RchiOBHm_Chr6g0264151

Belongs to the CAP family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
19236715 .. 19241398
4684 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23690

Sequence Viewer

Length: 1428 bp
ATGGAGGAGAAGCTGATACAGAGGCTTGAATCGGCGGTGACGCGCCTGGAGGCGCTGTCGATGTCCGGGGGCTCTGCCGCGGCGGCGGCGAGTGGGGACGACGCGCCGCTGGATCCGTCGGTTTTGGCGTTCGAGGATCTGATTGGGCAGTACGTGGGAAGGGTTTCTGCCGCGGCGGAGAAGATTGGGGGACAGGTGTTGGATATCACCAAGATTGTGGCGGAGGCTTTTGCTGCCCAGAAGGACCTGATTATCAAGGTCAAGCAACACAAGAAACCTGACAATGCAGGGTTGGCTGAATTTCTGAAGCCACTCAACGAGGTCATTACAAAGGCAAATAAATTGACAGAAGGAAGGCGATCTGATTTTTTCAATCACTTGAAGAGTGCTGCTGACAGTCTCTCAGCTTTAGCATGGATTGCCTATACAGGGAAAGAATGTGGTATGAGCATGCCTATTGCACATGTCGAAGAAAGTTGGCAGATGGCTGAATTTTACAACAACAAGATTCTTGTCGAGTATAAGACCAAAGACCCAAATCATGTAGAGTGGGCCAAAGCTATGAAGGAACTATATATGCCTGGTTTGAGAGAATATGTTAAGAGTTTCTATCCGTTGGGTCCAGTCTGGAGTCCAACCGGCACAGCTGTTACTGCTGCTCCATCAAAACCAAAAGCTCCGGCACCAGGTGCACCTGCTCCTCCACCTCCTCCATCGGCTTCACTCTTCAGTTCTGAAACTTCTAAGGCTTCGTCATCACGCCCGAAAGAAGGGATGGCAGCTGTTTTCCAAGAGATCAATTCTGGCAAGCCTGTGACTACAGGTCTGAGAAAGGTCACAGATGATATGAAGACAAAGAATCGTGCTGACAGAACTGGGGTTGTTGGTACCCAGGAGAAAGAAAGTCGTACTAGTGCACCTGCTGTTTCTAAAGTAGGACCTCCGAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGCTGTTGAGAATCAGATTGGAAAGAAGGATTTGGTGATTAGTGAATGTGATCCAAAACAGTCAGTATATATTTTTGGATGCAAAGACTCTGTTTTGCAAATTCAAGGGAAAGTGAACAACATTACAATTGACAAATGCACTAAGATGGGAGTTGTATTTCAGGATGTTGTGGCTGCTTTTGAGATCGTCAATTGCAACCGTGTTGAGGTGCAATGTCAGGGCTCTGCCCCAACAGTTTCAATTGACAACACAGCTGGCTGCCAATTTTATTTAAGCAAGGATGCTCTATCTGCATCTATAACAACGGCTAAATCAAGTGAAGTGAATATAATGGTACCTGGTGCTGAACCTGATGGCGATTGGGGTGAGCACGCATTGCCAGAACAGTTTATTCATGTGTATAAGGATGGTCGCTTTGAAACAACTCCAGTCTCTCACTCAGCAGGAGGGTAA

Protein Analysis

475

Amino Acids

51.13

Weight (kDa)

