Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Forward (+)

53006109 .. 53008433

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGATGGAGGTAACGAATCTGATAGCAATGGTTTTATTTGCAACATTTGCTATGAACCAGCTGAACAAGACCCAATAGTGACACACTGCGGCCATCTTTACTGCTGGCCTTGTCTATATACATGGCTTCATCGCACACCACATGCTTCAAATAGGTGCCCTTGCCCTGTTTGTAAGGCTATTATCGTGCAAAGTAGACTGATCCCTCTCTATGGAATAGGGAGATCACATGGTTCAGATCCAAGGCTGTCTGTACCCAGTATTGAGATTCCAGATCTCCCAGCTGCTCCACGGTTTACTGCTAGGCCTGCTTCAACTCCCCGTATCTTTGTGAAACTATTTTGTCGACTATTGATGTCATCTGGAGAACAGCTTCTAAAGTCAATGATAGAAAGTGCATCAAACAACTTAGTTAAATCTCTCAACAGGCGATTCCATGGATCAATTGAGGCACCGGAAGTAAGCCGCAGGACTGATGCAGAAGGAAGCAGCAATCACAGTGGATCGATGGAGGGAGCGGAAGCCAGGGACAACAATGGAGTTGGAAATAGTCTGATTTCTGTGCTCGACAATGGAAGGCTACATGAGCTCATAGTACTTGAACAAAGCTTGGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

207

Amino Acids

22.67

Weight (kDa)

