Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8005002.1

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 529

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8005002.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 466 bp

gactttgaagctcatggatgggggtgatggtggtagtggattcacctgcaacatttgctttgaatctgctgataaagatccaattgtaacaccttgtggccacctttactgcaagtcttgtatatatacatggcttcataacccaagacatgattccaagaggtgcccttgccctgtatgcaatgctattataaaggagagcaaactgattcctctgtatggaataggaaaatcacaagatttaaatcaaaagtctcggcctatacctgtagccagtgttgagagcccagaaaggcaagctggtcaaaagtctgccactacttcagctccatataggccaactccttcagctccagagtggccgactggtccaagacctgccactccttcagctccagagtggccaactgatccaacacctactccttcggctcctgaatggccgactggtccaagacctgccact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

155

Amino Acids

16.67

Weight (kDa)

8.11

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AarI	CACCTGC	1 cut(s)	54
Acc36I	ACCTGC	2 cut(s)	54, 386
AccB1I	GGYRCC	1 cut(s)	163
AclWI	GGATC	2 cut(s)	72, 405
AcoI	YGGCCR	4 cut(s)	98, 360, 402, 441
AcuI	CTGAAG	3 cut(s)	307, 331, 373
AdeI	CACNNNGTG	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	8, 63
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	11, 300, 327, 351, 393
AluI	AGCT	5 cut(s)	11, 300, 327, 351, 393
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	2 cut(s)	72, 405
AoxI	GGCC	6 cut(s)	98, 258, 336, 360, 402, 441
AspS9I	GGNCC	2 cut(s)	369, 450
AsuHPI	GGTGA	2 cut(s)	35, 36
AvaII	GGWCC	2 cut(s)	369, 450
BaeGI	GKGCMC	1 cut(s)	168
BalI	TGGCCA	2 cut(s)	100, 404
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	288
BccI	CCATC	2 cut(s)	12, 21
BcoDI	GTCTC	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	268
BfuAI	ACCTGC	2 cut(s)	54, 386
Bme18I	GGWCC	2 cut(s)	369, 450
BmgT120I	GGNCC	2 cut(s)	369, 450
BmiI	GGNNCC	2 cut(s)	165, 433
BpmI	CTGGAG	2 cut(s)	337, 379
BsaBI	GATNNNNATC	2 cut(s)	76, 244
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 407, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	3 cut(s)	274, 371, 452
Bse3DI	GCAATG	1 cut(s)	188
Bse8I	GATNNNNATC	2 cut(s)	76, 244
BseGI	GGATG	1 cut(s)	23
BseJI	GATNNNNATC	2 cut(s)	76, 244
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	188
BseNI	ACTGG	3 cut(s)	274, 371, 452
BseSI	GKGCMC	1 cut(s)	168
BshFI	GGCC	6 cut(s)	100, 260, 338, 362, 404, 443
BshNI	GGYRCC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	6 cut(s)	100, 260, 338, 362, 404, 443
Bsp1286I	GDGCHC	2 cut(s)	168, 288
Bsp143I	GATC	2 cut(s)	77, 410
BspANI	GGCC	6 cut(s)	100, 260, 338, 362, 404, 443
BspLI	GGNNCC	2 cut(s)	165, 433
BspMI	ACCTGC	2 cut(s)	54, 386
BspPI	GGATC	2 cut(s)	72, 405
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	188
BsrI	ACTGG	3 cut(s)	274, 371, 452
BssMI	GATC	2 cut(s)	77, 410
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	80, 413
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	77, 410
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 178
BstSFI	CTRYAG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	6 cut(s)	100, 260, 338, 362, 404, 443
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	2 cut(s)	54, 386
Cac8I	GCNNGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	369, 450
CviAII	CATG	3 cut(s)	14, 130, 150
DpnI	GATC	2 cut(s)	79, 412
DpnII	GATC	2 cut(s)	77, 410
DraI	TTTAAA	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	96
EaeI	YGGCCR	4 cut(s)	98, 360, 402, 441
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	369, 450
Eco57I	CTGAAG	3 cut(s)	307, 331, 373
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	3 cut(s)	17, 133, 153
FatI	CATG	3 cut(s)	13, 129, 149
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	337, 379
HaeIII	GGCC	6 cut(s)	100, 260, 338, 362, 404, 443
Hin1II	CATG	3 cut(s)	17, 133, 153
HinfI	GANTC	4 cut(s)	40, 63, 153, 209
HphI	GGTGA	2 cut(s)	35, 36
Hpy188III	TCNNGA	3 cut(s)	354, 396, 435
HpyAV	CCTTC	3 cut(s)	355, 397, 436
HpyCH4V	TGCA	3 cut(s)	49, 112, 181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 178
Hsp92II	CATG	3 cut(s)	17, 133, 153
Kzo9I	GATC	2 cut(s)	77, 410
LmnI	GCTCC	4 cut(s)	332, 356, 398, 437
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	79, 412
MboI	GATC	2 cut(s)	77, 410
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	168, 288
MlsI	TGGCCA	2 cut(s)	100, 404
MluCI	AATT	1 cut(s)	82
MluNI	TGGCCA	2 cut(s)	100, 404
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	2 cut(s)	154, 223
Mox20I	TGGCCA	2 cut(s)	100, 404
MscI	TGGCCA	2 cut(s)	100, 404
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	2 cut(s)	100, 404
MunI	CAATTG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	55, 178
NdeII	GATC	2 cut(s)	77, 410
NlaIII	CATG	3 cut(s)	17, 133, 153
NlaIV	GGNNCC	2 cut(s)	165, 433
NmeAIII	GCCGAG	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	54
PfeI	GAWTC	4 cut(s)	40, 63, 153, 209
PsiI	TTATAA	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	165, 433
PspPI	GGNCC	2 cut(s)	369, 450
PsuI	RGATCY	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	77, 410
Sau96I	GGNCC	2 cut(s)	369, 450
SduI	GDGCHC	2 cut(s)	168, 288
SfcI	CTRYAG	1 cut(s)	268
SinI	GGWCC	2 cut(s)	369, 450
SmiI	ATTTAAAT	1 cut(s)	244
Sse9I	AATT	1 cut(s)	82
SwaI	ATTTAAAT	1 cut(s)	244
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	4 cut(s)	40, 63, 153, 209
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	369, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.