Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8011486.1

Orthogroup ID

OG0007202

Physical Location & Seq

Genomic Coordinates Reverse (-)

249 .. 533

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8011486.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

gcggcggcgagtggggacgacgcgccgctggatccgtcggttttggcgttcgaggatctgattgggcagtacgtgggtagggtttcggccgcggcggagaagattgggggacaggtgttggatatcaccaagattgtggcggaggcttttgctgcccagaaggacctgattatcaaggtcaagcaacacaaggtcagtgccaccctattctttgggcttttcgctttgagttttcatttccgtattcttttgtttgatttggattgggtgctggtttttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007163 GO:0007165 GO:0008092 GO:0008150 GO:0008154 GO:0008179 GO:0009653 GO:0009826 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0019899 GO:0023052 GO:0030029 GO:0030036 GO:0030863 GO:0030864 GO:0031279 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045761 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051339 GO:0051716 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0097435 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_C CAP_N

Protein Analysis

94

Amino Acids

10.18

Weight (kDa)

5.1

Isoelectric Point (pI)

15.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34490 AT4G34490
fragaria_vesca	FvH4_2g08710 FvH4_2g08710
malus_domestica	MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1
prunus_persica	Prupe.8G097900_v2.0.a1
pyrus_communis	pycom05g05800 pycom10g06010
rosa_chinensis	RchiOBHm_Chr6g0264151
rosa_laevigata	RLG00000014286 RLG00000014287
rosa_multiflora	Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570
rosa_rugosa	Rorug04G0194500 Rorug06G0007800
rosa_samantha	Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200
rosa_wichuraiana	Rw6G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	23, 92
AciI	CCGC	7 cut(s)	2, 5, 26, 90, 92, 95, 140
AclWI	GGATC	3 cut(s)	26, 39, 63
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	26, 39, 63
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	139
BisI	GCNGC	6 cut(s)	3, 6, 26, 90, 93, 153
BlsI	GCNGC	6 cut(s)	4, 7, 27, 91, 94, 154
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	2 cut(s)	23, 92
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	29, 123
BsmFI	GGGAC	2 cut(s)	29, 123
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	31, 55
BspACI	CCGC	7 cut(s)	2, 5, 26, 90, 92, 95, 140
BspANI	GGCC	1 cut(s)	89
BspFNI	CGCG	2 cut(s)	23, 92
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	3 cut(s)	26, 39, 63
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	31, 55
BstBAI	YACGTR	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	90
BstFNI	CGCG	2 cut(s)	23, 92
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	34, 58
BstMBI	GATC	2 cut(s)	31, 55
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstUI	CGCG	2 cut(s)	23, 92
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	31, 55
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	2 cut(s)	31, 55
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	202
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	163
Cfr42I	CCGCGG	1 cut(s)	93
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	3 cut(s)	89, 146, 217
CviKI_1	RGCY	3 cut(s)	89, 146, 217
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	2 cut(s)	33, 57
DpnII	GATC	2 cut(s)	31, 55
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
EciI	GGCGGA	2 cut(s)	110, 155
EclXI	CGGCCG	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	124
FaqI	GGGAC	2 cut(s)	29, 123
Fnu4HI	GCNGC	6 cut(s)	3, 6, 26, 90, 93, 153
Fsp4HI	GCNGC	6 cut(s)	3, 6, 26, 90, 93, 153
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	6 cut(s)	3, 6, 26, 90, 93, 153
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	60
Hpy99I	CGWCG	2 cut(s)	23, 40
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	72
HspAI	GCGC	1 cut(s)	23
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	31, 55
LpnPI	CCDG	5 cut(s)	14, 98, 170, 179, 257
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	72
MalI	GATC	2 cut(s)	33, 57
MboI	GATC	2 cut(s)	31, 55
MboII	GAAGA	1 cut(s)	112
MflI	RGATCY	2 cut(s)	31, 55
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	46, 136
MspA1I	CMGCKG	2 cut(s)	28, 92
MvnI	CGCG	2 cut(s)	23, 92
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	2 cut(s)	31, 55
NlaIV	GGNNCC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PkrI	GCNGC	6 cut(s)	4, 7, 27, 91, 94, 154
Ppu21I	YACGTR	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	31, 55
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SacII	CCGCGG	1 cut(s)	93
SatI	GCNGC	6 cut(s)	3, 6, 26, 90, 93, 153
Sau3AI	GATC	2 cut(s)	31, 55
Sau96I	GGNCC	1 cut(s)	163
SetI	ASST	5 cut(s)	75, 117, 168, 180, 195
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	163
SsiI	CCGC	7 cut(s)	2, 5, 26, 90, 92, 95, 140
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	5 cut(s)	5, 8, 28, 92, 95
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	24, 230
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.