Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007202

Physical Location & Seq

Genomic Coordinates Reverse (-)

19552130 .. 19556878

Gene Structure 4749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG125600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGGAGAAGCTGATACAGCGGCTTGAATCGGCGGTGACGCGCCTGGAGGCGCTGTCGCTGTCCGGGGGCTCTGCCGCGGCGGCGAGTGGGGACGACGCGCCGCTGGATCCGTCGGTTTTGGCGTTCGAGGATCTGATTGGGCAGTACGTGGGTAGGGTTTCTGCCGCGGCGGAGAAGATTGGGGGACAGGTGTTGGATATCACCAAGATTGTGGCGGAGGCTTTTGCTGCCCAGAAGGACCTGATTATCAAGGTCAAGCAACACAAGAAACCTGACAATGCAGGGTTGGCTGAATTTCTGAAGCCACTCAATGAGGTCATTACAAAGGCAAATAAATTGACAGAAGGAAGGCGATCTGATTTTTTCAATCACTTGAAGAGTGCTGCTGACAGTCTCTCAGCTTTAGCATGGATTGCCTATACAGGGAAAGAATGTGGTATGAGCATGCCTATTGCACATGTCGAAGAAAGTTGGCAGATGGCTGAATTTTACAACAACAAGATTCTTGTCGAGTATAAGACCAAAGACCCAAATCATGTAGAGTGGGCCAAAGCTATGAAGGAACTATATATGCCTGGTTTGAGAGAATATGTTAAGAGTTTCTATCCGTTGGGTCCAGTCTGGAGTCCAACCGGCACAGCTGTTACTGCTGCTCCATCAAAACCAAAAGCTCCGGCACCAGGTGCACCTGCTCCTCCACCTCCTCCATCGGCTTCACTCTTCAGTTCTGAAACTTCTAAGGCTTCGTCATCACGCCCGAAAGAAGGGATGGCAGCTGTTTTCCAAGAGATCAATTCTGGCAAGCCTGTGACTACAGGTCTGAGAAAGGTCACAGATGATATGAAGACAAAGAATCGTGCTGACAGAACTGGGGTTGTTGGTACCCAGGAGAAAGAAAGTCGTACTAGTGCACCTGCTGTTTCTAAAGTAGGACCTCCGAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGCTGTTGAGAATCAGATTGGAAAGAAGGATTTGGTGATTAGTGAATGTGATCCAAAACAGTCAGTATATATTTTTGGATGCAAAGACTCTGTTTTGCAAATTCAAGGTAATTTATCTATATGCCAAACTTTATTCCCAATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007163 GO:0007165 GO:0008092 GO:0008150 GO:0008154 GO:0008179 GO:0009653 GO:0009826 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0019899 GO:0023052 GO:0030029 GO:0030036 GO:0030863 GO:0030864 GO:0031279 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045761 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051339 GO:0051716 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0097435 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_C CAP_N

Protein Analysis

372

Amino Acids

40.19

Weight (kDa)

