Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007202

Physical Location & Seq

Genomic Coordinates Forward (+)

1180070 .. 1180971

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0007800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAGATGTGATGGAAGGTCTTGCTACGGCGTTGACATGCTTGGATTCAACCCTGGTTTCGTTGGGGGAGGCAGGGGCTGCTGCTTTTCAAGATGGCAATTGGTATATGGTAGGGCGGTTGTTGGCACCAAAAGCAGCGTTGCCGGGATTCAAAGGCACCATCTGGCATATCAGGGCAGGGCTCACTATTCAGGATGCAGAAGATCGCTTTGTTTTCCAGTTTGAGAGTGAGGCTATACGCAATCGAATTTTGCATGGGGGACCCTGGTTCTATCGAAACACCATGTTGGTGGCAGGAGAGTATGATGGCCTCAGTCCGGTGGAAGAGGTGCCTCTGAACATGATGGAAACCTGGGTCACGGTTAAGGGACTACCTTTTGCGCTGAGAAACAAGACGGTGTTGTCCATGGTGGGATCATCGCTCGGAAGGAGAATCAAGATAGCCTTCGATGTCTGTCGCCGGATTCGTGTCTGGAAGGTTTTTGAATTCTCTCCAGTTGTGAAACCGGAGCTCACTTTTATCTATGAGAAGGTCAAGGGCTTTTGTCGTGACTGCGGGCTTTTTGTTCATGATGCCCTAGGTTGTGATAAGCTGCTGATTAAGGAGAAGGAGGAAATTCAGGCTAAACCACCGGCAGCGGCGTTGGCTGGCTTGTCCTTGACTTCGGGGGTAGATGTTAGCCCTAATCCCATGGATGTTTCTAGTATGGGGTTGGGGATGGAGACCGTGGTTGATCGGAATTGTAATGTCCTGGTTACACTCGAGCAGGCGTCGGGTTTCTCTGCTACTACTGCTAGTAGCCCTGTCGTGGCGTCAACTCAAGGGGAGTTGAGCTCCAAGAGCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007163 GO:0007165 GO:0008092 GO:0008150 GO:0008154 GO:0008179 GO:0009653 GO:0009826 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0019899 GO:0023052 GO:0030029 GO:0030036 GO:0030863 GO:0030864 GO:0031279 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045761 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051339 GO:0051716 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0097435 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_C CAP_N

Protein Analysis

284

Amino Acids

30.87

Weight (kDa)