6.69

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP_N-CM PF01213 3 - 36 9.7e-08 CAP N-terminal conserved motif
CAP_N PF21938 44 - 205 2.7e-35 CAP, N-terminal domain
CAP_C PF08603 314 - 471 8.9e-62 Adenylate cyclase associated (CAP) C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 703, 928
Acc36I ACCTGC 2 cut(s) 703, 928
Acc65I GGTACC 2 cut(s) 887, 1309
AccB1I GGYRCC 3 cut(s) 682, 887, 1309
AccII CGCG 4 cut(s) 43, 80, 104, 173
AclWI GGATC 4 cut(s) 107, 120, 144, 1019
AcsI RAATTY 3 cut(s) 299, 491, 1074
AcuI CTGAAG 2 cut(s) 326, 712
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 4 cut(s) 152, 889, 910, 1311
AfiI CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 7 cut(s) 29, 373, 382, 959, 1079, 1215, 1394
AhdI GACNNNNNGTC 1 cut(s) 822
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 5 cut(s) 45, 580, 685, 891, 1312
AluBI AGCT 8 cut(s) 13, 407, 560, 647, 677, 782, 955, 1229
AluI AGCT 8 cut(s) 13, 407, 560, 647, 677, 782, 955, 1229
Alw21I GWGCWC 3 cut(s) 694, 919, 1347
Alw26I GTCTC 2 cut(s) 404, 1411
Alw44I GTGCAC 2 cut(s) 690, 915
AlwI GGATC 4 cut(s) 107, 120, 144, 1019
AoxI GGCC 1 cut(s) 552
ApaLI GTGCAC 2 cut(s) 690, 915
ApeKI GCWGC 6 cut(s) 233, 389, 656, 779, 1148, 1233
ApoI RAATTY 3 cut(s) 299, 491, 1074
Asp700I GAANNNNTTC 1 cut(s) 163
Asp718I GGTACC 2 cut(s) 887, 1309
AspLEI GCGC 3 cut(s) 45, 55, 106
AspS9I GGNCC 4 cut(s) 244, 552, 620, 938
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 4 cut(s) 49, 199, 1021, 1352
AvaII GGWCC 3 cut(s) 244, 620, 938
BaeGI GKGCMC 2 cut(s) 694, 919
BamHI GGATCC 1 cut(s) 112
BanI GGYRCC 3 cut(s) 682, 887, 1309
BanII GRGCYC 2 cut(s) 74, 1199
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 3 cut(s) 694, 919, 1347
BbvI GCAGC 6 cut(s) 220, 376, 643, 791, 1135, 1220
BccI CCATC 7 cut(s) 478, 670, 721, 769, 1114, 1322, 1376
BceAI ACGGC 1 cut(s) 1296
BciT130I CCWGG 5 cut(s) 47, 582, 687, 893, 1314
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 404, 1411
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 1 cut(s) 912
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 2 cut(s) 703, 928
BglI GCCNNNNNGGC 1 cut(s) 83
Bme1390I CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
Bme18I GGWCC 3 cut(s) 244, 620, 938
BmeRI GACNNNNNGTC 1 cut(s) 822
BmgT120I GGNCC 4 cut(s) 244, 552, 620, 938
BmiI GGNNCC 5 cut(s) 114, 621, 684, 889, 1311
BmrFI CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
BmrI ACTGGG 1 cut(s) 885
BmsI GCATC 3 cut(s) 1043, 1246, 1277
BmuI ACTGGG 1 cut(s) 885
BpiI GAAGAC 1 cut(s) 857
BpmI CTGGAG 3 cut(s) 68, 649, 1386
BpuMI CCSGG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 4 cut(s) 66, 78, 171, 891
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 643, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 3 cut(s) 623, 880, 1403
Bse3DI GCAATG 2 cut(s) 1193, 1349
