Belongs to the CAP family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34490 AT4G34490 |
| fragaria_vesca | FvH4_2g08710 FvH4_2g08710 |
| malus_domestica | MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1 |
| prunus_persica | Prupe.8G097900_v2.0.a1 |
| pyrus_communis | pycom05g05800 pycom10g06010 |
| rosa_chinensis | RchiOBHm_Chr6g0264151 |
| rosa_laevigata | RLG00000014286 RLG00000014287 |
| rosa_multiflora | Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006 |
| rosa_roxburghii | Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570 |
| rosa_rugosa | Rorug04G0194500 Rorug06G0007800 |
| rosa_samantha | Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200 |
| rosa_wichuraiana | Rw6G011200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 700, 925 |
| AbsI | CCTCGAGG | 1 cut(s) | 47 |
| Acc36I | ACCTGC | 2 cut(s) | 700, 925 |
| Acc65I | GGTACC | 2 cut(s) | 884, 1306 |
| AccB1I | GGYRCC | 3 cut(s) | 679, 884, 1306 |
| AccII | CGCG | 4 cut(s) | 43, 83, 101, 166 |
| AciI | CCGC | 8 cut(s) | 35, 78, 81, 83, 104, 166, 170, 173 |
| AclWI | GGATC | 3 cut(s) | 104, 117, 141 |
| AcsI | RAATTY | 3 cut(s) | 296, 488, 1071 |
| AcuI | CTGAAG | 3 cut(s) | 323, 709, 801 |
| AcvI | CACGTG | 1 cut(s) | 1369 |
| AdeI | CACNNNGTG | 1 cut(s) | 686 |
| AfaI | GTAC | 3 cut(s) | 149, 886, 1308 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 426, 683, 766, 767, 1177 |
| AflIII | ACRYGT | 2 cut(s) | 460, 1368 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 819 |
| AjnI | CCWGG | 5 cut(s) | 129, 577, 682, 888, 1309 |
| AluBI | AGCT | 7 cut(s) | 13, 404, 557, 644, 779, 952, 1226 |
| AluI | AGCT | 7 cut(s) | 13, 404, 557, 644, 779, 952, 1226 |
| Alw21I | GWGCWC | 2 cut(s) | 691, 916 |
| Alw26I | GTCTC | 1 cut(s) | 401 |
| Alw44I | GTGCAC | 2 cut(s) | 687, 912 |
| AlwI | GGATC | 3 cut(s) | 104, 117, 141 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 136 |
| Ama87I | CYCGRG | 2 cut(s) | 47, 64 |
| AoxI | GGCC | 2 cut(s) | 123, 549 |
| ApaLI | GTGCAC | 2 cut(s) | 687, 912 |
| ApeKI | GCWGC | 6 cut(s) | 230, 386, 653, 776, 1145, 1230 |
| ApoI | RAATTY | 3 cut(s) | 296, 488, 1071 |
| Asp718I | GGTACC | 2 cut(s) | 884, 1306 |
| AspLEI | GCGC | 3 cut(s) | 45, 55, 103 |
| AspS9I | GGNCC | 4 cut(s) | 241, 549, 617, 935 |
| AsuC2I | CCSGG | 1 cut(s) | 677 |
| AsuHPI | GGTGA | 1 cut(s) | 196 |
| AvaI | CYCGRG | 2 cut(s) | 47, 64 |
| AvaII | GGWCC | 3 cut(s) | 241, 617, 935 |
| BaeGI | GKGCMC | 2 cut(s) | 691, 916 |
| BamHI | GGATCC | 1 cut(s) | 109 |
| BanI | GGYRCC | 3 cut(s) | 679, 884, 1306 |
