Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Reverse (-)

12689943 .. 12691490

Gene Structure 1548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG110700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGGGAATAGGGAGATCAAATGGTTCAGATCCAAGGCTGTCTGTACCCAGTATTGAGATTCCAGATCGCCCAGCTGCTCCACGGTTTACTGCTAGGCCTGCTTCAACTTCCCGTATCTATGTGAAACTATTTTGTCGACTATTGATATCGTCTGGAGAACAGCTTCTAAAGTCAGTGATAGAAAGTGCATCAAACAACTTAGTTAAATCTCTCAACAGGCGATTCCATGGATCAATTGAGGCACAGGAAGTAAGACGCATTACTGATGCAGAAGGAAGCAGCAATCACAGTGGATCCATGGAGGGAGCGGAAGTCAGGGACAACAATGGAGATGGAAGTAGTCTGACTTCTGTGCTCGACAATGGAAGGCTACATGAGCTCATAGTATTTGAACAAAGCTCGGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.94

Weight (kDa)

5.91

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	4 cut(s)	26, 241, 291, 304
AfaI	GTAC	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	108, 395
AluBI	AGCT	4 cut(s)	77, 166, 382, 402
AluI	AGCT	4 cut(s)	77, 166, 382, 402
Alw21I	GWGCWC	2 cut(s)	360, 384
AlwI	GGATC	4 cut(s)	26, 241, 291, 304
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	77, 282
Asp700I	GAANNNNTTC	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	384
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
Bbv12I	GWGCWC	2 cut(s)	360, 384
BbvI	GCAGC	2 cut(s)	64, 294
BccI	CCATC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	78, 283
BlsI	GCNGC	2 cut(s)	79, 284
BmiI	GGNNCC	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	200, 259
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	35, 83, 229, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bse1I	ACTGG	1 cut(s)	51
BseDI	CCNNGG	4 cut(s)	35, 83, 229, 300
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	64, 294
BseYI	CCCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	360, 384
BslFI	GGGAC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	360, 384
Bsp143I	GATC	5 cut(s)	17, 31, 67, 233, 296
Bsp19I	CCATGG	2 cut(s)	229, 300
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	4 cut(s)	26, 241, 291, 304
BsrBI	CCGCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	4 cut(s)	35, 83, 229, 300
BssMI	GATC	5 cut(s)	17, 31, 67, 233, 296
BssT1I	CCWWGG	3 cut(s)	35, 229, 300
Bst4CI	ACNGT	2 cut(s)	87, 293
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	3 cut(s)	83, 229, 300
BstKTI	GATC	5 cut(s)	20, 34, 70, 236, 299
BstMBI	GATC	5 cut(s)	17, 31, 67, 233, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 379
BstV1I	GCAGC	2 cut(s)	64, 294
BstX2I	RGATCY	2 cut(s)	31, 296
BstYI	RGATCY	2 cut(s)	31, 296
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	3 cut(s)	83, 229, 300
BtsIMutI	CAGTG	2 cut(s)	183, 298
Cac8I	GCNNGC	1 cut(s)	102
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	47
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	3 cut(s)	230, 301, 377
CviJI	RGCY	7 cut(s)	40, 77, 100, 166, 373, 382, 402
CviKI_1	RGCY	7 cut(s)	40, 77, 100, 166, 373, 382, 402
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	5 cut(s)	19, 33, 69, 235, 298
DpnII	GATC	5 cut(s)	17, 31, 67, 233, 296
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	3 cut(s)	35, 229, 300
Eco147I	AGGCCT	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	150
EcoT14I	CCWWGG	3 cut(s)	35, 229, 300
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	3 cut(s)	35, 229, 300
FaeI	CATG	3 cut(s)	233, 304, 380
FaiI	YATR	5 cut(s)	123, 231, 302, 378, 386
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	3 cut(s)	229, 300, 376
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	78, 283
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	78, 283
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	78, 283
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	100
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	233, 304, 380
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	61, 225
Hpy166II	GTNNAC	2 cut(s)	90, 140
Hpy188I	TCNGA	3 cut(s)	31, 348, 406
Hpy188III	TCNNGA	2 cut(s)	65, 156
Hpy8I	GTNNAC	2 cut(s)	90, 140
HpyAV	CCTTC	2 cut(s)	269, 363
HpyCH4III	ACNGT	2 cut(s)	87, 293
HpyCH4V	TGCA	2 cut(s)	191, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 379
HpyF3I	CTNAG	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	233, 304, 380
Kzo9I	GATC	5 cut(s)	17, 31, 67, 233, 296
LmnI	GCTCC	2 cut(s)	85, 308
LpnPI	CCDG	8 cut(s)	64, 78, 87, 114, 141, 205, 233, 304
Lsp1109I	GCAGC	2 cut(s)	64, 294
LweI	GCATC	2 cut(s)	200, 259
MaeI	CTAG	1 cut(s)	96
MalI	GATC	5 cut(s)	19, 33, 69, 235, 298
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	5 cut(s)	17, 31, 67, 233, 296
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	2 cut(s)	31, 296
MhlI	GDGCHC	2 cut(s)	360, 384
MluCI	AATT	1 cut(s)	237
MnlI	CCTC	2 cut(s)	235, 298
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	101, 379
NcoI	CCATGG	2 cut(s)	229, 300
NdeII	GATC	5 cut(s)	17, 31, 67, 233, 296
NlaIII	CATG	3 cut(s)	233, 304, 380
NlaIV	GGNNCC	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	61, 225
PkrI	GCNGC	2 cut(s)	79, 284
Psp124BI	GAGCTC	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	31, 296
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	78, 283
Sau3AI	GATC	5 cut(s)	17, 31, 67, 233, 296
SduI	GDGCHC	2 cut(s)	360, 384
SetI	ASST	4 cut(s)	79, 168, 384, 404
SfaNI	GCATC	2 cut(s)	200, 259
Sse9I	AATT	1 cut(s)	237
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	100
StyI	CCWWGG	3 cut(s)	35, 229, 300
TaaI	ACNGT	2 cut(s)	87, 293
TaqI	TCGA	2 cut(s)	139, 360
TasI	AATT	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	61, 225
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	183, 298
TseI	GCWGC	2 cut(s)	77, 282
TspRI	CASTG	2 cut(s)	183, 298
XmiI	GTMKAC	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.