6.34

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	55 - 98	2.1e-06	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34490 AT4G34490
fragaria_vesca	FvH4_2g08710 FvH4_2g08710
malus_domestica	MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1
prunus_persica	Prupe.8G097900_v2.0.a1
pyrus_communis	pycom05g05800 pycom10g06010
rosa_chinensis	RchiOBHm_Chr6g0264151
rosa_laevigata	RLG00000014286 RLG00000014287
rosa_multiflora	Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570
rosa_rugosa	Rorug04G0194500 Rorug06G0007800
rosa_samantha	Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200
rosa_wichuraiana	Rw6G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AccB1I	GGYRCC	3 cut(s)	127, 158, 331
AciI	CCGC	3 cut(s)	118, 558, 641
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	3 cut(s)	249, 488, 618
AcyI	GRCGYC	2 cut(s)	773, 815
AfiI	CCNNNNNNNGG	2 cut(s)	319, 811
AgsI	TTSAA	4 cut(s)	51, 92, 154, 488
AjnI	CCWGG	4 cut(s)	54, 266, 353, 753
AluBI	AGCT	3 cut(s)	514, 595, 837
AluI	AGCT	3 cut(s)	514, 595, 837
Alw21I	GWGCWC	2 cut(s)	516, 839
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	5 cut(s)	80, 83, 137, 595, 638
ApoI	RAATTY	3 cut(s)	249, 488, 618
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	263
AvrII	CCTAGG	1 cut(s)	580
BanI	GGYRCC	3 cut(s)	127, 158, 331
BanII	GRGCYC	3 cut(s)	186, 516, 839
Bbv12I	GWGCWC	2 cut(s)	516, 839
BbvI	GCAGC	5 cut(s)	67, 70, 149, 582, 650
BccI	CCATC	6 cut(s)	7, 89, 170, 302, 340, 715
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	4 cut(s)	56, 268, 355, 755
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	3 cut(s)	581, 705, 798
BisI	GCNGC	6 cut(s)	81, 84, 138, 596, 639, 642
BlnI	CCTAGG	1 cut(s)	580
BlsI	GCNGC	6 cut(s)	82, 85, 139, 597, 640, 643
Bme1390I	CCNGG	5 cut(s)	56, 147, 268, 355, 755
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	5 cut(s)	129, 160, 264, 265, 333
BmrFI	CCNGG	5 cut(s)	56, 147, 268, 355, 755
BmsI	GCATC	2 cut(s)	187, 565
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	147
BsaHI	GRCGYC	2 cut(s)	773, 815
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	7 cut(s)	54, 266, 354, 408, 580, 693, 729
BsaWI	WCCGGW	2 cut(s)	319, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 811
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	220, 497
BseBI	CCWGG	4 cut(s)	56, 268, 355, 755
BseDI	CCNNGG	7 cut(s)	54, 266, 354, 408, 580, 693, 729
BseGI	GGATG	3 cut(s)	202, 703, 726
BseLI	CCNNNNNNNGG	2 cut(s)	319, 811
BseMII	CTCAG	2 cut(s)	328, 377
BseNI	ACTGG	2 cut(s)	220, 497
BseXI	GCAGC	5 cut(s)	67, 70, 149, 582, 650
BshFI	GGCC	1 cut(s)	312
BshNI	GGYRCC	3 cut(s)	127, 158, 331
BsiHKAI	GWGCWC	2 cut(s)	516, 839
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	5 cut(s)	146, 320, 463, 509, 635
BslFI	GGGAC	2 cut(s)	276, 384
BslI	CCNNNNNNNGG	2 cut(s)	319, 811
BsmAI	GTCTC	1 cut(s)	719
BsmFI	GGGAC	2 cut(s)	276, 384
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	719
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	3 cut(s)	186, 516, 839
Bsp143I	GATC	3 cut(s)	205, 416, 736
Bsp19I	CCATGG	2 cut(s)	408, 693
BspACI	CCGC	3 cut(s)	118, 558, 641
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	327, 378
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	5 cut(s)	129, 160, 264, 265, 333
BspPI	GGATC	1 cut(s)	424
BspT107I	GGYRCC	3 cut(s)	127, 158, 331
BspTNI	GGTCTC	1 cut(s)	719
BsrFI	RCCGGY	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	220, 497
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	7 cut(s)	54, 266, 354, 408, 580, 693, 729
BssMI	GATC	3 cut(s)	205, 416, 736
BssNI	GRCGYC	2 cut(s)	773, 815
BssT1I	CCWWGG	3 cut(s)	408, 580, 693
Bst2UI	CCWGG	4 cut(s)	56, 268, 355, 755
Bst4CI	ACNGT	3 cut(s)	364, 400, 730
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	2 cut(s)	773, 815
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	560, 652, 771
BstDEI	CTNAG	2 cut(s)	314, 386
BstDSI	CCRYGG	3 cut(s)	408, 693, 729
BstF5I	GGATG	3 cut(s)	202, 703, 726
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	208, 419, 739
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	3 cut(s)	205, 416, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 134, 647, 794, 843
BstNI	CCWGG	4 cut(s)	56, 268, 355, 755
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	5 cut(s)	54, 145, 266, 353, 753
BstV1I	GCAGC	5 cut(s)	67, 70, 149, 582, 650
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	312
BtgI	CCRYGG	3 cut(s)	408, 693, 729
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	202, 703, 726
Cac8I	GCNNGC	3 cut(s)	560, 652, 771
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	2 cut(s)	762, 804
CviAII	CATG	7 cut(s)	39, 257, 286, 343, 409, 572, 694
DdeI	CTNAG	2 cut(s)	314, 386
DpnI	GATC	3 cut(s)	207, 418, 738
DpnII	GATC	3 cut(s)	205, 416, 736
