, 301, 368, 440
CviQI	GTAC	3 cut(s)	201, 272, 558
DpnI	GATC	7 cut(s)	48, 93, 230, 255, 262, 334, 555
DpnII	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
DraI	TTTAAA	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	348, 420
Eco88I	CYCGRG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	473
FaeI	CATG	1 cut(s)	481
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	1 cut(s)	477
FauNDI	CATATG	1 cut(s)	74
FbaI	TGATCA	2 cut(s)	46, 91
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	3 cut(s)	56, 620, 655
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	120, 136, 301
HapII	CCGG	2 cut(s)	40, 279
Hin1II	CATG	1 cut(s)	481
HinfI	GANTC	5 cut(s)	248, 498, 566, 587, 653
HpaII	CCGG	2 cut(s)	40, 279
HphI	GGTGA	2 cut(s)	20, 704
Hpy188I	TCNGA	4 cut(s)	253, 350, 503, 652
Hpy188III	TCNNGA	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	276, 457, 687
HpyCH4III	ACNGT	4 cut(s)	174, 208, 549, 562
HpyCH4V	TGCA	3 cut(s)	69, 449, 717
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 374, 446, 487, 723
Hsp92II	CATG	1 cut(s)	481
Ksp22I	TGATCA	2 cut(s)	46, 91
Kzo9I	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
LmnI	GCTCC	2 cut(s)	189, 382
LpnPI	CCDG	9 cut(s)	53, 80, 118, 151, 200, 207, 292, 685, 694
LweI	GCATC	3 cut(s)	25, 598, 619
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	29, 106
MalI	GATC	7 cut(s)	48, 93, 230, 255, 262, 334, 555
MboI	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
MboII	GAAGA	7 cut(s)	232, 270, 303, 306, 312, 378, 384
MfeI	CAATTG	2 cut(s)	102, 396
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	194, 379
MluCI	AATT	5 cut(s)	83, 102, 288, 396, 473
MmeI	TCCRAC	3 cut(s)	564, 585, 640
MroXI	GAANNNNTTC	2 cut(s)	467, 646
MseI	TTAA	4 cut(s)	63, 213, 285, 754
MslI	CAYNNNNRTG	2 cut(s)	54, 482
MspI	CCGG	2 cut(s)	40, 279
MspR9I	CCNGG	3 cut(s)	40, 41, 279
MunI	CAATTG	2 cut(s)	102, 396
MwoI	GCNNNNNNNGC	5 cut(s)	75, 374, 446, 487, 723
NciI	CCSGG	3 cut(s)	40, 41, 279
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	2 cut(s)	461, 471
PcsI	WCGNNNNNNNCGW	2 cut(s)	337, 409
PdmI	GAANNNNTTC	2 cut(s)	467, 646
PfeI	GAWTC	5 cut(s)	248, 498, 566, 587, 653
PkrI	GCNGC	1 cut(s)	119
Ple19I	CGATCG	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	97, 135
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	260
PvuI	CGATCG	1 cut(s)	335
RsaI	GTAC	3 cut(s)	202, 273, 559
RsaNI	GTAC	3 cut(s)	201, 272, 558
RseI	CAYNNNNRTG	2 cut(s)	54, 482
SaqAI	TTAA	4 cut(s)	63, 213, 285, 754
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	7 cut(s)	46, 91, 228, 253, 260, 332, 553
Sau96I	GGNCC	2 cut(s)	97, 135
ScrFI	CCNGG	3 cut(s)	40, 41, 279
SduI	GDGCHC	2 cut(s)	194, 379
SfaNI	GCATC	3 cut(s)	25, 598, 619
SfuI	TTCGAA	2 cut(s)	461, 471
SinI	GGWCC	1 cut(s)	97
SmaI	CCCGGG	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	54, 482
Sse9I	AATT	5 cut(s)	83, 102, 288, 396, 473
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	3 cut(s)	38, 39, 277
TaaI	ACNGT	4 cut(s)	174, 208, 549, 562
TaqI	TCGA	3 cut(s)	256, 461, 471
TasI	AATT	5 cut(s)	83, 102, 288, 396, 473
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	5 cut(s)	248, 498, 566, 587, 653
Tru1I	TTAA	4 cut(s)	63, 213, 285, 754
Tru9I	TTAA	4 cut(s)	63, 213, 285, 754
TscAI	CASTG	2 cut(s)	194, 379
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	5 cut(s)	12, 306, 378, 466, 719
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	2 cut(s)	194, 379
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	288, 473
XmaI	CCCGGG	1 cut(s)	39
XmnI	GAANNNNTTC	2 cut(s)	467, 646
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.