Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Forward (+)

18548171 .. 18551630

Gene Structure 3460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAATACACAGAGGTTCGTAAGGCCAAAAGATTTATTATGCTTCGTGATCCTGAAAAAAGACAAGACAATGGTTTAGCTATTGTGCCTGTTGAAGAACAGATGTCTGGCAATAGAGGAAAATCACAAGATTTAAATCAAAAGTCTCGGCCTATACCTGTAGCCAGTGTTGAGAGCCCAGAAAGGCAAGCTGGTCAAAAGTCCGCCACTACTTCAGCTCCATATAGGCCAACTCCTTCAGCTCCAGAGTGGCCGACTGGTCCAAGACCTGCCACTCCTTCAGCTCCAGAGTGGCCAACTGATCCAACACCTACTCCTTCGGCTCCTGAATGGCCGACTGGTCCAAGACCTGCCACTTCTTCAGTACCAAACTGTTCATCTGATCAAACACTTGCCACTCCTTCAACTGCCAATGTCATTCTGAACCAAGTTTGTAGGCTGTTAATACGTGTGGGACAGTACATGCTAGTGAGGATAATAGAAGTTGCCACAGATAAGCTCATTGAAGCTGTAGAAAGAAAAATCAATGAGTCGAGTGAGGCAGCAGAAGAGAGGAACGATGTTAATGAAGAAGGAAGTGGAAATAATACTGTATCAAGTGAGGAGGTTGAAGTGACGGATAGCAATGGAGAAGGAAGCCATCTGGGACCCTGGGTTGTGCTCAACCCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

224

Amino Acids

24.36

Weight (kDa)