| BbrPI | CACGTG | 1 cut(s) | 1369 |
| BbsI | GAAGAC | 1 cut(s) | 854 |
| Bbv12I | GWGCWC | 2 cut(s) | 691, 916 |
| BbvI | GCAGC | 6 cut(s) | 217, 373, 640, 788, 1132, 1217 |
| BccI | CCATC | 7 cut(s) | 475, 667, 718, 766, 1111, 1319, 1373 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1014, 1048, 1156, 1190 |
| BciT130I | CCWGG | 5 cut(s) | 131, 579, 684, 890, 1311 |
| BcnI | CCSGG | 1 cut(s) | 677 |
| BcoDI | GTCTC | 1 cut(s) | 401 |
| BfaI | CTAG | 1 cut(s) | 156 |
| BfoI | RGCGCY | 1 cut(s) | 56 |
| BfuAI | ACCTGC | 2 cut(s) | 700, 925 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 83 |
| Bme1390I | CCNGG | 6 cut(s) | 131, 579, 677, 684, 890, 1311 |
| Bme18I | GGWCC | 3 cut(s) | 241, 617, 935 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 819 |
| BmeT110I | CYCGRG | 2 cut(s) | 47, 64 |
| BmgT120I | GGNCC | 4 cut(s) | 241, 549, 617, 935 |
| BmiI | GGNNCC | 5 cut(s) | 111, 618, 681, 886, 1308 |
| BmrFI | CCNGG | 6 cut(s) | 131, 579, 677, 684, 890, 1311 |
| BmrI | ACTGGG | 1 cut(s) | 882 |
| BmsI | GCATC | 3 cut(s) | 1012, 1040, 1243 |
| BmuI | ACTGGG | 1 cut(s) | 882 |
| BpiI | GAAGAC | 1 cut(s) | 854 |
| BpmI | CTGGAG | 2 cut(s) | 646, 1383 |
| BpuEI | CTTGAG | 1 cut(s) | 47 |
| BpuMI | CCSGG | 1 cut(s) | 677 |
| BsaAI | YACGTR | 1 cut(s) | 1369 |
| BsaJI | CCNNGG | 3 cut(s) | 81, 675, 888 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 640, 670 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 426, 683, 766, 767, 1177 |
| Bse118I | RCCGGY | 1 cut(s) | 635 |
| Bse1I | ACTGG | 4 cut(s) | 620, 877, 909, 1400 |
| Bse3DI | GCAATG | 1 cut(s) | 1346 |
| BseBI | CCWGG | 5 cut(s) | 131, 579, 684, 890, 1311 |
| BseDI | CCNNGG | 3 cut(s) | 81, 675, 888 |
| BseGI | GGATG | 3 cut(s) | 777, 1055, 1141 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 426, 683, 766, 767, 1177 |
| BseMI | GCAATG | 1 cut(s) | 1346 |
| BseMII | CTCAG | 4 cut(s) | 414, 755, 815, 1425 |
| BseNI | ACTGG | 4 cut(s) | 620, 877, 909, 1400 |
| BseRI | GAGGAG | 4 cut(s) | 20, 233, 687, 690 |
| BseSI | GKGCMC | 2 cut(s) | 691, 916 |
| BseXI | GCAGC | 6 cut(s) | 217, 373, 640, 788, 1132, 1217 |
| Bsh1236I | CGCG | 4 cut(s) | 43, 83, 101, 166 |
| BshFI | GGCC | 2 cut(s) | 125, 551 |
| BshNI | GGYRCC | 3 cut(s) | 679, 884, 1306 |
| BsiHKAI | GWGCWC | 2 cut(s) | 691, 916 |
| BsiHKCI | CYCGRG | 2 cut(s) | 47, 64 |
| BsiSI | CCGG | 2 cut(s) | 636, 677 |
| BslFI | GGGAC | 1 cut(s) | 201 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 426, 683, 766, 767, 1177 |
| BsmAI | GTCTC | 1 cut(s) | 401 |
| BsmFI | GGGAC | 1 cut(s) | 201 |