BseBI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
BseDI CCNNGG 4 cut(s) 66, 78, 171, 891
BseGI GGATG 5 cut(s) 780, 1058, 1144, 1261, 1387
BseLI CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
BseMI GCAATG 2 cut(s) 1193, 1349
BseMII CTCAG 3 cut(s) 417, 818, 1428
BseNI ACTGG 3 cut(s) 623, 880, 1403
BseRI GAGGAG 3 cut(s) 20, 690, 699
BseSI GKGCMC 2 cut(s) 694, 919
BseXI GCAGC 6 cut(s) 220, 376, 643, 791, 1135, 1220
Bsh1236I CGCG 4 cut(s) 43, 80, 104, 173
BshFI GGCC 1 cut(s) 554
BshNI GGYRCC 3 cut(s) 682, 887, 1309
BsiHKAI GWGCWC 3 cut(s) 694, 919, 1347
BsiSI CCGG 3 cut(s) 66, 639, 680
BslFI GGGAC 2 cut(s) 110, 204
BslI CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
BsmAI GTCTC 2 cut(s) 404, 1411
BsmFI GGGAC 2 cut(s) 110, 204
BsnI GGCC 1 cut(s) 554
Bsp1286I GDGCHC 5 cut(s) 74, 694, 919, 1199, 1347
Bsp143I GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 3 cut(s) 416, 819, 1427
BspFNI CGCG 4 cut(s) 43, 80, 104, 173
BspLI GGNNCC 5 cut(s) 114, 621, 684, 889, 1311
BspMI ACCTGC 2 cut(s) 703, 928
BspPI GGATC 4 cut(s) 107, 120, 144, 1019
BspT107I GGYRCC 3 cut(s) 682, 887, 1309
BsrDI GCAATG 2 cut(s) 1193, 1349
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 3 cut(s) 623, 880, 1403
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 4 cut(s) 66, 78, 171, 891
BssMI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
Bst2UI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
Bst4CI ACNGT 5 cut(s) 398, 1035, 1175, 1210, 1362
Bst6I CTCTTC 2 cut(s) 377, 731
BstAPI GCANNNNNTGC 3 cut(s) 419, 689, 1351
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 4 cut(s) 452, 809, 1231, 1347
BstDEI CTNAG 5 cut(s) 403, 744, 827, 1116, 1414
BstDSI CCRYGG 2 cut(s) 78, 171
BstF5I GGATG 5 cut(s) 780, 1058, 1144, 1261, 1387
BstFNI CGCG 4 cut(s) 43, 80, 104, 173
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 45, 55, 106
BstKTI GATC 6 cut(s) 115, 139, 362, 798, 1027, 1161
BstMAI GTCTC 2 cut(s) 404, 1411
BstMBI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
BstMWI GCNNNNNNNGC 9 cut(s) 83, 86, 233, 293, 419, 653, 689, 1265, 1351
BstNI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
BstNSI RCATGY 2 cut(s) 454, 467
BstSCI CCNGG 6 cut(s) 45, 65, 580, 685, 891, 1312
BstSFI CTRYAG 1 cut(s) 819
BstSLI GKGCMC 2 cut(s) 694, 919
BstUI CGCG 4 cut(s) 43, 80, 104, 173
BstV1I GCAGC 6 cut(s) 220, 376, 643, 791, 1135, 1220
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 2 cut(s) 112, 136
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 112, 136
BsuRI GGCC 1 cut(s) 554
BtgI CCRYGG 2 cut(s) 78, 171
BtsCI GGATG 5 cut(s) 780, 1058, 1144, 1261, 1387
BveI ACCTGC 2 cut(s) 703, 928
Cac8I GCNNGC 4 cut(s) 452, 809, 1231, 1347
CfoI GCGC 3 cut(s) 45, 55, 106
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 4 cut(s) 244, 552, 620, 938
Cfr42I CCGCGG 2 cut(s) 81, 174