8.79

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP_N-CM	PF01213	3 - 32	2e-07	CAP N-terminal conserved motif
CAP_N	PF21938	43 - 204	1.6e-35	CAP, N-terminal domain
CAP_C	PF08603	313 - 361	5.3e-12	Adenylate cyclase associated (CAP) C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34490 AT4G34490
fragaria_vesca	FvH4_2g08710 FvH4_2g08710
malus_domestica	MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1
prunus_persica	Prupe.8G097900_v2.0.a1
pyrus_communis	pycom05g05800 pycom10g06010
rosa_chinensis	RchiOBHm_Chr6g0264151
rosa_laevigata	RLG00000014286 RLG00000014287
rosa_multiflora	Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570
rosa_rugosa	Rorug04G0194500 Rorug06G0007800
rosa_samantha	Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200
rosa_wichuraiana	Rw6G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	700, 925
Acc36I	ACCTGC	2 cut(s)	700, 925
Acc65I	GGTACC	1 cut(s)	884
AccB1I	GGYRCC	2 cut(s)	679, 884
AccII	CGCG	4 cut(s)	43, 80, 101, 170
AclWI	GGATC	4 cut(s)	104, 117, 141, 1016
AcsI	RAATTY	3 cut(s)	296, 488, 1071
AcuI	CTGAAG	2 cut(s)	323, 709
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	149, 886, 907
AfiI	CCNNNNNNNGG	3 cut(s)	426, 683, 767
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	5 cut(s)	29, 370, 379, 956, 1076
AhdI	GACNNNNNGTC	1 cut(s)	819
AhlI	ACTAGT	1 cut(s)	908
AjnI	CCWGG	4 cut(s)	45, 577, 682, 888
AluBI	AGCT	7 cut(s)	13, 404, 557, 644, 674, 779, 952
AluI	AGCT	7 cut(s)	13, 404, 557, 644, 674, 779, 952
Alw21I	GWGCWC	2 cut(s)	691, 916
Alw26I	GTCTC	1 cut(s)	401
Alw44I	GTGCAC	2 cut(s)	687, 912
AlwI	GGATC	4 cut(s)	104, 117, 141, 1016
AoxI	GGCC	1 cut(s)	549
ApaLI	GTGCAC	2 cut(s)	687, 912
ApeKI	GCWGC	4 cut(s)	230, 386, 653, 776
ApoI	RAATTY	3 cut(s)	296, 488, 1071
Asp718I	GGTACC	1 cut(s)	884
AspLEI	GCGC	3 cut(s)	45, 55, 103
AspS9I	GGNCC	4 cut(s)	241, 549, 617, 935
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	49, 196, 1018
AvaII	GGWCC	3 cut(s)	241, 617, 935
BaeGI	GKGCMC	2 cut(s)	691, 916
BamHI	GGATCC	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	679, 884
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	2 cut(s)	691, 916
BbvI	GCAGC	4 cut(s)	217, 373, 640, 788
BccI	CCATC	4 cut(s)	475, 667, 718, 766
BciT130I	CCWGG	4 cut(s)	47, 579, 684, 890
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	401
BcuI	ACTAGT	1 cut(s)	908
BfaI	CTAG	1 cut(s)	909
BfmI	CTRYAG	1 cut(s)	816
BfoI	RGCGCY	1 cut(s)	56
BfuAI	ACCTGC	2 cut(s)	700, 925
BglI	GCCNNNNNGGC	1 cut(s)	83
Bme1390I	CCNGG	5 cut(s)	47, 67, 579, 684, 890
Bme18I	GGWCC	3 cut(s)	241, 617, 935
BmeRI	GACNNNNNGTC	1 cut(s)	819
BmgT120I	GGNCC	4 cut(s)	241, 549, 617, 935
BmiI	GGNNCC	4 cut(s)	111, 618, 681, 886
BmrFI	CCNGG	5 cut(s)	47, 67, 579, 684, 890
