Rh6CG111300

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004525
Physical Location & Seq
Reverse (-)
12751578 .. 12753795
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG111300.1

Sequence Viewer

Length: 975 bp
ATGCAATTGGCCCTTAGATCGGTGGGGAGTCCACAAAGCAAGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCATTCTCGCTCCAAATTCGCGGCATCTCATCGACCAAGGAGCAAGCGCTCGTTCCAAATACTCGGAAAGAAGGTTAATTGTTGAAAAATTTGAAAAATCAACTATCTGGACTTTGAAGCTCATGGATGGGGGTGATGGTGGTAGTGGATTCACCTGCAACATTTGCTTTGAATCTGCTGATAAAGATCCAATTGTAACACCTTGTGGCCACCTTTACTGCAAGTCTTGTATATATACATGGCTTCGCAACTCAAGACATGATTCCAAGAGGTGCCCTTGCCCTGTATGCAATGCTATTATAGAGGATAGCAAACTGATTCCTCTGTATGGAATAGGAAAATCACAAGATTTAAATCAAAAGTCTCGGCCTATACCTGTAGCCAGTGTTGAGATCCCAGAAAGGCAAGCTGGTCAAAAGTCTGCCACTACTGCAGCTCCATATAGGCCAACTCCTTCAGCTCCAGAGTGGCCGACTGGTCCAAGACCTGCCACTCCTTCAGCTCCAGAGTGGCCAACTGATCCAACACCCACTCCTTCGGCTCCTGAATGGCCAACTGGTCCAAGACCTGCCACTCCTTCAGTTCCAAACTGTTCATGTGATCAAACAATTGCCACTCCTTCAACTGCCAATGTCATTCTGAACCAAGTTTGTAGGCTTTTAATACGGGTGGGACAGTACATGCTAGTGAGGATAATAGAAGTTGCCACAGATAAGCTCATTGAAGCTGTAGAACGAAAAATCACTGAGTCGAGTGAGGCAGCAGAAGAGAGGAATGGTGTTAATGAAGAAGGAAGCGGAAATAATACTGTATCAAGTGAGGAGGTTGAAGTGACGGATAGCAATGGAGAAGGAAGCCATCTGGGACCCTGGGTTGTGCTCAACCCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

324

Amino Acids

35.14

Weight (kDa)

