Belongs to the CAP family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34490 AT4G34490 |
| fragaria_vesca | FvH4_2g08710 FvH4_2g08710 |
| malus_domestica | MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1 |
| prunus_persica | Prupe.8G097900_v2.0.a1 |
| pyrus_communis | pycom05g05800 pycom10g06010 |
| rosa_chinensis | RchiOBHm_Chr6g0264151 |
| rosa_laevigata | RLG00000014286 RLG00000014287 |
| rosa_multiflora | Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006 |
| rosa_roxburghii | Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570 |
| rosa_rugosa | Rorug04G0194500 Rorug06G0007800 |
| rosa_samantha | Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200 |
| rosa_wichuraiana | Rw6G011200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 207 |
| Acc36I | ACCTGC | 1 cut(s) | 1321 |
| Acc65I | GGTACC | 1 cut(s) | 887 |
| AccB1I | GGYRCC | 2 cut(s) | 689, 887 |
| AccII | CGCG | 2 cut(s) | 43, 173 |
| AciI | CCGC | 7 cut(s) | 69, 74, 83, 86, 107, 171, 173 |
| AclWI | GGATC | 1 cut(s) | 144 |
| AcoI | YGGCCR | 2 cut(s) | 168, 174 |
| AcsI | RAATTY | 3 cut(s) | 299, 491, 1074 |
| AcuI | CTGAAG | 1 cut(s) | 326 |
| AcyI | GRCGYC | 2 cut(s) | 77, 204 |
| AdeI | CACNNNGTG | 1 cut(s) | 689 |
| AfaI | GTAC | 3 cut(s) | 889, 910, 1311 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 414, 429, 686, 770, 1180, 1198, 1319 |
| AflII | CTTAAG | 1 cut(s) | 1246 |
| AflIII | ACRYGT | 1 cut(s) | 463 |
| AgeI | ACCGGT | 1 cut(s) | 193 |
| AgsI | TTSAA | 6 cut(s) | 373, 382, 470, 636, 1079, 1394 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 822 |
| AjnI | CCWGG | 3 cut(s) | 580, 685, 1191 |
| AluBI | AGCT | 8 cut(s) | 13, 560, 647, 677, 782, 949, 955, 1229 |
| AluI | AGCT | 8 cut(s) | 13, 560, 647, 677, 782, 949, 955, 1229 |
| Alw21I | GWGCWC | 1 cut(s) | 957 |
| Alw26I | GTCTC | 2 cut(s) | 404, 1411 |
| AlwI | GGATC | 1 cut(s) | 144 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 25, 154 |
| AoxI | GGCC | 5 cut(s) | 104, 168, 174, 552, 1338 |
| ApeKI | GCWGC | 4 cut(s) | 656, 779, 1148, 1233 |
| ApoI | RAATTY | 3 cut(s) | 299, 491, 1074 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1373, 1405 |
| AscI | GGCGCGCC | 1 cut(s) | 41 |
| AseI | ATTAAT | 1 cut(s) | 798 |
| AsiGI | ACCGGT | 1 cut(s) | 193 |
| Asp718I | GGTACC | 1 cut(s) | 887 |
| AspLEI | GCGC | 3 cut(s) | 43, 45, 661 |
| AspS9I | GGNCC | 8 cut(s) | 104, 112, 191, 552, 620, 938, 1322, 1338 |
| AsuHPI | GGTGA | 4 cut(s) | 199, 271, 909, 1343 |
| AsuII | TTCGAA | 1 cut(s) | 1028 |
| AvaII | GGWCC | 5 cut(s) | 112, 191, 620, 938, 1322 |
| BaeGI | GKGCMC | 1 cut(s) | 694 |
| BanI | GGYRCC | 2 cut(s) | 689, 887 |
| BanII | GRGCYC | 2 cut(s) | 957, 1199 |
| BbsI | GAAGAC | 1 cut(s) | 857 |