| BsnI | GGCC | 2 cut(s) | 125, 551 |
| BsoBI | CYCGRG | 2 cut(s) | 47, 64 |
| Bsp1286I | GDGCHC | 2 cut(s) | 691, 916 |
| Bsp143I | GATC | 4 cut(s) | 109, 133, 356, 792 |
| BspACI | CCGC | 8 cut(s) | 35, 78, 81, 83, 104, 166, 170, 173 |
| BspANI | GGCC | 2 cut(s) | 125, 551 |
| BspCNI | CTCAG | 4 cut(s) | 413, 754, 816, 1424 |
| BspFNI | CGCG | 4 cut(s) | 43, 83, 101, 166 |
| BspLI | GGNNCC | 5 cut(s) | 111, 618, 681, 886, 1308 |
| BspMI | ACCTGC | 2 cut(s) | 700, 925 |
| BspPI | GGATC | 3 cut(s) | 104, 117, 141 |
| BspT107I | GGYRCC | 3 cut(s) | 679, 884, 1306 |
| BsrDI | GCAATG | 1 cut(s) | 1346 |
| BsrFI | RCCGGY | 1 cut(s) | 635 |
| BsrI | ACTGG | 4 cut(s) | 620, 877, 909, 1400 |
| BssAI | RCCGGY | 1 cut(s) | 635 |
| BssECI | CCNNGG | 3 cut(s) | 81, 675, 888 |
| BssMI | GATC | 4 cut(s) | 109, 133, 356, 792 |
| Bst2UI | CCWGG | 5 cut(s) | 131, 579, 684, 890, 1311 |
| Bst4CI | ACNGT | 6 cut(s) | 395, 860, 1032, 1172, 1207, 1359 |
| Bst6I | CTCTTC | 2 cut(s) | 374, 728 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 416, 686, 1348 |
| BstBAI | YACGTR | 1 cut(s) | 1369 |
| BstC8I | GCNNGC | 5 cut(s) | 168, 449, 806, 1228, 1344 |
| BstDEI | CTNAG | 5 cut(s) | 400, 741, 824, 1113, 1411 |
| BstDSI | CCRYGG | 1 cut(s) | 81 |
| BstF5I | GGATG | 3 cut(s) | 777, 1055, 1141 |
| BstFNI | CGCG | 4 cut(s) | 43, 83, 101, 166 |
| BstH2I | RGCGCY | 1 cut(s) | 56 |
| BstHHI | GCGC | 3 cut(s) | 45, 55, 103 |
| BstKTI | GATC | 4 cut(s) | 112, 136, 359, 795 |
| BstMAI | GTCTC | 1 cut(s) | 401 |
| BstMBI | GATC | 4 cut(s) | 109, 133, 356, 792 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 83, 230, 416, 650, 686, 713, 1348 |
| BstNI | CCWGG | 5 cut(s) | 131, 579, 684, 890, 1311 |
| BstNSI | RCATGY | 3 cut(s) | 451, 464, 1346 |
| BstSCI | CCNGG | 6 cut(s) | 129, 577, 675, 682, 888, 1309 |
| BstSLI | GKGCMC | 2 cut(s) | 691, 916 |
| BstUI | CGCG | 4 cut(s) | 43, 83, 101, 166 |
| BstV1I | GCAGC | 6 cut(s) | 217, 373, 640, 788, 1132, 1217 |
| BstV2I | GAAGAC | 1 cut(s) | 854 |
| BstX2I | RGATCY | 2 cut(s) | 109, 133 |
| BstYI | RGATCY | 2 cut(s) | 109, 133 |
| BsuRI | GGCC | 2 cut(s) | 125, 551 |
| BtgI | CCRYGG | 1 cut(s) | 81 |
| BtsCI | GGATG | 3 cut(s) | 777, 1055, 1141 |
| BtsIMutI | CAGTG | 1 cut(s) | 916 |
| BveI | ACCTGC | 2 cut(s) | 700, 925 |
| Cac8I | GCNNGC | 5 cut(s) | 168, 449, 806, 1228, 1344 |
| CaiI | CAGNNNCTG | 1 cut(s) | 136 |
| CfoI | GCGC | 3 cut(s) | 45, 55, 103 |
| Cfr10I | RCCGGY | 1 cut(s) | 635 |
| Cfr13I | GGNCC | 4 cut(s) | 241, 549, 617, 935 |
| Cfr42I | CCGCGG | 1 cut(s) | 84 |
| CseI | GACGC | 1 cut(s) | 107 |