6.15

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 79 - 125 3.3e-08 Ring finger domain
zf-C3HC4_3 PF13920 79 - 130 5.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 80 - 120 9.3e-11 RING-type zinc-finger
zf-C3HC4 PF00097 80 - 124 6.3e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 80 - 124 5.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 80 - 125 1.1e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 3 cut(s) 245, 577, 658
AccB1I GGYRCC 1 cut(s) 354
AccII CGCG 1 cut(s) 103
AciI CCGC 2 cut(s) 103, 879
AclWI GGATC 3 cut(s) 263, 469, 596
AcoI YGGCCR 4 cut(s) 289, 551, 593, 632
AcsI RAATTY 2 cut(s) 97, 170
AcuI CTGAAG 3 cut(s) 522, 564, 645
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 761
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 19, 410
AgsI TTSAA 7 cut(s) 167, 176, 199, 254, 705, 806, 911
AjnI CCWGG 1 cut(s) 950
AluBI AGCT 7 cut(s) 202, 491, 518, 542, 584, 799, 809
AluI AGCT 7 cut(s) 202, 491, 518, 542, 584, 799, 809
Alw21I GWGCWC 1 cut(s) 963
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 3 cut(s) 263, 469, 596
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 7 cut(s) 9, 289, 449, 527, 551, 593, 632
ApeKI GCWGC 2 cut(s) 515, 842
ApoI RAATTY 2 cut(s) 97, 170
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 4 cut(s) 10, 560, 641, 947
AsuHPI GGTGA 2 cut(s) 226, 227
AvaII GGWCC 3 cut(s) 560, 641, 947
BaeGI GKGCMC 1 cut(s) 359
BalI TGGCCA 3 cut(s) 291, 595, 634
BanI GGYRCC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 963
BbvI GCAGC 2 cut(s) 527, 854
BccI CCATC 3 cut(s) 203, 212, 948
BciT130I CCWGG 1 cut(s) 952
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 767
BfmI CTRYAG 3 cut(s) 459, 513, 810
BfoI RGCGCY 1 cut(s) 132
BfuAI ACCTGC 3 cut(s) 245, 577, 658
BisI GCNGC 3 cut(s) 104, 516, 843
BlsI GCNGC 3 cut(s) 105, 517, 844
Bme1390I CCNGG 1 cut(s) 952
Bme18I GGWCC 3 cut(s) 560, 641, 947
BmgT120I GGNCC 4 cut(s) 10, 560, 641, 947
BmiI GGNNCC 4 cut(s) 356, 624, 948, 949
BmrFI CCNGG 1 cut(s) 952
BmsI GCATC 1 cut(s) 115
BpmI CTGGAG 2 cut(s) 528, 570
BpuEI CTTGAG 1 cut(s) 319
BsaBI GATNNNNATC 2 cut(s) 267, 435
BsaJI CCNNGG 3 cut(s) 118, 950, 951
BsaXI ACNNNNNCTCC 4 cut(s) 502, 532, 598, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 410
Bse1I ACTGG 3 cut(s) 465, 562, 643
Bse3DI GCAATG 2 cut(s) 379, 931
Bse8I GATNNNNATC 2 cut(s) 267, 435
BseBI CCWGG 1 cut(s) 952
BseDI CCNNGG 3 cut(s) 118, 950, 951
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 2 cut(s) 267, 435
BseLI CCNNNNNNNGG 2 cut(s) 19, 410
BseMI GCAATG 2 cut(s) 379, 931
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 3 cut(s) 465, 562, 643
BseRI GAGGAG 1 cut(s) 917
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 2 cut(s) 527, 854
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 7 cut(s) 11, 291, 451, 529, 553, 595, 634
BshNI GGYRCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 963
BslFI GGGAC 2 cut(s) 768, 960
BslI CCNNNNNNNGG 2 cut(s) 19, 410
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 768, 960
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 7 cut(s) 11, 291, 451, 529, 553, 595, 634
Bsp1286I GDGCHC 2 cut(s) 359, 963
Bsp143I GATC 5 cut(s) 17, 268, 474, 601, 682
BspACI CCGC 2 cut(s) 103, 879
BspANI GGCC 7 cut(s) 11, 291, 451, 529, 553, 595, 634
BspCNI CTCAG 1 cut(s) 820
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 4 cut(s) 356, 624, 948, 949
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 3 cut(s) 245, 577, 658
BspPI GGATC 3 cut(s) 263, 469, 596
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 2 cut(s) 379, 931
BsrI ACTGG 3 cut(s) 465, 562, 643
BssECI CCNNGG 3 cut(s) 118, 950, 951
BssMI GATC 5 cut(s) 17, 268, 474, 601, 682
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 952
Bst4CI ACNGT 3 cut(s) 674, 759, 892
Bst6I CTCTTC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 127, 489
BstDEI CTNAG 2 cut(s) 14, 828
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 5 cut(s) 20, 271, 477, 604, 685
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 5 cut(s) 17, 268, 474, 601, 682
BstMWI GCNNNNNNNGC 3 cut(s) 246, 369, 512
BstNI CCWGG 1 cut(s) 952
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 950
BstSFI CTRYAG 3 cut(s) 459, 513, 810
BstSLI GKGCMC 1 cut(s) 359
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 527, 854
BstX2I RGATCY 2 cut(s) 268, 474
BstYI RGATCY 2 cut(s) 268, 474
BsuRI GGCC 7 cut(s) 11, 291, 451, 529, 553, 595, 634
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 472, 825
BveI ACCTGC 3 cut(s) 245, 577, 658
Cac8I GCNNGC 2 cut(s) 127, 489
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 4 cut(s) 10, 560, 641, 947
Csp6I GTAC 1 cut(s) 760
CviAII CATG 5 cut(s) 205, 321, 341, 678, 763
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 2 cut(s) 14, 828