| Bbv12I | GWGCWC | 1 cut(s) | 957 |
| BbvI | GCAGC | 4 cut(s) | 643, 791, 1135, 1220 |
| BccI | CCATC | 6 cut(s) | 478, 670, 721, 769, 1114, 1322 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 439, 473 |
| BciT130I | CCWGG | 3 cut(s) | 582, 687, 1193 |
| BcoDI | GTCTC | 2 cut(s) | 404, 1411 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BfmI | CTRYAG | 2 cut(s) | 819, 1206 |
| BfrI | CTTAAG | 1 cut(s) | 1246 |
| BfuAI | ACCTGC | 1 cut(s) | 1321 |
| Bme1390I | CCNGG | 3 cut(s) | 582, 687, 1193 |
| Bme18I | GGWCC | 5 cut(s) | 112, 191, 620, 938, 1322 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 822 |
| BmgT120I | GGNCC | 8 cut(s) | 104, 112, 191, 552, 620, 938, 1322, 1338 |
| BmiI | GGNNCC | 6 cut(s) | 114, 192, 621, 691, 889, 1203 |
| BmrFI | CCNGG | 3 cut(s) | 582, 687, 1193 |
| BmsI | GCATC | 5 cut(s) | 728, 888, 1043, 1246, 1277 |
| BpiI | GAAGAC | 1 cut(s) | 857 |
| BpmI | CTGGAG | 1 cut(s) | 203 |
| Bpu14I | TTCGAA | 1 cut(s) | 1028 |
| BpuEI | CTTGAG | 2 cut(s) | 548, 971 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1124 |
| BsaHI | GRCGYC | 2 cut(s) | 77, 204 |
| BsaJI | CCNNGG | 4 cut(s) | 171, 210, 408, 1192 |
| BsaWI | WCCGGW | 1 cut(s) | 193 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 414, 429, 686, 770, 1180, 1198, 1319 |
| Bse118I | RCCGGY | 1 cut(s) | 193 |
| Bse1I | ACTGG | 4 cut(s) | 623, 643, 880, 912 |
| Bse3DI | GCAATG | 1 cut(s) | 1193 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1124 |
| BseBI | CCWGG | 3 cut(s) | 582, 687, 1193 |
| BseDI | CCNNGG | 4 cut(s) | 171, 210, 408, 1192 |
| BseGI | GGATG | 3 cut(s) | 780, 1058, 1144 |
| BseJI | GATNNNNATC | 1 cut(s) | 1124 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 414, 429, 686, 770, 1180, 1198, 1319 |
| BseMI | GCAATG | 1 cut(s) | 1193 |
| BseMII | CTCAG | 4 cut(s) | 417, 758, 818, 1428 |
| BseNI | ACTGG | 4 cut(s) | 623, 643, 880, 912 |
| BsePI | GCGCGC | 1 cut(s) | 41 |
| BseRI | GAGGAG | 3 cut(s) | 20, 690, 699 |
| BseSI | GKGCMC | 1 cut(s) | 694 |
| BseX3I | CGGCCG | 2 cut(s) | 168, 174 |
| BseXI | GCAGC | 4 cut(s) | 643, 791, 1135, 1220 |
| BsgI | GTGCAG | 1 cut(s) | 666 |
| Bsh1236I | CGCG | 2 cut(s) | 43, 173 |
| Bsh1285I | CGRYCG | 3 cut(s) | 171, 177, 1387 |
| BshFI | GGCC | 5 cut(s) | 106, 170, 176, 554, 1340 |
| BshNI | GGYRCC | 2 cut(s) | 689, 887 |
| BshTI | ACCGGT | 1 cut(s) | 193 |
| BsiEI | CGRYCG | 3 cut(s) | 171, 177, 1387 |
| BsiHKAI | GWGCWC | 1 cut(s) | 957 |
| BsiSI | CCGG | 2 cut(s) | 194, 804 |
| BslFI | GGGAC | 1 cut(s) | 204 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 414, 429, 686, 770, 1180, 1198, 1319 |
| BsmAI | GTCTC | 2 cut(s) | 404, 1411 |
| BsmBI | CGTCTC | 1 cut(s) | 1411 |
| BsmFI | GGGAC | 1 cut(s) | 204 |
| BsnI | GGCC | 5 cut(s) | 106, 170, 176, 554, 1340 |