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	1 cut(s)	1040
BmuI	ACTGGG	1 cut(s)	882
BpiI	GAAGAC	1 cut(s)	854
BpmI	CTGGAG	2 cut(s)	68, 646
BpuMI	CCSGG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	4 cut(s)	66, 78, 168, 888
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 640, 670
Bsc4I	CCNNNNNNNGG	3 cut(s)	426, 683, 767
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	2 cut(s)	620, 877
BseBI	CCWGG	4 cut(s)	47, 579, 684, 890
BseDI	CCNNGG	4 cut(s)	66, 78, 168, 888
BseGI	GGATG	2 cut(s)	777, 1055
BseLI	CCNNNNNNNGG	3 cut(s)	426, 683, 767
BseMII	CTCAG	2 cut(s)	414, 815
BseNI	ACTGG	2 cut(s)	620, 877
BseRI	GAGGAG	3 cut(s)	20, 687, 696
BseSI	GKGCMC	2 cut(s)	691, 916
BseXI	GCAGC	4 cut(s)	217, 373, 640, 788
Bsh1236I	CGCG	4 cut(s)	43, 80, 101, 170
BshFI	GGCC	1 cut(s)	551
BshNI	GGYRCC	2 cut(s)	679, 884
BsiHKAI	GWGCWC	2 cut(s)	691, 916
BsiSI	CCGG	3 cut(s)	66, 636, 677
BslFI	GGGAC	2 cut(s)	107, 201
BslI	CCNNNNNNNGG	3 cut(s)	426, 683, 767
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	107, 201
BsnI	GGCC	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	74, 691, 916
Bsp143I	GATC	5 cut(s)	109, 133, 356, 792, 1021
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	2 cut(s)	413, 816
BspFNI	CGCG	4 cut(s)	43, 80, 101, 170
BspLI	GGNNCC	4 cut(s)	111, 618, 681, 886
BspMI	ACCTGC	2 cut(s)	700, 925
BspPI	GGATC	4 cut(s)	104, 117, 141, 1016
BspT107I	GGYRCC	2 cut(s)	679, 884
BsrFI	RCCGGY	1 cut(s)	635
BsrI	ACTGG	2 cut(s)	620, 877
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	4 cut(s)	66, 78, 168, 888
BssMI	GATC	5 cut(s)	109, 133, 356, 792, 1021
Bst2UI	CCWGG	4 cut(s)	47, 579, 684, 890
Bst4CI	ACNGT	2 cut(s)	395, 1032
Bst6I	CTCTTC	2 cut(s)	374, 728
BstAPI	GCANNNNNTGC	2 cut(s)	416, 686
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	449, 806
BstDEI	CTNAG	3 cut(s)	400, 741, 824
BstDSI	CCRYGG	2 cut(s)	78, 168
BstF5I	GGATG	2 cut(s)	777, 1055
BstFNI	CGCG	4 cut(s)	43, 80, 101, 170
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	3 cut(s)	45, 55, 103
BstKTI	GATC	5 cut(s)	112, 136, 359, 795, 1024
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	5 cut(s)	109, 133, 356, 792, 1021
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 83, 230, 290, 416, 650, 686
BstNI	CCWGG	4 cut(s)	47, 579, 684, 890
BstNSI	RCATGY	2 cut(s)	451, 464
BstSCI	CCNGG	5 cut(s)	45, 65, 577, 682, 888
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	2 cut(s)	691, 916
BstUI	CGCG	4 cut(s)	43, 80, 101, 170
BstV1I	GCAGC	4 cut(s)	217, 373, 640, 788
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	2 cut(s)	109, 133
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	2 cut(s)	109, 133
BsuRI	GGCC	1 cut(s)	551
