Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Forward (+)

13595991 .. 13596689

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G105200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGATTGATGAAAACTCTTGTTCATCCATTGATGCCCGAGATGATCATGCTTGTGGTTTTAAATGCAACATATGCCTTGAAGTAGCTTATCAAGACCCAATTGTAACACCTTGTGGCCACCTTTACTGCTGGCCCTGTCTACATAGATGGCTTCGTGTTTGCTTATCCCAATCAAATAAGCCCCGCTGCCCGGCTTGTACGGCTGTCATTAAGGAGAGGAAGATGATCCCTATCTATGGAATAAAATCAGATCGAAGATCTCCTTCTGTACTGCGCGGTATTAAATTTCCAAATAGGCCATCTCCATTTTCTTCATCTTTAATTGGACGAGCAGTTTGTCAGACCCTAAACGCCATTGCTTCAGCTTTCAATGCTTCGTTTTCTTCATCTTCAATTGGACGAGCAGTTCCTCAAACCCTAGAAGCCGTTGCTTCAGCTCTCAATACGGATCATTTTTCGAAGGTGTTCGAATTCATGCCAATGGTGCTAGGTGGAATCGGAGTTGTTGTTCTCAGTGGGGGATATTTTTGGTGGCTTTCGAAACCGTTGGCTAGTACCAAACAAGTGTTGGATTCTGTTGAACAAGTGTGTGATTCTTGGGAAACATGTGATGGTAAAAGACTTGTGTGTGGTGGTTGGAAAAAAGTAAAAGCAATGTGTTCATTAGGGTTACGCGTTTTCTATTGTCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

233

Amino Acids

25.57

Weight (kDa)