| Bsp119I | TTCGAA | 1 cut(s) | 1028 |
| Bsp1286I | GDGCHC | 3 cut(s) | 694, 957, 1199 |
| Bsp143I | GATC | 3 cut(s) | 136, 359, 1158 |
| BspACI | CCGC | 7 cut(s) | 69, 74, 83, 86, 107, 171, 173 |
| BspANI | GGCC | 5 cut(s) | 106, 170, 176, 554, 1340 |
| BspCNI | CTCAG | 4 cut(s) | 416, 757, 819, 1427 |
| BspFNI | CGCG | 2 cut(s) | 43, 173 |
| BspLI | GGNNCC | 6 cut(s) | 114, 192, 621, 691, 889, 1203 |
| BspMI | ACCTGC | 1 cut(s) | 1321 |
| BspPI | GGATC | 1 cut(s) | 144 |
| BspT104I | TTCGAA | 1 cut(s) | 1028 |
| BspT107I | GGYRCC | 2 cut(s) | 689, 887 |
| BspTI | CTTAAG | 1 cut(s) | 1246 |
| BsrDI | GCAATG | 1 cut(s) | 1193 |
| BsrFI | RCCGGY | 1 cut(s) | 193 |
| BsrI | ACTGG | 4 cut(s) | 623, 643, 880, 912 |
| BssAI | RCCGGY | 1 cut(s) | 193 |
| BssECI | CCNNGG | 4 cut(s) | 171, 210, 408, 1192 |
| BssHII | GCGCGC | 1 cut(s) | 41 |
| BssMI | GATC | 3 cut(s) | 136, 359, 1158 |
| BssNI | GRCGYC | 2 cut(s) | 77, 204 |
| BssT1I | CCWWGG | 2 cut(s) | 210, 408 |
| Bst2UI | CCWGG | 3 cut(s) | 582, 687, 1193 |
| Bst4CI | ACNGT | 7 cut(s) | 398, 1022, 1035, 1175, 1210, 1362, 1385 |
| Bst6I | CTCTTC | 1 cut(s) | 377 |
| BstACI | GRCGYC | 2 cut(s) | 77, 204 |
| BstAFI | CTTAAG | 1 cut(s) | 1246 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 689, 1351 |
| BstBI | TTCGAA | 1 cut(s) | 1028 |
| BstC8I | GCNNGC | 6 cut(s) | 43, 225, 452, 809, 1231, 1347 |
| BstDEI | CTNAG | 5 cut(s) | 403, 744, 827, 1284, 1414 |
| BstDSI | CCRYGG | 1 cut(s) | 171 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 684, 768 |
| BstF5I | GGATG | 3 cut(s) | 780, 1058, 1144 |
| BstFNI | CGCG | 2 cut(s) | 43, 173 |
| BstHHI | GCGC | 3 cut(s) | 43, 45, 661 |
| BstKTI | GATC | 3 cut(s) | 139, 362, 1161 |
| BstMAI | GTCTC | 2 cut(s) | 404, 1411 |
| BstMBI | GATC | 3 cut(s) | 136, 359, 1158 |
| BstMCI | CGRYCG | 3 cut(s) | 171, 177, 1387 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 80, 83, 293, 419, 653, 689, 1265, 1346, 1351 |
| BstNI | CCWGG | 3 cut(s) | 582, 687, 1193 |
| BstNSI | RCATGY | 3 cut(s) | 454, 467, 1349 |
| BstSCI | CCNGG | 3 cut(s) | 580, 685, 1191 |
| BstSFI | CTRYAG | 2 cut(s) | 819, 1206 |
| BstSLI | GKGCMC | 1 cut(s) | 694 |
| BstUI | CGCG | 2 cut(s) | 43, 173 |
| BstV1I | GCAGC | 4 cut(s) | 643, 791, 1135, 1220 |
| BstV2I | GAAGAC | 1 cut(s) | 857 |
| BstX2I | RGATCY | 1 cut(s) | 136 |
| BstYI | RGATCY | 1 cut(s) | 136 |
| BstZI | CGGCCG | 2 cut(s) | 168, 174 |
| BsuRI | GGCC | 5 cut(s) | 106, 170, 176, 554, 1340 |
| BtgI | CCRYGG | 1 cut(s) | 171 |
| BtsCI | GGATG | 3 cut(s) | 780, 1058, 1144 |
| BtsIMutI | CAGTG | 3 cut(s) | 341, 658, 1221 |
| BveI | ACCTGC | 1 cut(s) | 1321 |
| Cac8I | GCNNGC | 6 cut(s) | 43, 225, 452, 809, 1231, 1347 |
| CaiI | CAGNNNCTG | 2 cut(s) | 25, 154 |