BtgI	CCRYGG	2 cut(s)	78, 168
BtsCI	GGATG	2 cut(s)	777, 1055
BveI	ACCTGC	2 cut(s)	700, 925
Cac8I	GCNNGC	2 cut(s)	449, 806
CfoI	GCGC	3 cut(s)	45, 55, 103
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	4 cut(s)	241, 549, 617, 935
Cfr42I	CCGCGG	2 cut(s)	81, 171
CseI	GACGC	2 cut(s)	49, 107
CsiI	ACCWGGT	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	148, 885, 906
CviAII	CATG	4 cut(s)	411, 448, 461, 539
CviQI	GTAC	3 cut(s)	148, 885, 906
DdeI	CTNAG	3 cut(s)	400, 741, 824
DpnI	GATC	5 cut(s)	111, 135, 358, 794, 1023
DpnII	GATC	5 cut(s)	109, 133, 356, 792, 1021
DraIII	CACNNNGTG	1 cut(s)	686
DriI	GACNNNNNGTC	1 cut(s)	819
Eam1104I	CTCTTC	2 cut(s)	374, 728
Eam1105I	GACNNNNNGTC	1 cut(s)	819
EarI	CTCTTC	2 cut(s)	374, 728
EciI	GGCGGA	2 cut(s)	188, 233
Eco24I	GRGCYC	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	3 cut(s)	241, 617, 935
Eco57I	CTGAAG	2 cut(s)	323, 709
EcoO109I	RGGNCCY	2 cut(s)	241, 935
EcoRII	CCWGG	4 cut(s)	45, 577, 682, 888
EcoRV	GATATC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	4 cut(s)	414, 451, 464, 542
FaqI	GGGAC	2 cut(s)	107, 201
FatI	CATG	4 cut(s)	410, 447, 460, 538
FokI	GGATG	2 cut(s)	784, 1062
FriOI	GRGCYC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	909
GlaI	GCGC	3 cut(s)	44, 54, 102
GsuI	CTGGAG	2 cut(s)	68, 646
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	551
HapII	CCGG	3 cut(s)	66, 636, 677
HgaI	GACGC	2 cut(s)	49, 107
HhaI	GCGC	3 cut(s)	45, 55, 103
Hin1II	CATG	4 cut(s)	414, 451, 464, 542
Hin6I	GCGC	3 cut(s)	43, 53, 101
HinP1I	GCGC	3 cut(s)	43, 53, 101
HinfI	GANTC	6 cut(s)	29, 505, 628, 856, 982, 1058
HpaII	CCGG	3 cut(s)	66, 636, 677
HphI	GGTGA	3 cut(s)	49, 196, 1018
Hpy166II	GTNNAC	2 cut(s)	689, 914
Hpy188I	TCNGA	8 cut(s)	138, 303, 361, 733, 825, 942, 966, 987
Hpy188III	TCNNGA	1 cut(s)	625
Hpy8I	GTNNAC	2 cut(s)	689, 914
Hpy99I	CGWCG	2 cut(s)	101, 118
HpyAV	CCTTC	6 cut(s)	232, 341, 345, 556, 761, 991
HpyCH4III	ACNGT	2 cut(s)	395, 1032
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	284, 458, 689, 914, 1053, 1069
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 83, 230, 290, 416, 650, 686
HpyF3I	CTNAG	3 cut(s)	400, 741, 824
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	414, 451, 464, 542
HspAI	GCGC	3 cut(s)	43, 53, 101
KpnI	GGTACC	1 cut(s)	888
KspI	CCGCGG	2 cut(s)	81, 171
Kzo9I	GATC	5 cut(s)	109, 133, 356, 792, 1021
LmnI	GCTCC	3 cut(s)	661, 679, 700
Lsp1109I	GCAGC	4 cut(s)	217, 373, 640, 788
LweI	GCATC	1 cut(s)	1040
MabI	ACCWGGT	1 cut(s)	682
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	37, 646, 811, 832
MalI	GATC	5 cut(s)	111, 135, 358, 794, 1023
MboI	GATC	5 cut(s)	109, 133, 356, 792, 1021
MboII	GAAGA	5 cut(s)	190, 391, 479, 715, 859
MfeI	CAATTG	1 cut(s)	1110