8.78

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	142
AccII	CGCG	2 cut(s)	279, 678
AciI	CCGC	2 cut(s)	187, 279
AclWI	GGATC	2 cut(s)	223, 459
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	287, 473
AcuI	CTGAAG	2 cut(s)	348, 420
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	202, 273, 559
AfiI	CCNNNNNNNGG	2 cut(s)	193, 239
AflIII	ACRYGT	2 cut(s)	608, 676
AgsI	TTSAA	4 cut(s)	83, 373, 396, 584
AloI	GAACNNNNNNTCC	4 cut(s)	393, 425, 495, 527
AluBI	AGCT	3 cut(s)	89, 368, 440
AluI	AGCT	3 cut(s)	89, 368, 440
AlwI	GGATC	2 cut(s)	223, 459
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	3 cut(s)	118, 134, 299
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	2 cut(s)	287, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	1 cut(s)	194
AsuII	TTCGAA	3 cut(s)	461, 471, 542
AvaI	CYCGRG	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	3 cut(s)	144, 310, 608
BceAI	ACGGC	2 cut(s)	219, 413
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	194
BfaI	CTAG	3 cut(s)	422, 491, 555
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	25
Bpu14I	TTCGAA	3 cut(s)	461, 471, 542
BpuMI	CCSGG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 239
Bse3DI	GCAATG	2 cut(s)	357, 663
Bse8I	GATNNNNATC	1 cut(s)	233
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	193, 239
BseMI	GCAATG	2 cut(s)	357, 663
BseMII	CTCAG	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	2 cut(s)	279, 678
BshFI	GGCC	3 cut(s)	120, 136, 301
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	193, 239
BsnI	GGCC	3 cut(s)	120, 136, 301
BsoBI	CYCGRG	1 cut(s)	39
Bsp119I	TTCGAA	3 cut(s)	461, 471, 542
Bsp143I	GATC	5 cut(s)	46, 228, 253, 260, 451
BspACI	CCGC	2 cut(s)	187, 279
BspANI	GGCC	3 cut(s)	120, 136, 301
BspCNI	CTCAG	1 cut(s)	528
BspFNI	CGCG	2 cut(s)	279, 678
BspPI	GGATC	2 cut(s)	223, 459
BspT104I	TTCGAA	3 cut(s)	461, 471, 542
BsrDI	GCAATG	2 cut(s)	357, 663
BssMI	GATC	5 cut(s)	46, 228, 253, 260, 451
Bst4CI	ACNGT	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstBI	TTCGAA	3 cut(s)	461, 471, 542
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	2 cut(s)	279, 678
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	5 cut(s)	49, 231, 256, 263, 454
BstMBI	GATC	5 cut(s)	46, 228, 253, 260, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 203, 374, 487
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	192
BstUI	CGCG	2 cut(s)	279, 678
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	3 cut(s)	120, 136, 301
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	201, 272, 558
CviAII	CATG	3 cut(s)	50, 478, 609
CviQI	GTAC	3 cut(s)	201, 272, 558
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	5 cut(s)	48, 230, 255, 262, 453
DpnII	GATC	5 cut(s)	46, 228, 253, 260, 451
DraI	TTTAAA	1 cut(s)	64
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	348, 420
Eco88I	CYCGRG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	473
FaeI	CATG	3 cut(s)	53, 481, 612
FaiI	YATR	7 cut(s)	51, 74, 76, 147, 240, 479, 610
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	3 cut(s)	49, 477, 608
FauI	CCCGC	1 cut(s)	194
FauNDI	CATATG	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	3 cut(s)	422, 491, 555
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	120, 136, 301
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	53, 481, 612
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	3 cut(s)	498, 575, 596
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	4 cut(s)	253, 345, 503, 693
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	276, 457
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 203, 374, 487
HpyF3I	CTNAG	1 cut(s)	515
Hsp92II	CATG	3 cut(s)	53, 481, 612
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	5 cut(s)	46, 228, 253, 260, 451
LpnPI	CCDG	3 cut(s)	118, 151, 207
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	3 cut(s)	422, 491, 555
MaeIII	GTNAC	2 cut(s)	106, 672
MalI	GATC	5 cut(s)	48, 230, 255, 262, 453
MboI	GATC	5 cut(s)	46, 228, 253, 260, 451
MboII	GAAGA	5 cut(s)	235, 270, 306, 378, 384
MfeI	CAATTG	2 cut(s)	102, 396
MflI	RGATCY	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	5 cut(s)	102, 287, 324, 396, 473
MluI	ACGCGT	1 cut(s)	676
MluNI	TGGCCA	1 cut(s)	120
MmeI	TCCRAC	2 cut(s)	552, 620
MnlI	CCTC	2 cut(s)	213, 423
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	4 cut(s)	63, 213, 285, 323
MslI	CAYNNNNRTG	2 cut(s)	54, 482
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	2 cut(s)	102, 396
MvnI	CGCG	2 cut(s)	279, 678
MwoI	GCNNNNNNNGC	4 cut(s)	75, 203, 374, 487
NciI	CCSGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	5 cut(s)	46, 228, 253, 260, 451
NlaIII	CATG	3 cut(s)	53, 481, 612
NspI	RCATGY	1 cut(s)	612
NspV	TTCGAA	3 cut(s)	461, 471, 542
PciI	ACATGT	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	498, 575, 596
PkrI	GCNGC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	608
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	3 cut(s)	202, 273, 559
RsaNI	GTAC	3 cut(s)	201, 272, 558
RseI	CAYNNNNRTG	2 cut(s)	54, 482
SaqAI	TTAA	4 cut(s)	63, 213, 285, 323
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	5 cut(s)	46, 228, 253, 260, 451
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	7 cut(s)	91, 115, 126, 370, 442, 468, 496
SfaNI	GCATC	1 cut(s)	25
SfuI	TTCGAA	3 cut(s)	461, 471, 542
SmiMI	CAYNNNNRTG	2 cut(s)	54, 482
Sse9I	AATT	5 cut(s)	102, 287, 324, 396, 473
SsiI	CCGC	2 cut(s)	187, 279
SspMI	CTAG	3 cut(s)	422, 491, 555
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	256, 461, 471, 542
TasI	AATT	5 cut(s)	102, 287, 324, 396, 473
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	498, 575, 596
Tru1I	TTAA	4 cut(s)	63, 213, 285, 323
Tru9I	TTAA	4 cut(s)	63, 213, 285, 323
TscAI	CASTG	1 cut(s)	523
TseI	GCWGC	1 cut(s)	189
TspDTI	ATGAA	6 cut(s)	15, 27, 306, 378, 466, 654
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	523
XapI	RAATTY	2 cut(s)	287, 473
XceI	RCATGY	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	3 cut(s)	422, 491, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.