5.06

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	277, 358
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	44, 296
AcoI	YGGCCR	3 cut(s)	251, 293, 332
AcuI	CTGAAG	4 cut(s)	198, 222, 264, 345
AfaI	GTAC	2 cut(s)	366, 461
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	95, 405, 506, 611
AjnI	CCWGG	1 cut(s)	650
AluBI	AGCT	7 cut(s)	80, 191, 218, 242, 284, 499, 509
AluI	AGCT	7 cut(s)	80, 191, 218, 242, 284, 499, 509
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	44, 296
AoxI	GGCC	6 cut(s)	24, 149, 227, 251, 293, 332
ApeKI	GCWGC	1 cut(s)	542
AspS9I	GGNCC	3 cut(s)	260, 341, 647
AvaII	GGWCC	3 cut(s)	260, 341, 647
BalI	TGGCCA	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	1 cut(s)	648
BciT130I	CCWGG	1 cut(s)	652
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	2 cut(s)	159, 510
BfuAI	ACCTGC	2 cut(s)	277, 358
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	652
Bme18I	GGWCC	3 cut(s)	260, 341, 647
BmgT120I	GGNCC	3 cut(s)	260, 341, 647
BmiI	GGNNCC	3 cut(s)	324, 648, 649
BmrFI	CCNGG	1 cut(s)	652
BpmI	CTGGAG	2 cut(s)	228, 270
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	650, 651
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 298, 328
Bse1I	ACTGG	3 cut(s)	165, 262, 343
Bse3DI	GCAATG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	650, 651
BseJI	GATNNNNATC	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	631
BseNI	ACTGG	3 cut(s)	165, 262, 343
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	554
BshFI	GGCC	6 cut(s)	26, 151, 229, 253, 295, 334
BsiHKAI	GWGCWC	1 cut(s)	663
BslFI	GGGAC	2 cut(s)	468, 660
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	2 cut(s)	468, 660
BsnI	GGCC	6 cut(s)	26, 151, 229, 253, 295, 334
Bsp1286I	GDGCHC	2 cut(s)	179, 663
Bsp143I	GATC	3 cut(s)	49, 301, 382
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	6 cut(s)	26, 151, 229, 253, 295, 334
BspLI	GGNNCC	3 cut(s)	324, 648, 649
BspMI	ACCTGC	2 cut(s)	277, 358
BspPI	GGATC	2 cut(s)	44, 296
BsrDI	GCAATG	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	165, 262, 343
BssECI	CCNNGG	2 cut(s)	650, 651
BssMI	GATC	3 cut(s)	49, 301, 382
Bst2UI	CCWGG	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	374, 459, 592
Bst6I	CTCTTC	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	672
BstKTI	GATC	3 cut(s)	52, 304, 385
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	49, 301, 382
BstNI	CCWGG	1 cut(s)	652
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	2 cut(s)	159, 510
BstV1I	GCAGC	1 cut(s)	554
BsuRI	GGCC	6 cut(s)	26, 151, 229, 253, 295, 334
BtsIMutI	CAGTG	1 cut(s)	172
BveI	ACCTGC	2 cut(s)	277, 358
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	260, 341, 647
Csp6I	GTAC	2 cut(s)	365, 460
CviAII	CATG	1 cut(s)	463
CviQI	GTAC	2 cut(s)	365, 460
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	3 cut(s)	51, 303, 384
DpnII	GATC	3 cut(s)	49, 301, 382
DraI	TTTAAA	1 cut(s)	135
EaeI	YGGCCR	3 cut(s)	251, 293, 332
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	3 cut(s)	260, 341, 647
Eco57I	CTGAAG	4 cut(s)	198, 222, 264, 345
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	1 cut(s)	466
FaiI	YATR	5 cut(s)	41, 155, 223, 225, 464
FaqI	GGGAC	2 cut(s)	468, 660
FatI	CATG	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	543
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	1 cut(s)	543
GsuI	CTGGAG	2 cut(s)	228, 270
HaeIII	GGCC	6 cut(s)	26, 151, 229, 253, 295, 334
Hin1II	CATG	1 cut(s)	466
HinfI	GANTC	1 cut(s)	530
Hpy188I	TCNGA	2 cut(s)	382, 423
Hpy188III	TCNNGA	5 cut(s)	47, 53, 245, 287, 326
HpyAV	CCTTC	6 cut(s)	246, 288, 327, 411, 566, 626
HpyCH4III	ACNGT	3 cut(s)	374, 459, 592
HpyCH4IV	ACGT	1 cut(s)	448
HpyF3I	CTNAG	1 cut(s)	672
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	1 cut(s)	466
KflI	GGGWCCC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	49, 301, 382
LmnI	GCTCC	4 cut(s)	223, 247, 289, 328
Lsp1109I	GCAGC	1 cut(s)	554
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	3 cut(s)	51, 303, 384
MboI	GATC	3 cut(s)	49, 301, 382
MboII	GAAGA	4 cut(s)	107, 351, 560, 581
MhlI	GDGCHC	2 cut(s)	179, 663
MlsI	TGGCCA	1 cut(s)	295
MluNI	TGGCCA	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	7, 110, 465, 532, 546, 595, 598
Mox20I	TGGCCA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	295
MseI	TTAA	3 cut(s)	134, 443, 564
MslI	CAYNNNNRTG	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	652
NdeII	GATC	3 cut(s)	49, 301, 382
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	3 cut(s)	324, 648, 649
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	651
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
Ppu21I	YACGTR	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	3 cut(s)	324, 648, 649
PspPI	GGNCC	3 cut(s)	260, 341, 647
PspPPI	RGGWCCY	1 cut(s)	647
RsaI	GTAC	2 cut(s)	366, 461
RsaNI	GTAC	2 cut(s)	365, 460
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	3 cut(s)	134, 443, 564
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	3 cut(s)	49, 301, 382
Sau96I	GGNCC	3 cut(s)	260, 341, 647
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	652
SduI	GDGCHC	2 cut(s)	179, 663
SfcI	CTRYAG	2 cut(s)	159, 510
SinI	GGWCC	3 cut(s)	260, 341, 647
SmiI	ATTTAAAT	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	467
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	650
SwaI	ATTTAAAT	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	374, 459, 592
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	533
TatI	WGTACW	1 cut(s)	459
Tru1I	TTAA	3 cut(s)	134, 443, 564
Tru9I	TTAA	3 cut(s)	134, 443, 564
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	3 cut(s)	17, 366, 582
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	3 cut(s)	260, 341, 647
XceI	RCATGY	1 cut(s)	466
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.