| CfoI | GCGC | 3 cut(s) | 43, 45, 661 |
| Cfr10I | RCCGGY | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 8 cut(s) | 104, 112, 191, 552, 620, 938, 1322, 1338 |
| Cfr42I | CCGCGG | 1 cut(s) | 174 |
| CseI | GACGC | 1 cut(s) | 66 |
| CsiI | ACCWGGT | 1 cut(s) | 685 |
| Csp6I | GTAC | 3 cut(s) | 888, 909, 1310 |
| CspAI | ACCGGT | 1 cut(s) | 193 |
| CviAII | CATG | 5 cut(s) | 317, 451, 464, 1346, 1370 |
| CviQI | GTAC | 3 cut(s) | 888, 909, 1310 |
| DdeI | CTNAG | 5 cut(s) | 403, 744, 827, 1284, 1414 |
| DpnI | GATC | 3 cut(s) | 138, 361, 1160 |
| DpnII | GATC | 3 cut(s) | 136, 359, 1158 |
| DraIII | CACNNNGTG | 1 cut(s) | 689 |
| DriI | GACNNNNNGTC | 1 cut(s) | 822 |
| EaeI | YGGCCR | 2 cut(s) | 168, 174 |
| EagI | CGGCCG | 2 cut(s) | 168, 174 |
| Eam1104I | CTCTTC | 1 cut(s) | 377 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 822 |
| EarI | CTCTTC | 1 cut(s) | 377 |
| Ecl136II | GAGCTC | 1 cut(s) | 955 |
| EclXI | CGGCCG | 2 cut(s) | 168, 174 |
| Eco130I | CCWWGG | 2 cut(s) | 210, 408 |
| Eco24I | GRGCYC | 2 cut(s) | 957, 1199 |
| Eco47I | GGWCC | 5 cut(s) | 112, 191, 620, 938, 1322 |
| Eco52I | CGGCCG | 2 cut(s) | 168, 174 |
| Eco53kI | GAGCTC | 1 cut(s) | 955 |
| Eco57I | CTGAAG | 1 cut(s) | 326 |
| EcoICRI | GAGCTC | 1 cut(s) | 955 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 684, 768 |
| EcoRII | CCWGG | 3 cut(s) | 580, 685, 1191 |
| EcoT14I | CCWWGG | 2 cut(s) | 210, 408 |
| EcoT38I | GRGCYC | 2 cut(s) | 957, 1199 |
| ErhI | CCWWGG | 2 cut(s) | 210, 408 |
| Esp3I | CGTCTC | 1 cut(s) | 1411 |
| FaeI | CATG | 5 cut(s) | 320, 454, 467, 1349, 1373 |
| FaqI | GGGAC | 1 cut(s) | 204 |
| FatI | CATG | 5 cut(s) | 316, 450, 463, 1345, 1369 |
| FokI | GGATG | 3 cut(s) | 787, 1065, 1151 |
| FriOI | GRGCYC | 2 cut(s) | 957, 1199 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GlaI | GCGC | 3 cut(s) | 42, 44, 660 |
| GsuI | CTGGAG | 1 cut(s) | 203 |
| HaeIII | GGCC | 5 cut(s) | 106, 170, 176, 554, 1340 |
| HapII | CCGG | 2 cut(s) | 194, 804 |
| HgaI | GACGC | 1 cut(s) | 66 |
| HhaI | GCGC | 3 cut(s) | 43, 45, 661 |
| Hin1I | GRCGYC | 2 cut(s) | 77, 204 |
| Hin1II | CATG | 5 cut(s) | 320, 454, 467, 1349, 1373 |
| Hin6I | GCGC | 3 cut(s) | 41, 43, 659 |
| HinP1I | GCGC | 3 cut(s) | 41, 43, 659 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HindIII | AAGCTT | 2 cut(s) | 11, 947 |
| HpaII | CCGG | 2 cut(s) | 194, 804 |
| HphI | GGTGA | 4 cut(s) | 199, 271, 909, 1343 |
| Hpy166II | GTNNAC | 4 cut(s) | 394, 917, 1090, 1219 |
| Hpy188I | TCNGA | 7 cut(s) | 141, 240, 306, 364, 736, 828, 990 |
| Hpy188III | TCNNGA | 1 cut(s) | 1320 |
| Hpy8I | GTNNAC | 4 cut(s) | 394, 917, 1090, 1219 |
| Hpy99I | CGWCG | 3 cut(s) | 101, 104, 121 |
| HpyAV | CCTTC | 4 cut(s) | 235, 344, 764, 930 |
