Rh6AG119000

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004525
Physical Location & Seq
Reverse (-)
17876745 .. 17879138
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG119000.1

Sequence Viewer

Length: 771 bp
ATGGATGGGGGTGATGGTGGTAGTGGATTCACCTGCAACATTTGCTTTGAATCTGCTGATAAAGATCCAATTGTAACACCTTGTGGCCACCTTTACTGCAAGTCTTGTATATATACATGGCTTCATAACCCAAGACATGATTCCAAGAGGTGCCCTTGCCCTGTATGCAATGCTATTATAAAGGAGAGCAAACTGATTCCTCTGTATGGAATAGGAAAATCACAAGATTTAAATCAAAAGTCTCGGCCTATACCTGTAGCCAGTGTTGAGAGCCCAGAAAGGCAAGCTGGTCAAAAGTCCGCCACTACTTCAGCTCCATATAGGCCAACTCCTTCAGCTCCAGAGTGGCCGACTGGTCCAAGACCTGCCACTCCTTCAGCTCCAGAGTGGCCAACTGATCCAACACCTACTCCTTCGGCTCCTGAATGGCCGACTGGTCCAAGACCTGCCACTTCTTCAGTACCAAACTGTTCATCTGATCAAACACTTGCCACTCCTTCAACTGCCAATGTCATTCTGAACCAAGTTTGTAGGCTGTTAATACGTGTGGGACAGTACATGCTAGTGAGGATAATAGAAGTTGCCACAGATAAGCTCATTGAAGCTGTAGAAAGAAAAATCAATGAGTCGAGTGAGGCAGCAGAAGAGAGGAACGATGTTAATGAAGAAGGAAGTGGAAATAATACTGTATCAAGTGAGGAGGTTGAAGTGACGGATAGCAATGGAGAAGGAAGCCATCTGGGACCCTGGGTTGTGCTCAACCCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

256

Amino Acids

27.52

Weight (kDa)

