FvH4_2g08010

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004525
Physical Location & Seq
Reverse (-)
6910165 .. 6912310
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08010.t1

Sequence Viewer

Length: 729 bp
ATGGATGGGGGTGATGGTGGTAGTGGTTTCACGTGCAACATTTGCTTTGAATCTGCTGATAAAGATCCAATTGTAACACCGTGTGGTCACCTTTACTGCAAGTCTTGTATATATACTTGGCTTCGTAACCCAAGACATGATTCCAAGAGGTGCCCTTGCCCGGTTTGTAATGCCAATATACAGGAGAACAGACTGATTCCTCTGTATGGAATAGGGAAATCACAGGATTTGCATCAAAATTCTAGGTCTGTACCTGTAGACAGTGTTGAGAGTCTGGAAAGGCAAGCTGGTCAAAAGTCTGCCACTCCTCCGGCTCCAAATAGGCCAACTCCTTCAGCTCTGGAGTGGCCATCTGATCCAAGACCCACTCCTTCGGCTCCCGAATGGCCGACTGATCCAAGTCCTGCCACTCCTTCAGCTCCAAACTGTCCTACTGATCACACACTTGCCACTTCTTCAACTGCCAATGTTATTCTGAACCAAGTTTGTAGGCTGTTAATACGTGTGGGACAGTACATGCTAGTGAGGATAATAGAAGTTGCCACAGATAAGCTCATTGAAGCTGTGGAAACGAAACTCAATGAGTTGAATGAGGCAGTAGAAGAGAGAAACAATGTTAATGGAGAAGGAAGTGGAAATGATACTGGATCAAGTGACGAGGTTGAAGTGATGGATAGCAATGGAGAAGGAAGCCATCTGGGACCCTGGGTTGTGCTGGACCAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

243

Amino Acids

26.16

Weight (kDa)