| HpyCH4III | ACNGT | 7 cut(s) | 398, 1022, 1035, 1175, 1210, 1362, 1385 |
| HpyCH4IV | ACGT | 1 cut(s) | 204 |
| HpyCH4V | TGCA | 9 cut(s) | 287, 316, 341, 683, 1056, 1072, 1113, 1170, 1186 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 80, 83, 293, 419, 653, 689, 1265, 1346, 1351 |
| HpyF3I | CTNAG | 5 cut(s) | 403, 744, 827, 1284, 1414 |
| HpySE526I | ACGT | 1 cut(s) | 204 |
| Hsp92I | GRCGYC | 2 cut(s) | 77, 204 |
| Hsp92II | CATG | 5 cut(s) | 320, 454, 467, 1349, 1373 |
| HspAI | GCGC | 3 cut(s) | 41, 43, 659 |
| KpnI | GGTACC | 1 cut(s) | 891 |
| KspI | CCGCGG | 1 cut(s) | 174 |
| Kzo9I | GATC | 3 cut(s) | 136, 359, 1158 |
| LmnI | GCTCC | 4 cut(s) | 682, 703, 960, 1207 |
| Lsp1109I | GCAGC | 4 cut(s) | 643, 791, 1135, 1220 |
| LweI | GCATC | 5 cut(s) | 728, 888, 1043, 1246, 1277 |
| MabI | ACCWGGT | 1 cut(s) | 685 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MaeII | ACGT | 1 cut(s) | 204 |
| MaeIII | GTNAC | 4 cut(s) | 205, 814, 835, 1016 |
| MalI | GATC | 3 cut(s) | 138, 361, 1160 |
| MboI | GATC | 3 cut(s) | 136, 359, 1158 |
| MboII | GAAGA | 5 cut(s) | 193, 394, 482, 862, 1129 |
| MfeI | CAATTG | 1 cut(s) | 1101 |
| MflI | RGATCY | 1 cut(s) | 136 |
| MhlI | GDGCHC | 3 cut(s) | 694, 957, 1199 |
| MluCI | AATT | 7 cut(s) | 299, 491, 799, 1074, 1101, 1165, 1238 |
| MlyI | GAGTC | 2 cut(s) | 59, 1055 |
| MseI | TTAA | 5 cut(s) | 587, 600, 798, 1247, 1377 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1118 |
| MspA1I | CMGCKG | 4 cut(s) | 109, 173, 782, 1229 |
| MspCI | CTTAAG | 1 cut(s) | 1246 |
| MspI | CCGG | 2 cut(s) | 194, 804 |
| MspR9I | CCNGG | 3 cut(s) | 582, 687, 1193 |
| MunI | CAATTG | 1 cut(s) | 1101 |
| MvaI | CCWGG | 3 cut(s) | 582, 687, 1193 |
| MvnI | CGCG | 2 cut(s) | 43, 173 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 80, 83, 293, 419, 653, 689, 1265, 1346, 1351 |
| NdeII | GATC | 3 cut(s) | 136, 359, 1158 |
| NlaIII | CATG | 5 cut(s) | 320, 454, 467, 1349, 1373 |
| NlaIV | GGNNCC | 6 cut(s) | 114, 192, 621, 691, 889, 1203 |
| NmeAIII | GCCGAG | 3 cut(s) | 202, 1178, 1366 |
| NmuCI | GTSAC | 3 cut(s) | 205, 814, 1016 |
| NspI | RCATGY | 3 cut(s) | 454, 467, 1349 |
| NspV | TTCGAA | 1 cut(s) | 1028 |
| PaeI | GCATGC | 2 cut(s) | 454, 1349 |
| PalAI | GGCGCGCC | 1 cut(s) | 41 |
| PauI | GCGCGC | 1 cut(s) | 41 |
| PciI | ACATGT | 1 cut(s) | 463 |
| PfeI | GAWTC | 8 cut(s) | 29, 142, 253, 508, 859, 985, 1025, 1125 |
| PinAI | ACCGGT | 1 cut(s) | 193 |
| PleI | GAGTC | 2 cut(s) | 58, 1055 |
| PpsI | GAGTC | 2 cut(s) | 58, 1055 |
| PscI | ACATGT | 1 cut(s) | 463 |
| PshBI | ATTAAT | 1 cut(s) | 798 |
| Psp124BI | GAGCTC | 1 cut(s) | 957 |
| Psp6I | CCWGG | 3 cut(s) | 580, 685, 1191 |
| PspGI | CCWGG | 3 cut(s) | 580, 685, 1191 |