5.01

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 11 - 62 8e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 11 - 57 8.7e-07 Ring finger domain
zf-RING_UBOX PF13445 12 - 52 3.2e-09 RING-type zinc-finger
zf-C3HC4 PF00097 12 - 56 1.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 12 - 52 1.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 12 - 57 1.5e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AarI CACCTGC 1 cut(s) 41
Acc36I ACCTGC 3 cut(s) 41, 373, 454
AccB1I GGYRCC 1 cut(s) 150
AciI CCGC 1 cut(s) 300
AclWI GGATC 2 cut(s) 59, 392
AcoI YGGCCR 4 cut(s) 85, 347, 389, 428
AcuI CTGAAG 4 cut(s) 294, 318, 360, 441
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 2 cut(s) 462, 557
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 4 cut(s) 50, 501, 602, 707
AjnI CCWGG 1 cut(s) 746
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 6 cut(s) 287, 314, 338, 380, 595, 605
AluI AGCT 6 cut(s) 287, 314, 338, 380, 595, 605
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 2 cut(s) 59, 392
AoxI GGCC 6 cut(s) 85, 245, 323, 347, 389, 428
ApeKI GCWGC 1 cut(s) 638
AspS9I GGNCC 3 cut(s) 356, 437, 743
AsuHPI GGTGA 2 cut(s) 22, 23
AvaII GGWCC 3 cut(s) 356, 437, 743
BaeGI GKGCMC 1 cut(s) 155
BalI TGGCCA 2 cut(s) 87, 391
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 1 cut(s) 650
BccI CCATC 2 cut(s) 8, 744
BciT130I CCWGG 1 cut(s) 748
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 2 cut(s) 255, 606
BfuAI ACCTGC 3 cut(s) 41, 373, 454
BisI GCNGC 1 cut(s) 639
BlsI GCNGC 1 cut(s) 640
Bme1390I CCNGG 1 cut(s) 748
Bme18I GGWCC 3 cut(s) 356, 437, 743
BmgT120I GGNCC 3 cut(s) 356, 437, 743
BmiI GGNNCC 4 cut(s) 152, 420, 744, 745
BmrFI CCNGG 1 cut(s) 748
BpmI CTGGAG 2 cut(s) 324, 366
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 2 cut(s) 63, 231
BsaJI CCNNGG 2 cut(s) 746, 747
BsaXI ACNNNNNCTCC 4 cut(s) 298, 328, 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 3 cut(s) 261, 358, 439
Bse3DI GCAATG 2 cut(s) 175, 727
Bse8I GATNNNNATC 2 cut(s) 63, 231
BseBI CCWGG 1 cut(s) 748
BseDI CCNNGG 2 cut(s) 746, 747
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 63, 231
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 2 cut(s) 175, 727
BseNI ACTGG 3 cut(s) 261, 358, 439
BseRI GAGGAG 1 cut(s) 713
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 1 cut(s) 650
BshFI GGCC 6 cut(s) 87, 247, 325, 349, 391, 430
BshNI GGYRCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 759
BslFI GGGAC 2 cut(s) 564, 756
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 564, 756
BsnI GGCC 6 cut(s) 87, 247, 325, 349, 391, 430
Bsp1286I GDGCHC 3 cut(s) 155, 275, 759
Bsp143I GATC 3 cut(s) 64, 397, 478
BspACI CCGC 1 cut(s) 300
BspANI GGCC 6 cut(s) 87, 247, 325, 349, 391, 430
BspLI GGNNCC 4 cut(s) 152, 420, 744, 745
BspMI ACCTGC 3 cut(s) 41, 373, 454
BspPI GGATC 2 cut(s) 59, 392
BspT107I GGYRCC 1 cut(s) 150
BsrDI GCAATG 2 cut(s) 175, 727
BsrI ACTGG 3 cut(s) 261, 358, 439
BssECI CCNNGG 2 cut(s) 746, 747
BssMI GATC 3 cut(s) 64, 397, 478
Bst2UI CCWGG 1 cut(s) 748
Bst4CI ACNGT 3 cut(s) 470, 555, 688
Bst6I CTCTTC 1 cut(s) 639
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 768
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 67, 400, 481
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 3 cut(s) 64, 397, 478
BstMWI GCNNNNNNNGC 2 cut(s) 42, 165
BstNI CCWGG 1 cut(s) 748
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 746
BstSFI CTRYAG 2 cut(s) 255, 606
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 650
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 6 cut(s) 87, 247, 325, 349, 391, 430
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 268
BveI ACCTGC 3 cut(s) 41, 373, 454
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 356, 437, 743
Csp6I GTAC 2 cut(s) 461, 556
CviAII CATG 3 cut(s) 117, 137, 559
CviQI GTAC 2 cut(s) 461, 556
DdeI CTNAG 1 cut(s) 768
DpnI GATC 3 cut(s) 66, 399, 480
DpnII GATC 3 cut(s) 64, 397, 478
DraI TTTAAA 1 cut(s) 231
DraIII CACNNNGTG 1 cut(s) 83
EaeI YGGCCR 4 cut(s) 85, 347, 389, 428
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
EciI GGCGGA 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 3 cut(s) 356, 437, 743
Eco57I CTGAAG 4 cut(s) 294, 318, 360, 441
EcoO109I RGGNCCY 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 746
EcoT38I GRGCYC 1 cut(s) 275
FaeI CATG 3 cut(s) 120, 140, 562
FaqI GGGAC 2 cut(s) 564, 756
FatI CATG 3 cut(s) 116, 136, 558
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 639
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 639
FspBI CTAG 1 cut(s) 563
GluI GCNGC 1 cut(s) 639
GsuI CTGGAG 2 cut(s) 324, 366
HaeIII GGCC 6 cut(s) 87, 247, 325, 349, 391, 430
Hin1II CATG 3 cut(s) 120, 140, 562
HinfI GANTC 5 cut(s) 27, 50, 140, 196, 626
HphI GGTGA 2 cut(s) 22, 23
Hpy188I TCNGA 2 cut(s) 478, 519
Hpy188III TCNNGA 3 cut(s) 341, 383, 422
HpyAV CCTTC 6 cut(s) 342, 384, 423, 507, 662, 722
HpyCH4III ACNGT 3 cut(s) 470, 555, 688
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 3 cut(s) 36, 99, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 165
HpyF3I CTNAG 1 cut(s) 768
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 3 cut(s) 120, 140, 562
KflI GGGWCCC 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 3 cut(s) 64, 397, 478
LmnI GCTCC 4 cut(s) 319, 343, 385, 424
Lsp1109I GCAGC 1 cut(s) 650
MaeI CTAG 1 cut(s) 563
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 73, 709
MalI GATC 3 cut(s) 66, 399, 480
MboI GATC 3 cut(s) 64, 397, 478
MboII GAAGA 3 cut(s) 447, 656, 677
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 3 cut(s) 155, 275, 759
MlsI TGGCCA 2 cut(s) 87, 391
MluCI AATT 1 cut(s) 69
MluNI TGGCCA 2 cut(s) 87, 391
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 7 cut(s) 141, 210, 561, 628, 642, 691, 694
Mox20I TGGCCA 2 cut(s) 87, 391
MscI TGGCCA 2 cut(s) 87, 391
MseI TTAA 3 cut(s) 230, 539, 660
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 2 cut(s) 87, 391
MspR9I CCNGG 1 cut(s) 748
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 748
MwoI GCNNNNNNNGC 2 cut(s) 42, 165
NdeII GATC 3 cut(s) 64, 397, 478
NlaIII CATG 3 cut(s) 120, 140, 562
NlaIV GGNNCC 4 cut(s) 152, 420, 744, 745
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 709
NspI RCATGY 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 41
PasI CCCWGGG 1 cut(s) 747
PfeI GAWTC 4 cut(s) 27, 50, 140, 196
PkrI GCNGC 1 cut(s) 640
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 743
PsiI TTATAA 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 746
PspGI CCWGG 1 cut(s) 746
PspN4I GGNNCC 4 cut(s) 152, 420, 744, 745
PspPI GGNCC 3 cut(s) 356, 437, 743
PspPPI RGGWCCY 1 cut(s) 743
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 2 cut(s) 462, 557
RsaNI GTAC 2 cut(s) 461, 556
RseI CAYNNNNRTG 1 cut(s) 563
SaqAI TTAA 3 cut(s) 230, 539, 660
SatI GCNGC 1 cut(s) 639
Sau3AI GATC 3 cut(s) 64, 397, 478
Sau96I GGNCC 3 cut(s) 356, 437, 743
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 748
SduI GDGCHC 3 cut(s) 155, 275, 759
SfcI CTRYAG 2 cut(s) 255, 606
SinI GGWCC 3 cut(s) 356, 437, 743
SmiI ATTTAAAT 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 563
Sse9I AATT 1 cut(s) 69
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 1 cut(s) 746
SwaI ATTTAAAT 1 cut(s) 231
TaaI ACNGT 3 cut(s) 470, 555, 688
TaiI ACGT 1 cut(s) 547
TaqI TCGA 1 cut(s) 629
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 4 cut(s) 27, 50, 140, 196
Tru1I TTAA 3 cut(s) 230, 539, 660
Tru9I TTAA 3 cut(s) 230, 539, 660
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 3 cut(s) 113, 462, 678
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 3 cut(s) 356, 437, 743
XceI RCATGY 1 cut(s) 562
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.