| CsiI | ACCWGGT | 3 cut(s) | 577, 682, 1309 |
| Csp6I | GTAC | 3 cut(s) | 148, 885, 1307 |
| CviAII | CATG | 5 cut(s) | 411, 448, 461, 539, 1343 |
| CviQI | GTAC | 3 cut(s) | 148, 885, 1307 |
| DdeI | CTNAG | 5 cut(s) | 400, 741, 824, 1113, 1411 |
| DpnI | GATC | 4 cut(s) | 111, 135, 358, 794 |
| DpnII | GATC | 4 cut(s) | 109, 133, 356, 792 |
| DraIII | CACNNNGTG | 1 cut(s) | 686 |
| DriI | GACNNNNNGTC | 1 cut(s) | 819 |
| Eam1104I | CTCTTC | 2 cut(s) | 374, 728 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 819 |
| EarI | CTCTTC | 2 cut(s) | 374, 728 |
| EciI | GGCGGA | 1 cut(s) | 188 |
| Eco32I | GATATC | 1 cut(s) | 202 |
| Eco47I | GGWCC | 3 cut(s) | 241, 617, 935 |
| Eco57I | CTGAAG | 3 cut(s) | 323, 709, 801 |
| Eco72I | CACGTG | 1 cut(s) | 1369 |
| Eco88I | CYCGRG | 2 cut(s) | 47, 64 |
| EcoO109I | RGGNCCY | 2 cut(s) | 241, 935 |
| EcoRII | CCWGG | 5 cut(s) | 129, 577, 682, 888, 1309 |
| EcoRV | GATATC | 1 cut(s) | 202 |
| EcoT22I | ATGCAT | 1 cut(s) | 1348 |
| FaeI | CATG | 5 cut(s) | 414, 451, 464, 542, 1346 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 986, 1018 |
| FaqI | GGGAC | 1 cut(s) | 201 |
| FatI | CATG | 5 cut(s) | 410, 447, 460, 538, 1342 |
| FauI | CCCGC | 1 cut(s) | 159 |
| FokI | GGATG | 3 cut(s) | 784, 1062, 1148 |
| FspBI | CTAG | 1 cut(s) | 156 |
| GlaI | GCGC | 3 cut(s) | 44, 54, 102 |
| GsuI | CTGGAG | 2 cut(s) | 646, 1383 |
| HaeII | RGCGCY | 1 cut(s) | 56 |
| HaeIII | GGCC | 2 cut(s) | 125, 551 |
| HapII | CCGG | 2 cut(s) | 636, 677 |
| HgaI | GACGC | 1 cut(s) | 107 |
| HhaI | GCGC | 3 cut(s) | 45, 55, 103 |
| Hin1II | CATG | 5 cut(s) | 414, 451, 464, 542, 1346 |
| Hin6I | GCGC | 3 cut(s) | 43, 53, 101 |
| HinP1I | GCGC | 3 cut(s) | 43, 53, 101 |
| HindIII | AAGCTT | 1 cut(s) | 11 |
| HinfI | GANTC | 5 cut(s) | 29, 505, 628, 982, 1058 |
| HpaII | CCGG | 2 cut(s) | 636, 677 |
| HphI | GGTGA | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 4 cut(s) | 689, 914, 1045, 1087 |
| Hpy188I | TCNGA | 8 cut(s) | 138, 303, 361, 733, 825, 942, 966, 987 |
| Hpy188III | TCNNGA | 4 cut(s) | 66, 625, 788, 1133 |
| Hpy8I | GTNNAC | 4 cut(s) | 689, 914, 1045, 1087 |
| Hpy99I | CGWCG | 5 cut(s) | 98, 101, 118, 155, 515 |
| HpyAV | CCTTC | 4 cut(s) | 70, 136, 232, 341 |
| HpyCH4III | ACNGT | 6 cut(s) | 395, 860, 1032, 1172, 1207, 1359 |
| HpyCH4IV | ACGT | 2 cut(s) | 150, 1368 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 83, 230, 416, 650, 686, 713, 1348 |
| HpyF3I | CTNAG | 5 cut(s) | 400, 741, 824, 1113, 1411 |
| HpySE526I | ACGT | 2 cut(s) | 150, 1368 |