4.75

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 11 - 57 2e-07 Ring finger domain
zf-C3HC4_3 PF13920 11 - 62 1.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 12 - 52 1.7e-09 RING-type zinc-finger
zf-C3HC4 PF00097 12 - 56 4.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 12 - 52 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 12 - 57 6.3e-07 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 258
AclWI GGATC 4 cut(s) 59, 350, 389, 655
AcoI YGGCCR 2 cut(s) 347, 386
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 318, 399
AcvI CACGTG 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 2 cut(s) 252, 515
AfiI CCNNNNNNNGG 2 cut(s) 160, 206
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 5 cut(s) 50, 459, 560, 589, 665
AjnI CCWGG 1 cut(s) 704
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 5 cut(s) 287, 338, 419, 553, 563
AluI AGCT 5 cut(s) 287, 338, 419, 553, 563
AlwI GGATC 4 cut(s) 59, 350, 389, 655
AoxI GGCC 3 cut(s) 323, 347, 386
ApoI RAATTY 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 701, 718
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 23, 80
AvaII GGWCC 2 cut(s) 701, 718
BaeGI GKGCMC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 349
BanI GGYRCC 1 cut(s) 150
BbrPI CACGTG 1 cut(s) 33
BccI CCATC 4 cut(s) 8, 358, 664, 702
BciT130I CCWGG 1 cut(s) 706
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 2 cut(s) 243, 521
BfmI CTRYAG 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 161, 706
Bme18I GGWCC 2 cut(s) 701, 718
BmgT120I GGNCC 2 cut(s) 701, 718
BmiI GGNNCC 5 cut(s) 152, 315, 378, 702, 703
BmrFI CCNGG 2 cut(s) 161, 706
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 2 cut(s) 33, 503
BsaBI GATNNNNATC 2 cut(s) 63, 231
BsaJI CCNNGG 2 cut(s) 704, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 206
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 685
Bse8I GATNNNNATC 2 cut(s) 63, 231
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 2 cut(s) 704, 705
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 63, 231
BseLI CCNNNNNNNGG 2 cut(s) 160, 206
BseMI GCAATG 1 cut(s) 685
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 155
BshFI GGCC 3 cut(s) 325, 349, 388
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 161, 311
BslFI GGGAC 2 cut(s) 522, 714
BslI CCNNNNNNNGG 2 cut(s) 160, 206
BsmFI GGGAC 2 cut(s) 522, 714
BsnI GGCC 3 cut(s) 325, 349, 388
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 5 cut(s) 64, 355, 394, 436, 647
BspANI GGCC 3 cut(s) 325, 349, 388
BspLI GGNNCC 5 cut(s) 152, 315, 378, 702, 703
BspPI GGATC 4 cut(s) 59, 350, 389, 655
BspT107I GGYRCC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 685
BsrI ACTGG 1 cut(s) 649
BssECI CCNNGG 2 cut(s) 704, 705
BssMI GATC 5 cut(s) 64, 355, 394, 436, 647
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 4 cut(s) 81, 263, 428, 513
Bst6I CTCTTC 1 cut(s) 597
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 2 cut(s) 33, 503
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 726
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 5 cut(s) 67, 358, 397, 439, 650
BstMBI GATC 5 cut(s) 64, 355, 394, 436, 647
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 706
BstNSI RCATGY 1 cut(s) 520
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 159, 704
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 3 cut(s) 325, 349, 388
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 701, 718
Csp6I GTAC 2 cut(s) 251, 514
CviAII CATG 2 cut(s) 137, 517
CviQI GTAC 2 cut(s) 251, 514
DdeI CTNAG 1 cut(s) 726
DpnI GATC 5 cut(s) 66, 357, 396, 438, 649
DpnII GATC 5 cut(s) 64, 355, 394, 436, 647
DraIII CACNNNGTG 1 cut(s) 83
EaeI YGGCCR 2 cut(s) 347, 386
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 701, 718
Eco57I CTGAAG 2 cut(s) 318, 399
Eco72I CACGTG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 701
EcoO65I GGTNACC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 704
FaeI CATG 2 cut(s) 140, 520
FaiI YATR 7 cut(s) 110, 112, 114, 138, 179, 207, 518
FaqI GGGAC 2 cut(s) 522, 714
FatI CATG 2 cut(s) 136, 516
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 258
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 243, 521
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 3 cut(s) 325, 349, 388
HapII CCGG 2 cut(s) 161, 311
Hin1II CATG 2 cut(s) 140, 520
HinfI GANTC 4 cut(s) 50, 140, 196, 271
HpaII CCGG 2 cut(s) 161, 311
HphI GGTGA 2 cut(s) 23, 80
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 355, 477
Hpy188III TCNNGA 3 cut(s) 275, 341, 380
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 5 cut(s) 342, 381, 423, 620, 680
HpyCH4III ACNGT 4 cut(s) 81, 263, 428, 513
HpyCH4IV ACGT 2 cut(s) 32, 502
HpyCH4V TGCA 3 cut(s) 36, 99, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 726
HpySE526I ACGT 2 cut(s) 32, 502
Hsp92II CATG 2 cut(s) 140, 520
KflI GGGWCCC 1 cut(s) 701
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 5 cut(s) 64, 355, 394, 436, 647
LmnI GCTCC 3 cut(s) 319, 382, 424
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 243, 521
MaeII ACGT 2 cut(s) 32, 502
MaeIII GTNAC 4 cut(s) 73, 86, 125, 653
MalI GATC 5 cut(s) 66, 357, 396, 438, 649
MboI GATC 5 cut(s) 64, 355, 394, 436, 647
MboII GAAGA 2 cut(s) 447, 614
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 2 cut(s) 69, 238
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 6 cut(s) 141, 210, 318, 519, 586, 652
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MseI TTAA 2 cut(s) 497, 618
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 2 cut(s) 161, 311
MspR9I CCNGG 2 cut(s) 161, 706
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 706
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 161
NdeII GATC 5 cut(s) 64, 355, 394, 436, 647
NlaIII CATG 2 cut(s) 140, 520
NlaIV GGNNCC 5 cut(s) 152, 315, 378, 702, 703
NmuCI GTSAC 2 cut(s) 86, 653
NspI RCATGY 1 cut(s) 520
PasI CCCWGGG 1 cut(s) 705
PfeI GAWTC 3 cut(s) 50, 140, 196
PleI GAGTC 1 cut(s) 279
PmaCI CACGTG 1 cut(s) 33
PmlI CACGTG 1 cut(s) 33
PpsI GAGTC 1 cut(s) 279
Ppu21I YACGTR 2 cut(s) 33, 503
PpuMI RGGWCCY 1 cut(s) 701
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 704
PspCI CACGTG 1 cut(s) 33
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 5 cut(s) 152, 315, 378, 702, 703
PspPI GGNCC 2 cut(s) 701, 718
PspPPI RGGWCCY 1 cut(s) 701
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 2 cut(s) 252, 515
RsaNI GTAC 2 cut(s) 251, 514
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 2 cut(s) 497, 618
Sau3AI GATC 5 cut(s) 64, 355, 394, 436, 647
Sau96I GGNCC 2 cut(s) 701, 718
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 2 cut(s) 161, 706
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 2 cut(s) 701, 718
SmiMI CAYNNNNRTG 1 cut(s) 521
Sse9I AATT 2 cut(s) 69, 238
SspMI CTAG 2 cut(s) 243, 521
StyD4I CCNGG 2 cut(s) 159, 704
TaaI ACNGT 4 cut(s) 81, 263, 428, 513
TaiI ACGT 2 cut(s) 35, 505
TasI AATT 2 cut(s) 69, 238
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 3 cut(s) 50, 140, 196
Tru1I TTAA 2 cut(s) 497, 618
Tru9I TTAA 2 cut(s) 497, 618
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 86, 653
Tsp45I GTSAC 2 cut(s) 86, 653
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 2 cut(s) 701, 718
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 2 cut(s) 243, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.