| PspN4I | GGNNCC | 6 cut(s) | 114, 192, 621, 691, 889, 1203 |
| PspPI | GGNCC | 8 cut(s) | 104, 112, 191, 552, 620, 938, 1322, 1338 |
| PstNI | CAGNNNCTG | 2 cut(s) | 25, 154 |
| PsuI | RGATCY | 1 cut(s) | 136 |
| PteI | GCGCGC | 1 cut(s) | 41 |
| PvuII | CAGCTG | 2 cut(s) | 782, 1229 |
| RsaI | GTAC | 3 cut(s) | 889, 910, 1311 |
| RsaNI | GTAC | 3 cut(s) | 888, 909, 1310 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1118 |
| SacI | GAGCTC | 1 cut(s) | 957 |
| SacII | CCGCGG | 1 cut(s) | 174 |
| SaqAI | TTAA | 5 cut(s) | 587, 600, 798, 1247, 1377 |
| Sau3AI | GATC | 3 cut(s) | 136, 359, 1158 |
| Sau96I | GGNCC | 8 cut(s) | 104, 112, 191, 552, 620, 938, 1322, 1338 |
| SchI | GAGTC | 2 cut(s) | 59, 1055 |
| ScrFI | CCNGG | 3 cut(s) | 582, 687, 1193 |
| SduI | GDGCHC | 3 cut(s) | 694, 957, 1199 |
| SexAI | ACCWGGT | 1 cut(s) | 685 |
| SfaNI | GCATC | 5 cut(s) | 728, 888, 1043, 1246, 1277 |
| SfcI | CTRYAG | 2 cut(s) | 819, 1206 |
| Sfr303I | CCGCGG | 1 cut(s) | 174 |
| SfuI | TTCGAA | 1 cut(s) | 1028 |
| SgrBI | CCGCGG | 1 cut(s) | 174 |
| SgsI | GGCGCGCC | 1 cut(s) | 41 |
| SinI | GGWCC | 5 cut(s) | 112, 191, 620, 938, 1322 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1118 |
| SmlI | CTYRAG | 3 cut(s) | 563, 950, 1246 |
| SmoI | CTYRAG | 3 cut(s) | 563, 950, 1246 |
| SphI | GCATGC | 2 cut(s) | 454, 1349 |
| Sse9I | AATT | 7 cut(s) | 299, 491, 799, 1074, 1101, 1165, 1238 |
| SsiI | CCGC | 7 cut(s) | 69, 74, 83, 86, 107, 171, 173 |
| SspMI | CTAG | 1 cut(s) | 47 |
| SstI | GAGCTC | 1 cut(s) | 957 |
| StyD4I | CCNGG | 3 cut(s) | 580, 685, 1191 |
| StyI | CCWWGG | 2 cut(s) | 210, 408 |
| TaaI | ACNGT | 7 cut(s) | 398, 1022, 1035, 1175, 1210, 1362, 1385 |
| TaiI | ACGT | 1 cut(s) | 207 |
| TaqI | TCGA | 2 cut(s) | 119, 1028 |
| TasI | AATT | 7 cut(s) | 299, 491, 799, 1074, 1101, 1165, 1238 |
| TauI | GCSGC | 6 cut(s) | 77, 86, 89, 109, 173, 176 |
| TfiI | GAWTC | 8 cut(s) | 29, 142, 253, 508, 859, 985, 1025, 1125 |
| Tru1I | TTAA | 5 cut(s) | 587, 600, 798, 1247, 1377 |
| Tru9I | TTAA | 5 cut(s) | 587, 600, 798, 1247, 1377 |
| TscAI | CASTG | 3 cut(s) | 348, 658, 1221 |
| TseFI | GTSAC | 3 cut(s) | 205, 814, 1016 |
| TseI | GCWGC | 4 cut(s) | 656, 779, 1148, 1233 |
| Tsp45I | GTSAC | 3 cut(s) | 205, 814, 1016 |
| TspDTI | ATGAA | 3 cut(s) | 741, 863, 1358 |
| TspGWI | ACGGA | 1 cut(s) | 1151 |
| TspRI | CASTG | 3 cut(s) | 348, 658, 1221 |
| Vha464I | CTTAAG | 1 cut(s) | 1246 |
| VpaK11BI | GGWCC | 5 cut(s) | 112, 191, 620, 938, 1322 |
| VspI | ATTAAT | 1 cut(s) | 798 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 684, 768 |
| XapI | RAATTY | 3 cut(s) | 299, 491, 1074 |
| XceI | RCATGY | 3 cut(s) | 454, 467, 1349 |
| XspI | CTAG | 1 cut(s) | 47 |
| ZraI | GACGTC | 1 cut(s) | 205 |