Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007202

Physical Location & Seq

Genomic Coordinates Reverse (-)

19667626 .. 19672173

Gene Structure 4548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGCATGCCTATTGCACATGTCGAAGAAAGTTGGCAGATGGCTGAATTTTACAACAACAAGATTCTTGTCGAGTATAAGACCAAAGACCCAAATCATGTAGAGTGGGCCAAAGCTATGAAGGAACTATATATGCCTGGTTTGAGAGAATATGTTAAGAGTTTCTATCCGTTGGGTCCAGTCTGGAGTCCAACCGGCACAGCTGTTACTGCTGCTCCATCAAAACCAAAAGCTCCGGCACCAGGTGCACCTGCTCCTCCACCTCCTCCATCGGCTTCACTCTTCAGTTCTGAAACTTCTAAGGCTTCGTCATCACGCCCGAAAGAAGGGATGGCAGCTGTTTTCCAAGAGATCAATTCTGGCAAGCCTGTGACTACAGGTCTGAGAAAGGTCACAGATGATATGAAGACAAAGAATCGTGCTGACAGAACTGGGGTTGTTGGTACCCAGGAGAAAGAAAGTCGTACTAGTGCACCTGCTGTTTCTAAAGTAGGACCTCCGAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGCTGTTGAGAATCAGATTGGAAAGAAGGATTTGGTGATTAGTGAATGTGATCCAAAACAGTCGGTATATATTTTTGGATGCAAAGACTCTGTTTTGCAAATTCAAGGGAAAGTGAACAACATTACAATTGACAAATGCACTAAGATGGGAGTTGTATTTCAGGATGTTGTGGCTGCTTTTGAGATCGTCAATTGCAACCGTGTTGAGGTGCAATGTCAGGGCTCCGCCCCAACAGTTTCAATTGACAACACAGCTGGCTGCCAATTTTATTTAAGCAAGGATGCTCTATCTGCATCTATAACAACGGCTAAATCAAGTGAAGTGAATATAATGGTACCTGGTGCTGAACCTGATGGCGATTGGGGTGAGCACGCATTGCCAGAACAGTTTATTCATGTGTATAAGGATGGTCGCTTTGAAACAACTCCAGTCTCTCACTCAGCAGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007163 GO:0007165 GO:0008092 GO:0008150 GO:0008154 GO:0008179 GO:0009653 GO:0009826 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0019899 GO:0023052 GO:0030029 GO:0030036 GO:0030863 GO:0030864 GO:0031279 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045761 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051339 GO:0051716 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0097435 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_C CAP_N

Protein Analysis

327

Amino Acids

35.43

Weight (kDa)