MflI	RGATCY	2 cut(s)	109, 133
MhlI	GDGCHC	3 cut(s)	74, 691, 916
MluCI	AATT	7 cut(s)	296, 338, 488, 796, 1071, 1081, 1110
MlyI	GAGTC	2 cut(s)	637, 1052
MmeI	TCCRAC	3 cut(s)	177, 656, 944
MnlI	CCTC	8 cut(s)	43, 124, 214, 310, 708, 714, 717, 948
MseI	TTAA	1 cut(s)	597
MspA1I	CMGCKG	6 cut(s)	22, 80, 106, 170, 644, 779
MspI	CCGG	3 cut(s)	66, 636, 677
MspR9I	CCNGG	5 cut(s)	47, 67, 579, 684, 890
MunI	CAATTG	1 cut(s)	1110
MvaI	CCWGG	4 cut(s)	47, 579, 684, 890
MvnI	CGCG	4 cut(s)	43, 80, 101, 170
MwoI	GCNNNNNNNGC	7 cut(s)	19, 83, 230, 290, 416, 650, 686
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	109, 133, 356, 792, 1021
NlaIII	CATG	4 cut(s)	414, 451, 464, 542
NlaIV	GGNNCC	4 cut(s)	111, 618, 681, 886
NmuCI	GTSAC	3 cut(s)	37, 811, 832
NspI	RCATGY	2 cut(s)	451, 464
PaeI	GCATGC	1 cut(s)	451
PaqCI	CACCTGC	2 cut(s)	700, 925
PciI	ACATGT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	29, 505, 856, 982
PleI	GAGTC	2 cut(s)	636, 1052
PpsI	GAGTC	2 cut(s)	636, 1052
Ppu21I	YACGTR	1 cut(s)	151
PpuMI	RGGWCCY	2 cut(s)	241, 935
PscI	ACATGT	1 cut(s)	460
Psp5II	RGGWCCY	2 cut(s)	241, 935
Psp6I	CCWGG	4 cut(s)	45, 577, 682, 888
PspGI	CCWGG	4 cut(s)	45, 577, 682, 888
PspN4I	GGNNCC	4 cut(s)	111, 618, 681, 886
PspPI	GGNCC	4 cut(s)	241, 549, 617, 935
PspPPI	RGGWCCY	2 cut(s)	241, 935
PsuI	RGATCY	2 cut(s)	109, 133
PvuII	CAGCTG	2 cut(s)	644, 779
RsaI	GTAC	3 cut(s)	149, 886, 907
RsaNI	GTAC	3 cut(s)	148, 885, 906
SacII	CCGCGG	2 cut(s)	81, 171
SaqAI	TTAA	1 cut(s)	597
Sau3AI	GATC	5 cut(s)	109, 133, 356, 792, 1021
Sau96I	GGNCC	4 cut(s)	241, 549, 617, 935
SchI	GAGTC	2 cut(s)	637, 1052
ScrFI	CCNGG	5 cut(s)	47, 67, 579, 684, 890
SduI	GDGCHC	3 cut(s)	74, 691, 916
SexAI	ACCWGGT	1 cut(s)	682
SfaNI	GCATC	1 cut(s)	1040
SfcI	CTRYAG	1 cut(s)	816
Sfr303I	CCGCGG	2 cut(s)	81, 171
SgrBI	CCGCGG	2 cut(s)	81, 171
SinI	GGWCC	3 cut(s)	241, 617, 935
SpeI	ACTAGT	1 cut(s)	908
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	7 cut(s)	296, 338, 488, 796, 1071, 1081, 1110
SspMI	CTAG	1 cut(s)	909
StyD4I	CCNGG	5 cut(s)	45, 65, 577, 682, 888
TaaI	ACNGT	2 cut(s)	395, 1032
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	129, 465, 513
TasI	AATT	7 cut(s)	296, 338, 488, 796, 1071, 1081, 1110
TauI	GCSGC	7 cut(s)	25, 80, 83, 86, 106, 170, 173
TfiI	GAWTC	4 cut(s)	29, 505, 856, 982
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TseFI	GTSAC	3 cut(s)	37, 811, 832
TseI	GCWGC	4 cut(s)	230, 386, 653, 776
Tsp45I	GTSAC	3 cut(s)	37, 811, 832
TspDTI	ATGAA	2 cut(s)	575, 860
TspGWI	ACGGA	2 cut(s)	102, 600
VneI	GTGCAC	2 cut(s)	687, 912
VpaK11BI	GGWCC	3 cut(s)	241, 617, 935
XapI	RAATTY	3 cut(s)	296, 488, 1071
XceI	RCATGY	2 cut(s)	451, 464
XspI	CTAG	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.