CseI GACGC 2 cut(s) 49, 110
CsiI ACCWGGT 2 cut(s) 685, 1312
Csp6I GTAC 4 cut(s) 151, 888, 909, 1310
CviAII CATG 5 cut(s) 414, 451, 464, 542, 1370
CviQI GTAC 4 cut(s) 151, 888, 909, 1310
DdeI CTNAG 5 cut(s) 403, 744, 827, 1116, 1414
DpnI GATC 6 cut(s) 114, 138, 361, 797, 1026, 1160
DpnII GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
DraIII CACNNNGTG 1 cut(s) 689
DriI GACNNNNNGTC 1 cut(s) 822
Eam1104I CTCTTC 2 cut(s) 377, 731
Eam1105I GACNNNNNGTC 1 cut(s) 822
EarI CTCTTC 2 cut(s) 377, 731
EciI GGCGGA 2 cut(s) 191, 236
Eco24I GRGCYC 2 cut(s) 74, 1199
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 3 cut(s) 244, 620, 938
Eco57I CTGAAG 2 cut(s) 326, 712
EcoO109I RGGNCCY 2 cut(s) 244, 938
EcoRII CCWGG 5 cut(s) 45, 580, 685, 891, 1312
EcoRV GATATC 1 cut(s) 205
EcoT38I GRGCYC 2 cut(s) 74, 1199
FaeI CATG 5 cut(s) 417, 454, 467, 545, 1373
FaqI GGGAC 2 cut(s) 110, 204
FatI CATG 5 cut(s) 413, 450, 463, 541, 1369
FokI GGATG 5 cut(s) 787, 1065, 1151, 1268, 1394
FriOI GRGCYC 2 cut(s) 74, 1199
FspBI CTAG 1 cut(s) 912
GlaI GCGC 3 cut(s) 44, 54, 105
GsuI CTGGAG 3 cut(s) 68, 649, 1386
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 554
HapII CCGG 3 cut(s) 66, 639, 680
HgaI GACGC 2 cut(s) 49, 110
HhaI GCGC 3 cut(s) 45, 55, 106
Hin1II CATG 5 cut(s) 417, 454, 467, 545, 1373
Hin6I GCGC 3 cut(s) 43, 53, 104
HinP1I GCGC 3 cut(s) 43, 53, 104
HinfI GANTC 6 cut(s) 29, 508, 631, 859, 985, 1061
HpaII CCGG 3 cut(s) 66, 639, 680
HphI GGTGA 4 cut(s) 49, 199, 1021, 1352
Hpy166II GTNNAC 3 cut(s) 692, 917, 1090
Hpy188I TCNGA 8 cut(s) 141, 306, 364, 736, 828, 945, 969, 990
Hpy188III TCNNGA 2 cut(s) 628, 1136
Hpy8I GTNNAC 3 cut(s) 692, 917, 1090
Hpy99I CGWCG 2 cut(s) 104, 121
HpyAV CCTTC 7 cut(s) 153, 235, 344, 348, 559, 764, 994
HpyCH4III ACNGT 5 cut(s) 398, 1035, 1175, 1210, 1362
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 86, 233, 293, 419, 653, 689, 1265, 1351
HpyF3I CTNAG 5 cut(s) 403, 744, 827, 1116, 1414
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 5 cut(s) 417, 454, 467, 545, 1373
HspAI GCGC 3 cut(s) 43, 53, 104
KpnI GGTACC 2 cut(s) 891, 1313
KspI CCGCGG 2 cut(s) 81, 174
Kzo9I GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
LmnI GCTCC 3 cut(s) 664, 682, 703
Lsp1109I GCAGC 6 cut(s) 220, 376, 643, 791, 1135, 1220
LweI GCATC 3 cut(s) 1043, 1246, 1277
MabI ACCWGGT 2 cut(s) 685, 1312
MaeI CTAG 1 cut(s) 912
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 4 cut(s) 37, 649, 814, 835
MalI GATC 6 cut(s) 114, 138, 361, 797, 1026, 1160
MboI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
MboII GAAGA 5 cut(s) 193, 394, 482, 718, 862
MfeI CAATTG 3 cut(s) 1101, 1165, 1215
MflI RGATCY 2 cut(s) 112, 136
MhlI GDGCHC 5 cut(s) 74, 694, 919, 1199, 1347
MluCI AATT 9 cut(s) 299, 341, 491, 799, 1074, 1101, 1165, 1215, 1238
MlyI GAGTC 2 cut(s) 640, 1055
MmeI TCCRAC 3 cut(s) 180, 659, 947