| Hsp92II | CATG | 5 cut(s) | 414, 451, 464, 542, 1346 |
| HspAI | GCGC | 3 cut(s) | 43, 53, 101 |
| KpnI | GGTACC | 2 cut(s) | 888, 1310 |
| KspI | CCGCGG | 1 cut(s) | 84 |
| Kzo9I | GATC | 4 cut(s) | 109, 133, 356, 792 |
| LmnI | GCTCC | 3 cut(s) | 661, 700, 712 |
| Lsp1109I | GCAGC | 6 cut(s) | 217, 373, 640, 788, 1132, 1217 |
| LweI | GCATC | 3 cut(s) | 1012, 1040, 1243 |
| MabI | ACCWGGT | 3 cut(s) | 577, 682, 1309 |
| MaeI | CTAG | 1 cut(s) | 156 |
| MaeII | ACGT | 2 cut(s) | 150, 1368 |
| MaeIII | GTNAC | 4 cut(s) | 37, 646, 811, 832 |
| MalI | GATC | 4 cut(s) | 111, 135, 358, 794 |
| MboI | GATC | 4 cut(s) | 109, 133, 356, 792 |
| MboII | GAAGA | 7 cut(s) | 190, 358, 391, 479, 715, 741, 859 |
| MfeI | CAATTG | 2 cut(s) | 1098, 1212 |
| MflI | RGATCY | 2 cut(s) | 109, 133 |
| MhlI | GDGCHC | 2 cut(s) | 691, 916 |
| MluCI | AATT | 9 cut(s) | 296, 338, 488, 796, 1071, 1098, 1162, 1212, 1235 |
| MlyI | GAGTC | 3 cut(s) | 38, 637, 1052 |
| MmeI | TCCRAC | 3 cut(s) | 177, 656, 944 |
| Mph1103I | ATGCAT | 1 cut(s) | 1348 |
| MseI | TTAA | 3 cut(s) | 597, 1161, 1244 |
| MslI | CAYNNNNRTG | 2 cut(s) | 909, 1115 |
| MspA1I | CMGCKG | 5 cut(s) | 83, 106, 644, 779, 1226 |
| MspI | CCGG | 2 cut(s) | 636, 677 |
| MspR9I | CCNGG | 6 cut(s) | 131, 579, 677, 684, 890, 1311 |
| MunI | CAATTG | 2 cut(s) | 1098, 1212 |
| MvaI | CCWGG | 5 cut(s) | 131, 579, 684, 890, 1311 |
| MvnI | CGCG | 4 cut(s) | 43, 83, 101, 166 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 83, 230, 416, 650, 686, 713, 1348 |
| NciI | CCSGG | 1 cut(s) | 677 |
| NdeII | GATC | 4 cut(s) | 109, 133, 356, 792 |
| NlaIII | CATG | 5 cut(s) | 414, 451, 464, 542, 1346 |
| NlaIV | GGNNCC | 5 cut(s) | 111, 618, 681, 886, 1308 |
| NmuCI | GTSAC | 3 cut(s) | 37, 811, 832 |
| NsiI | ATGCAT | 1 cut(s) | 1348 |
| NspI | RCATGY | 3 cut(s) | 451, 464, 1346 |
| PaeI | GCATGC | 2 cut(s) | 451, 1346 |
| PaeR7I | CTCGAG | 1 cut(s) | 47 |
| PaqCI | CACCTGC | 2 cut(s) | 700, 925 |
| PciI | ACATGT | 1 cut(s) | 460 |
| PfeI | GAWTC | 2 cut(s) | 505, 982 |
| PfoI | TCCNGGA | 1 cut(s) | 129 |
| PleI | GAGTC | 3 cut(s) | 37, 636, 1052 |
| PmaCI | CACGTG | 1 cut(s) | 1369 |
| PmlI | CACGTG | 1 cut(s) | 1369 |
| PpsI | GAGTC | 3 cut(s) | 37, 636, 1052 |
| Ppu21I | YACGTR | 1 cut(s) | 1369 |
| PpuMI | RGGWCCY | 2 cut(s) | 241, 935 |
| PscI | ACATGT | 1 cut(s) | 460 |
| Psp5II | RGGWCCY | 2 cut(s) | 241, 935 |
| Psp6I | CCWGG | 5 cut(s) | 129, 577, 682, 888, 1309 |
| PspCI | CACGTG | 1 cut(s) | 1369 |
| PspGI | CCWGG | 5 cut(s) | 129, 577, 682, 888, 1309 |
| PspN4I | GGNNCC | 5 cut(s) | 111, 618, 681, 886, 1308 |