6.23

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	14 - 54	1.8e-07	RING-type zinc-finger
zf-C3HC4	PF00097	14 - 58	5.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	14 - 59	2e-06	zinc-RING finger domain
zf-RING_2	PF13639	14 - 59	5e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	156, 451
AccBSI	CCGCTC	1 cut(s)	518
AccI	GTMKAC	2 cut(s)	196, 346
AciI	CCGC	3 cut(s)	90, 466, 518
AclWI	GGATC	4 cut(s)	196, 233, 448, 511
AcoI	YGGCCR	1 cut(s)	91
AfaI	GTAC	2 cut(s)	255, 597
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	150, 315, 602
AjnI	CCWGG	1 cut(s)	524
AluBI	AGCT	5 cut(s)	62, 284, 373, 589, 609
AluI	AGCT	5 cut(s)	62, 284, 373, 589, 609
Alw21I	GWGCWC	2 cut(s)	567, 591
AlwI	GGATC	4 cut(s)	196, 233, 448, 511
AoxI	GGCC	3 cut(s)	91, 107, 305
ApeKI	GCWGC	2 cut(s)	284, 489
Asp700I	GAANNNNTTC	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	156, 451
BanII	GRGCYC	1 cut(s)	591
Bbv12I	GWGCWC	2 cut(s)	567, 591
BbvI	GCAGC	2 cut(s)	271, 501
BccI	CCATC	2 cut(s)	102, 502
BciT130I	CCWGG	1 cut(s)	526
BfaI	CTAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	4 cut(s)	91, 285, 466, 490
BlsI	GCNGC	4 cut(s)	92, 286, 467, 491
BmcAI	AGTACT	1 cut(s)	597
Bme1390I	CCNGG	1 cut(s)	526
BmiI	GGNNCC	2 cut(s)	158, 453
BmrFI	CCNGG	1 cut(s)	526
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	407, 466
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	506
BsaJI	CCNNGG	4 cut(s)	242, 290, 436, 525
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	526
BseCI	ATCGAT	1 cut(s)	506
BseDI	CCNNGG	4 cut(s)	242, 290, 436, 525
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	271, 501
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	3 cut(s)	93, 109, 307
BshNI	GGYRCC	2 cut(s)	156, 451
BshVI	ATCGAT	1 cut(s)	506
BsiHKAI	GWGCWC	2 cut(s)	567, 591
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	93, 109, 307
Bsp1286I	GDGCHC	3 cut(s)	161, 567, 591
Bsp143I	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	3 cut(s)	90, 466, 518
BspANI	GGCC	3 cut(s)	93, 109, 307
BspDI	ATCGAT	1 cut(s)	506
BspLI	GGNNCC	2 cut(s)	158, 453
BspPI	GGATC	4 cut(s)	196, 233, 448, 511
BspT107I	GGYRCC	2 cut(s)	156, 451
BsrBI	CCGCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	4 cut(s)	242, 290, 436, 525
BssMI	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
BssT1I	CCWWGG	2 cut(s)	242, 436
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	2 cut(s)	294, 500
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	107, 309
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	2 cut(s)	290, 436
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	6 cut(s)	204, 227, 241, 277, 443, 506
BstMBI	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 308, 586
BstNI	CCWGG	1 cut(s)	526
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	524
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	271, 501
BstX2I	RGATCY	2 cut(s)	238, 274
BstYI	RGATCY	2 cut(s)	238, 274
Bsu15I	ATCGAT	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	93, 109, 307
BsuTUI	ATCGAT	1 cut(s)	506
BtgI	CCRYGG	2 cut(s)	290, 436
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	85, 505
Cac8I	GCNNGC	2 cut(s)	107, 309
ClaI	ATCGAT	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	254, 596
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	5 cut(s)	123, 143, 230, 437, 584
CviQI	GTAC	2 cut(s)	254, 596
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	6 cut(s)	203, 226, 240, 276, 442, 505
DpnII	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
EaeI	YGGCCR	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	242, 436
Eco147I	AGGCCT	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	2 cut(s)	242, 436
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	242, 436
FaeI	CATG	5 cut(s)	126, 146, 233, 440, 587
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	5 cut(s)	122, 142, 229, 436, 583
FblI	GTMKAC	2 cut(s)	196, 346
Fnu4HI	GCNGC	4 cut(s)	91, 285, 466, 490
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	4 cut(s)	91, 285, 466, 490
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	4 cut(s)	91, 285, 466, 490
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	93, 109, 307
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	5 cut(s)	126, 146, 233, 440, 587
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	3 cut(s)	17, 268, 432
HpaII	CCGG	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	197, 297, 347
Hpy188I	TCNGA	3 cut(s)	22, 238, 555
Hpy188III	TCNNGA	2 cut(s)	272, 363
Hpy8I	GTNNAC	3 cut(s)	197, 297, 347
HpyAV	CCTTC	2 cut(s)	476, 570
HpyCH4III	ACNGT	2 cut(s)	294, 500
HpyCH4V	TGCA	4 cut(s)	42, 190, 398, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 308, 586
HpyF3I	CTNAG	1 cut(s)	409
Hsp92II	CATG	5 cut(s)	126, 146, 233, 440, 587
Kzo9I	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
LmnI	GCTCC	2 cut(s)	292, 515
Lsp1109I	GCAGC	2 cut(s)	271, 501
LweI	GCATC	2 cut(s)	407, 466
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	11, 79
MalI	GATC	6 cut(s)	203, 226, 240, 276, 442, 505
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	2 cut(s)	238, 274
MhlI	GDGCHC	3 cut(s)	161, 567, 591
MluCI	AATT	1 cut(s)	444
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	3 cut(s)	216, 442, 505
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	62, 284
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	526
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	3 cut(s)	48, 308, 586
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
NlaIII	CATG	5 cut(s)	126, 146, 233, 440, 587
NlaIV	GGNNCC	2 cut(s)	158, 453
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	17, 268, 432
PkrI	GCNGC	4 cut(s)	92, 286, 467, 491
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	524
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	158, 453
PsuI	RGATCY	2 cut(s)	238, 274
PvuII	CAGCTG	2 cut(s)	62, 284
RsaI	GTAC	2 cut(s)	255, 597
RsaNI	GTAC	2 cut(s)	254, 596
SacI	GAGCTC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	4 cut(s)	91, 285, 466, 490
Sau3AI	GATC	6 cut(s)	201, 224, 238, 274, 440, 503
ScaI	AGTACT	1 cut(s)	597
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	3 cut(s)	161, 567, 591
SetI	ASST	7 cut(s)	13, 64, 158, 286, 375, 591, 611
SfaNI	GCATC	2 cut(s)	407, 466
Sse9I	AATT	1 cut(s)	444
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	90, 466, 518
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	2 cut(s)	242, 436
TaaI	ACNGT	2 cut(s)	294, 500
TaqI	TCGA	3 cut(s)	346, 506, 567
TasI	AATT	1 cut(s)	444
TatI	WGTACW	1 cut(s)	595
TauI	GCSGC	2 cut(s)	93, 468
TfiI	GAWTC	3 cut(s)	17, 268, 432
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	92, 505
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	284, 489
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	69, 119
TspRI	CASTG	2 cut(s)	92, 505
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	2 cut(s)	196, 346
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.