MroXI GAANNNNTTC 1 cut(s) 163
MseI TTAA 2 cut(s) 600, 1247
MslI CAYNNNNRTG 1 cut(s) 1118
MspA1I CMGCKG 6 cut(s) 80, 109, 173, 647, 782, 1229
MspI CCGG 3 cut(s) 66, 639, 680
MspR9I CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
MunI CAATTG 3 cut(s) 1101, 1165, 1215
MvaI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
MvnI CGCG 4 cut(s) 43, 80, 104, 173
MwoI GCNNNNNNNGC 9 cut(s) 83, 86, 233, 293, 419, 653, 689, 1265, 1351
NciI CCSGG 1 cut(s) 67
NdeII GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
NlaIII CATG 5 cut(s) 417, 454, 467, 545, 1373
NlaIV GGNNCC 5 cut(s) 114, 621, 684, 889, 1311
NmuCI GTSAC 3 cut(s) 37, 814, 835
NspI RCATGY 2 cut(s) 454, 467
PaeI GCATGC 1 cut(s) 454
PaqCI CACCTGC 2 cut(s) 703, 928
PciI ACATGT 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 4 cut(s) 29, 508, 859, 985
PleI GAGTC 2 cut(s) 639, 1055
PpsI GAGTC 2 cut(s) 639, 1055
Ppu21I YACGTR 1 cut(s) 154
PpuMI RGGWCCY 2 cut(s) 244, 938
PscI ACATGT 1 cut(s) 463
Psp5II RGGWCCY 2 cut(s) 244, 938
Psp6I CCWGG 5 cut(s) 45, 580, 685, 891, 1312
PspGI CCWGG 5 cut(s) 45, 580, 685, 891, 1312
PspN4I GGNNCC 5 cut(s) 114, 621, 684, 889, 1311
PspPI GGNCC 4 cut(s) 244, 552, 620, 938
PspPPI RGGWCCY 2 cut(s) 244, 938
PsuI RGATCY 2 cut(s) 112, 136
PvuII CAGCTG 3 cut(s) 647, 782, 1229
RsaI GTAC 4 cut(s) 152, 889, 910, 1311
RsaNI GTAC 4 cut(s) 151, 888, 909, 1310
RseI CAYNNNNRTG 1 cut(s) 1118
SacII CCGCGG 2 cut(s) 81, 174
SaqAI TTAA 2 cut(s) 600, 1247
Sau3AI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
Sau96I GGNCC 4 cut(s) 244, 552, 620, 938
SchI GAGTC 2 cut(s) 640, 1055
ScrFI CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
SduI GDGCHC 5 cut(s) 74, 694, 919, 1199, 1347
SexAI ACCWGGT 2 cut(s) 685, 1312
SfaNI GCATC 3 cut(s) 1043, 1246, 1277
SfcI CTRYAG 1 cut(s) 819
Sfr303I CCGCGG 2 cut(s) 81, 174
SgrBI CCGCGG 2 cut(s) 81, 174
SinI GGWCC 3 cut(s) 244, 620, 938
SmiMI CAYNNNNRTG 1 cut(s) 1118
SpeI ACTAGT 1 cut(s) 911
SphI GCATGC 1 cut(s) 454
Sse9I AATT 9 cut(s) 299, 341, 491, 799, 1074, 1101, 1165, 1215, 1238
SspMI CTAG 1 cut(s) 912
StyD4I CCNGG 6 cut(s) 45, 65, 580, 685, 891, 1312
TaaI ACNGT 5 cut(s) 398, 1035, 1175, 1210, 1362
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 59, 132, 468, 516
TasI AATT 9 cut(s) 299, 341, 491, 799, 1074, 1101, 1165, 1215, 1238
TauI GCSGC 7 cut(s) 80, 83, 86, 89, 109, 173, 176
TfiI GAWTC 4 cut(s) 29, 508, 859, 985
Tru1I TTAA 2 cut(s) 600, 1247
Tru9I TTAA 2 cut(s) 600, 1247
TseFI GTSAC 3 cut(s) 37, 814, 835
TseI GCWGC 6 cut(s) 233, 389, 656, 779, 1148, 1233
Tsp45I GTSAC 3 cut(s) 37, 814, 835
TspDTI ATGAA 3 cut(s) 578, 863, 1358
TspGWI ACGGA 2 cut(s) 105, 603
VneI GTGCAC 2 cut(s) 690, 915
VpaK11BI GGWCC 3 cut(s) 244, 620, 938
XapI RAATTY 3 cut(s) 299, 491, 1074
XceI RCATGY 2 cut(s) 454, 467
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.