| PspPI | GGNCC | 4 cut(s) | 241, 549, 617, 935 |
| PspPPI | RGGWCCY | 2 cut(s) | 241, 935 |
| PspXI | VCTCGAGB | 1 cut(s) | 47 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 558, 590 |
| PstNI | CAGNNNCTG | 1 cut(s) | 136 |
| PsuI | RGATCY | 2 cut(s) | 109, 133 |
| PvuII | CAGCTG | 3 cut(s) | 644, 779, 1226 |
| RsaI | GTAC | 3 cut(s) | 149, 886, 1308 |
| RsaNI | GTAC | 3 cut(s) | 148, 885, 1307 |
| RseI | CAYNNNNRTG | 2 cut(s) | 909, 1115 |
| SacII | CCGCGG | 1 cut(s) | 84 |
| SaqAI | TTAA | 3 cut(s) | 597, 1161, 1244 |
| Sau3AI | GATC | 4 cut(s) | 109, 133, 356, 792 |
| Sau96I | GGNCC | 4 cut(s) | 241, 549, 617, 935 |
| SchI | GAGTC | 3 cut(s) | 38, 637, 1052 |
| ScrFI | CCNGG | 6 cut(s) | 131, 579, 677, 684, 890, 1311 |
| SduI | GDGCHC | 2 cut(s) | 691, 916 |
| SexAI | ACCWGGT | 3 cut(s) | 577, 682, 1309 |
| SfaNI | GCATC | 3 cut(s) | 1012, 1040, 1243 |
| Sfr274I | CTCGAG | 1 cut(s) | 47 |
| Sfr303I | CCGCGG | 1 cut(s) | 84 |
| SgrBI | CCGCGG | 1 cut(s) | 84 |
| SinI | GGWCC | 3 cut(s) | 241, 617, 935 |
| SlaI | CTCGAG | 1 cut(s) | 47 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 909, 1115 |
| SmlI | CTYRAG | 2 cut(s) | 26, 47 |
| SmoI | CTYRAG | 2 cut(s) | 26, 47 |
| SphI | GCATGC | 2 cut(s) | 451, 1346 |
| Sse9I | AATT | 9 cut(s) | 296, 338, 488, 796, 1071, 1098, 1162, 1212, 1235 |
| SsiI | CCGC | 8 cut(s) | 35, 78, 81, 83, 104, 166, 170, 173 |
| SspMI | CTAG | 1 cut(s) | 156 |
| StyD4I | CCNGG | 6 cut(s) | 129, 577, 675, 682, 888, 1309 |
| TaaI | ACNGT | 6 cut(s) | 395, 860, 1032, 1172, 1207, 1359 |
| TaiI | ACGT | 2 cut(s) | 153, 1371 |
| TaqI | TCGA | 4 cut(s) | 48, 216, 513, 1176 |
| TasI | AATT | 9 cut(s) | 296, 338, 488, 796, 1071, 1098, 1162, 1212, 1235 |
| TauI | GCSGC | 5 cut(s) | 80, 83, 86, 106, 173 |
| TfiI | GAWTC | 2 cut(s) | 505, 982 |
| Tru1I | TTAA | 3 cut(s) | 597, 1161, 1244 |
| Tru9I | TTAA | 3 cut(s) | 597, 1161, 1244 |
| TscAI | CASTG | 1 cut(s) | 916 |
| TseFI | GTSAC | 3 cut(s) | 37, 811, 832 |
| TseI | GCWGC | 6 cut(s) | 230, 386, 653, 776, 1145, 1230 |
| Tsp45I | GTSAC | 3 cut(s) | 37, 811, 832 |
| TspDTI | ATGAA | 2 cut(s) | 741, 860 |
| TspGWI | ACGGA | 3 cut(s) | 102, 600, 1062 |
| TspRI | CASTG | 1 cut(s) | 916 |
| VneI | GTGCAC | 2 cut(s) | 687, 912 |
| VpaK11BI | GGWCC | 3 cut(s) | 241, 617, 935 |
| XapI | RAATTY | 3 cut(s) | 296, 488, 1071 |
| XceI | RCATGY | 3 cut(s) | 451, 464, 1346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 137 |
| XhoI | CTCGAG | 1 cut(s) | 47 |
| XspI | CTAG | 1 cut(s) | 156 |
| Zsp2I | ATGCAT | 1 cut(s) | 1348 |