DpnI GATC 5 cut(s) 19, 270, 476, 603, 684
DpnII GATC 5 cut(s) 17, 268, 474, 601, 682
DraI TTTAAA 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 287
EaeI YGGCCR 4 cut(s) 289, 551, 593, 632
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 3 cut(s) 560, 641, 947
Eco47III AGCGCT 1 cut(s) 130
Eco57I CTGAAG 3 cut(s) 522, 564, 645
EcoO109I RGGNCCY 1 cut(s) 947
EcoRII CCWGG 1 cut(s) 950
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 5 cut(s) 208, 324, 344, 681, 766
FaqI GGGAC 2 cut(s) 768, 960
FatI CATG 5 cut(s) 204, 320, 340, 677, 762
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 3 cut(s) 104, 516, 843
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 104, 516, 843
FspBI CTAG 1 cut(s) 767
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 104, 516, 843
GsuI CTGGAG 2 cut(s) 528, 570
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 7 cut(s) 11, 291, 451, 529, 553, 595, 634
HhaI GCGC 1 cut(s) 131
Hin1II CATG 5 cut(s) 208, 324, 344, 681, 766
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 6 cut(s) 28, 231, 254, 344, 400, 830
HphI GGTGA 2 cut(s) 226, 227
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 148, 723
Hpy188III TCNNGA 5 cut(s) 190, 336, 545, 587, 626
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 8 cut(s) 147, 546, 588, 627, 669, 711, 866, 926
HpyCH4III ACNGT 3 cut(s) 674, 759, 892
HpyCH4V TGCA 5 cut(s) 4, 240, 303, 372, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 369, 512
HpyF3I CTNAG 2 cut(s) 14, 828
Hsp92II CATG 5 cut(s) 208, 324, 344, 681, 766
HspAI GCGC 1 cut(s) 129
KflI GGGWCCC 1 cut(s) 947
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 5 cut(s) 17, 268, 474, 601, 682
LmnI GCTCC 6 cut(s) 97, 122, 523, 547, 589, 628
Lsp1109I GCAGC 2 cut(s) 527, 854
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 767
MaeIII GTNAC 2 cut(s) 277, 913
MalI GATC 5 cut(s) 19, 270, 476, 603, 684
MboI GATC 5 cut(s) 17, 268, 474, 601, 682
MboII GAAGA 3 cut(s) 37, 860, 881
MfeI CAATTG 3 cut(s) 5, 273, 690
MflI RGATCY 2 cut(s) 268, 474
MhlI GDGCHC 2 cut(s) 359, 963
MlsI TGGCCA 3 cut(s) 291, 595, 634
MluCI AATT 6 cut(s) 5, 97, 159, 170, 273, 690
MluNI TGGCCA 3 cut(s) 291, 595, 634
MlyI GAGTC 2 cut(s) 37, 839
MmeI TCCRAC 1 cut(s) 629
MnlI CCTC 8 cut(s) 345, 379, 414, 765, 832, 846, 895, 898
Mox20I TGGCCA 3 cut(s) 291, 595, 634
MscI TGGCCA 3 cut(s) 291, 595, 634
MseI TTAA 5 cut(s) 158, 434, 743, 864, 973
MslI CAYNNNNRTG 1 cut(s) 767
Msp20I TGGCCA 3 cut(s) 291, 595, 634
MspR9I CCNGG 1 cut(s) 952
MunI CAATTG 3 cut(s) 5, 273, 690
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 1 cut(s) 952
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 246, 369, 512
NdeII GATC 5 cut(s) 17, 268, 474, 601, 682
NlaIII CATG 5 cut(s) 208, 324, 344, 681, 766
NlaIV GGNNCC 4 cut(s) 356, 624, 948, 949
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 1 cut(s) 766
PaqCI CACCTGC 1 cut(s) 245
PasI CCCWGGG 1 cut(s) 951
PctI GAATGC 1 cut(s) 84
PfeI GAWTC 4 cut(s) 231, 254, 344, 400
PkrI GCNGC 3 cut(s) 105, 517, 844
PleI GAGTC 2 cut(s) 36, 838
PpsI GAGTC 2 cut(s) 36, 838
PpuMI RGGWCCY 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 947
Psp6I CCWGG 1 cut(s) 950
PspGI CCWGG 1 cut(s) 950
PspN4I GGNNCC 4 cut(s) 356, 624, 948, 949
PspPI GGNCC 4 cut(s) 10, 560, 641, 947
PspPPI RGGWCCY 1 cut(s) 947
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 2 cut(s) 268, 474
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
RseI CAYNNNNRTG 1 cut(s) 767
SaqAI TTAA 5 cut(s) 158, 434, 743, 864, 973
SatI GCNGC 3 cut(s) 104, 516, 843
Sau3AI GATC 5 cut(s) 17, 268, 474, 601, 682
Sau96I GGNCC 4 cut(s) 10, 560, 641, 947
SchI GAGTC 2 cut(s) 37, 839
ScrFI CCNGG 1 cut(s) 952
SduI GDGCHC 2 cut(s) 359, 963
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 3 cut(s) 459, 513, 810
SinI GGWCC 3 cut(s) 560, 641, 947
SmiI ATTTAAAT 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 6 cut(s) 5, 97, 159, 170, 273, 690
SsiI CCGC 2 cut(s) 103, 879
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 950
StyI CCWWGG 1 cut(s) 118
SwaI ATTTAAAT 1 cut(s) 435
TaaI ACNGT 3 cut(s) 674, 759, 892
TaqI TCGA 2 cut(s) 114, 833
TasI AATT 6 cut(s) 5, 97, 159, 170, 273, 690
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 4 cut(s) 231, 254, 344, 400
Tru1I TTAA 5 cut(s) 158, 434, 743, 864, 973
Tru9I TTAA 5 cut(s) 158, 434, 743, 864, 973
TscAI CASTG 2 cut(s) 472, 832
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 2 cut(s) 515, 842
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 2 cut(s) 666, 882
TspGWI ACGGA 1 cut(s) 932
TspRI CASTG 2 cut(s) 472, 832
VpaK11BI GGWCC 3 cut(s) 560, 641, 947
XapI RAATTY 2 cut(s) 97, 170
XceI RCATGY 1 cut(s) 766
XspI CTAG 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.