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	2 cut(s)	514, 837
Eco130I	CCWWGG	3 cut(s)	408, 580, 693
Eco24I	GRGCYC	3 cut(s)	186, 516, 839
Eco31I	GGTCTC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	2 cut(s)	514, 837
Eco88I	CYCGRG	1 cut(s)	764
EcoICRI	GAGCTC	2 cut(s)	514, 837
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	4 cut(s)	54, 266, 353, 753
EcoT14I	CCWWGG	3 cut(s)	408, 580, 693
EcoT38I	GRGCYC	3 cut(s)	186, 516, 839
ErhI	CCWWGG	3 cut(s)	408, 580, 693
FaeI	CATG	7 cut(s)	42, 260, 289, 346, 412, 575, 697
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	2 cut(s)	276, 384
FatI	CATG	7 cut(s)	38, 256, 285, 342, 408, 571, 693
FauI	CCCGC	1 cut(s)	551
Fnu4HI	GCNGC	6 cut(s)	81, 84, 138, 596, 639, 642
FokI	GGATG	3 cut(s)	209, 710, 733
FriOI	GRGCYC	3 cut(s)	186, 516, 839
Fsp4HI	GCNGC	6 cut(s)	81, 84, 138, 596, 639, 642
FspBI	CTAG	3 cut(s)	581, 705, 798
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	6 cut(s)	81, 84, 138, 596, 639, 642
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	5 cut(s)	146, 320, 463, 509, 635
HgaI	GACGC	2 cut(s)	762, 804
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	2 cut(s)	773, 815
Hin1II	CATG	7 cut(s)	42, 260, 289, 346, 412, 575, 697
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	2 cut(s)	36, 819
HindII	GTYRAC	2 cut(s)	36, 819
HinfI	GANTC	4 cut(s)	47, 150, 435, 466
HpaII	CCGG	5 cut(s)	146, 320, 463, 509, 635
Hpy166II	GTNNAC	2 cut(s)	36, 819
Hpy188I	TCNGA	3 cut(s)	339, 428, 741
Hpy188III	TCNNGA	6 cut(s)	92, 194, 439, 475, 551, 572
Hpy8I	GTNNAC	2 cut(s)	36, 819
Hpy99I	CGWCG	1 cut(s)	778
HpyAV	CCTTC	6 cut(s)	11, 423, 457, 472, 526, 604
HpyCH4III	ACNGT	3 cut(s)	364, 400, 730
HpyCH4V	TGCA	2 cut(s)	200, 256
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 134, 647, 794, 843
HpyF3I	CTNAG	2 cut(s)	314, 386
Hsp92I	GRCGYC	2 cut(s)	773, 815
Hsp92II	CATG	7 cut(s)	42, 260, 289, 346, 412, 575, 697
HspAI	GCGC	1 cut(s)	383
KflI	GGGWCCC	1 cut(s)	263
Kzo9I	GATC	3 cut(s)	205, 416, 736
LmnI	GCTCC	2 cut(s)	511, 842
Lsp1109I	GCAGC	5 cut(s)	67, 70, 149, 582, 650
LweI	GCATC	2 cut(s)	187, 565
MaeI	CTAG	3 cut(s)	581, 705, 798
MaeIII	GTNAC	3 cut(s)	358, 551, 757
MalI	GATC	3 cut(s)	207, 418, 738
MboI	GATC	3 cut(s)	205, 416, 736
MboII	GAAGA	2 cut(s)	215, 338
MfeI	CAATTG	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	186, 516, 839
MluCI	AATT	5 cut(s)	100, 249, 488, 618, 742
MnlI	CCTC	6 cut(s)	64, 226, 322, 323, 345, 607
MseI	TTAA	2 cut(s)	366, 603
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	5 cut(s)	146, 320, 463, 509, 635
MspR9I	CCNGG	5 cut(s)	56, 147, 268, 355, 755
MunI	CAATTG	1 cut(s)	100
MvaI	CCWGG	4 cut(s)	56, 268, 355, 755
MwoI	GCNNNNNNNGC	5 cut(s)	80, 134, 647, 794, 843
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	2 cut(s)	408, 693
NdeII	GATC	3 cut(s)	205, 416, 736
NlaIII	CATG	7 cut(s)	42, 260, 289, 346, 412, 575, 697
NlaIV	GGNNCC	5 cut(s)	129, 160, 264, 265, 333
NmuCI	GTSAC	2 cut(s)	358, 551
NspI	RCATGY	1 cut(s)	42
PaeR7I	CTCGAG	1 cut(s)	764
PagI	TCATGA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	466
PfeI	GAWTC	4 cut(s)	47, 150, 435, 466
PkrI	GCNGC	6 cut(s)	82, 85, 139, 597, 640, 643
PpuMI	RGGWCCY	1 cut(s)	263
Psp124BI	GAGCTC	2 cut(s)	516, 839
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	4 cut(s)	54, 266, 353, 753
PspGI	CCWGG	4 cut(s)	54, 266, 353, 753
PspN4I	GGNNCC	5 cut(s)	129, 160, 264, 265, 333
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PspXI	VCTCGAGB	1 cut(s)	764
PstNI	CAGNNNCTG	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	290
SacI	GAGCTC	2 cut(s)	516, 839
SaqAI	TTAA	2 cut(s)	366, 603
SatI	GCNGC	6 cut(s)	81, 84, 138, 596, 639, 642
Sau3AI	GATC	3 cut(s)	205, 416, 736
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	5 cut(s)	56, 147, 268, 355, 755
SduI	GDGCHC	3 cut(s)	186, 516, 839
SfaNI	GCATC	2 cut(s)	187, 565
Sfr274I	CTCGAG	1 cut(s)	764
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	764, 822
SmoI	CTYRAG	2 cut(s)	764, 822
Sse9I	AATT	5 cut(s)	100, 249, 488, 618, 742
SsiI	CCGC	3 cut(s)	118, 558, 641
SspMI	CTAG	3 cut(s)	581, 705, 798
SstI	GAGCTC	2 cut(s)	516, 839
StyD4I	CCNGG	5 cut(s)	54, 145, 266, 353, 753
StyI	CCWWGG	3 cut(s)	408, 580, 693
TaaI	ACNGT	3 cut(s)	364, 400, 730
TaqI	TCGA	4 cut(s)	247, 277, 450, 765
TasI	AATT	5 cut(s)	100, 249, 488, 618, 742
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	4 cut(s)	47, 150, 435, 466
Tru1I	TTAA	2 cut(s)	366, 603
Tru9I	TTAA	2 cut(s)	366, 603
TseFI	GTSAC	2 cut(s)	358, 551
TseI	GCWGC	5 cut(s)	80, 83, 137, 595, 638
Tsp45I	GTSAC	2 cut(s)	358, 551
TspDTI	ATGAA	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	3 cut(s)	249, 488, 618
XceI	RCATGY	1 cut(s)	42
XhoI	CTCGAG	1 cut(s)	764
XmaJI	CCTAGG	1 cut(s)	580
XspI	CTAG	3 cut(s)	581, 705, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.