7.58

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP_N	PF21938	3 - 57	5e-12	CAP, N-terminal domain
CAP_C	PF08603	166 - 323	3.9e-62	Adenylate cyclase associated (CAP) C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34490 AT4G34490
fragaria_vesca	FvH4_2g08710 FvH4_2g08710
malus_domestica	MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1
prunus_persica	Prupe.8G097900_v2.0.a1
pyrus_communis	pycom05g05800 pycom10g06010
rosa_chinensis	RchiOBHm_Chr6g0264151
rosa_laevigata	RLG00000014286 RLG00000014287
rosa_multiflora	Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570
rosa_rugosa	Rorug04G0194500 Rorug06G0007800
rosa_samantha	Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200
rosa_wichuraiana	Rw6G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	259, 484
Acc36I	ACCTGC	2 cut(s)	259, 484
Acc65I	GGTACC	2 cut(s)	443, 865
AccB1I	GGYRCC	3 cut(s)	238, 443, 865
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	47, 630
AcuI	CTGAAG	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	3 cut(s)	445, 466, 867
AfiI	CCNNNNNNNGG	3 cut(s)	242, 326, 736
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	515, 635, 771, 950
AhdI	GACNNNNNGTC	1 cut(s)	378
AhlI	ACTAGT	1 cut(s)	467
AjnI	CCWGG	4 cut(s)	136, 241, 447, 868
AluBI	AGCT	6 cut(s)	116, 203, 233, 338, 511, 785
AluI	AGCT	6 cut(s)	116, 203, 233, 338, 511, 785
Alw21I	GWGCWC	3 cut(s)	250, 475, 903
Alw26I	GTCTC	1 cut(s)	967
Alw44I	GTGCAC	2 cut(s)	246, 471
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	108
ApaLI	GTGCAC	2 cut(s)	246, 471
ApeKI	GCWGC	4 cut(s)	212, 335, 704, 789
ApoI	RAATTY	2 cut(s)	47, 630
Asp718I	GGTACC	2 cut(s)	443, 865
AspS9I	GGNCC	3 cut(s)	108, 176, 494
AsuHPI	GGTGA	2 cut(s)	577, 908
AvaII	GGWCC	2 cut(s)	176, 494
BaeGI	GKGCMC	2 cut(s)	250, 475
BanI	GGYRCC	3 cut(s)	238, 443, 865
BanII	GRGCYC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	3 cut(s)	250, 475, 903
BbvI	GCAGC	4 cut(s)	199, 347, 691, 776
BccI	CCATC	7 cut(s)	34, 226, 277, 325, 670, 878, 932
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	4 cut(s)	138, 243, 449, 870
BcoDI	GTCTC	1 cut(s)	967
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	2 cut(s)	259, 484
BisI	GCNGC	4 cut(s)	213, 336, 705, 790
BlsI	GCNGC	4 cut(s)	214, 337, 706, 791
Bme1390I	CCNGG	4 cut(s)	138, 243, 449, 870
Bme18I	GGWCC	2 cut(s)	176, 494
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	108, 176, 494
BmiI	GGNNCC	5 cut(s)	177, 240, 445, 754, 867
BmrFI	CCNGG	4 cut(s)	138, 243, 449, 870
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	3 cut(s)	599, 802, 833
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	2 cut(s)	205, 942
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 326, 736
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	3 cut(s)	179, 436, 959
Bse3DI	GCAATG	2 cut(s)	749, 905
BseBI	CCWGG	4 cut(s)	138, 243, 449, 870
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	5 cut(s)	336, 614, 700, 817, 943
BseLI	CCNNNNNNNGG	3 cut(s)	242, 326, 736
BseMI	GCAATG	2 cut(s)	749, 905
BseMII	CTCAG	2 cut(s)	374, 984
BseNI	ACTGG	3 cut(s)	179, 436, 959
BseRI	GAGGAG	2 cut(s)	246, 255
BseSI	GKGCMC	2 cut(s)	250, 475
BseXI	GCAGC	4 cut(s)	199, 347, 691, 776
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	3 cut(s)	238, 443, 865
BsiHKAI	GWGCWC	3 cut(s)	250, 475, 903
BsiSI	CCGG	2 cut(s)	195, 236
BslI	CCNNNNNNNGG	3 cut(s)	242, 326, 736
BsmAI	GTCTC	1 cut(s)	967
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	4 cut(s)	250, 475, 755, 903
Bsp143I	GATC	3 cut(s)	351, 580, 714
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	375, 983
BspLI	GGNNCC	5 cut(s)	177, 240, 445, 754, 867
BspMI	ACCTGC	2 cut(s)	259, 484
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	3 cut(s)	238, 443, 865
BsrDI	GCAATG	2 cut(s)	749, 905
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	179, 436, 959
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	3 cut(s)	351, 580, 714
Bst2UI	CCWGG	4 cut(s)	138, 243, 449, 870
Bst4CI	ACNGT	4 cut(s)	591, 731, 766, 918
Bst6I	CTCTTC	1 cut(s)	287
BstAPI	GCANNNNNTGC	2 cut(s)	245, 907
BstC8I	GCNNGC	4 cut(s)	8, 365, 787, 903
BstDEI	CTNAG	4 cut(s)	300, 383, 672, 970
BstF5I	GGATG	5 cut(s)	336, 614, 700, 817, 943
BstKTI	GATC	3 cut(s)	354, 583, 717
BstMAI	GTCTC	1 cut(s)	967
BstMBI	GATC	3 cut(s)	351, 580, 714
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 245, 821, 907
BstNI	CCWGG	4 cut(s)	138, 243, 449, 870
BstNSI	RCATGY	2 cut(s)	10, 23
BstSCI	CCNGG	4 cut(s)	136, 241, 447, 868
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	2 cut(s)	250, 475
BstV1I	GCAGC	4 cut(s)	199, 347, 691, 776
BstV2I	GAAGAC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	5 cut(s)	336, 614, 700, 817, 943
BveI	ACCTGC	2 cut(s)	259, 484
Cac8I	GCNNGC	4 cut(s)	8, 365, 787, 903
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	108, 176, 494
CsiI	ACCWGGT	2 cut(s)	241, 868
Csp6I	GTAC	3 cut(s)	444, 465, 866
CviAII	CATG	4 cut(s)	7, 20, 98, 926
CviQI	GTAC	3 cut(s)	444, 465, 866
DdeI	CTNAG	4 cut(s)	300, 383, 672, 970
DpnI	GATC	3 cut(s)	353, 582, 716
DpnII	GATC	3 cut(s)	351, 580, 714
DraIII	CACNNNGTG	1 cut(s)	245
DriI	GACNNNNNGTC	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	287
Eam1105I	GACNNNNNGTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	176, 494
Eco57I	CTGAAG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	4 cut(s)	136, 241, 447, 868
EcoT38I	GRGCYC	1 cut(s)	755
FaeI	CATG	4 cut(s)	10, 23, 101, 929
FatI	CATG	4 cut(s)	6, 19, 97, 925
Fnu4HI	GCNGC	4 cut(s)	213, 336, 705, 790
FokI	GGATG	5 cut(s)	343, 621, 707, 824, 950
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	4 cut(s)	213, 336, 705, 790
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	4 cut(s)	213, 336, 705, 790
GsuI	CTGGAG	2 cut(s)	205, 942
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	2 cut(s)	195, 236
Hin1II	CATG	4 cut(s)	10, 23, 101, 929
HinfI	GANTC	5 cut(s)	64, 187, 415, 541, 617
HpaII	CCGG	2 cut(s)	195, 236
HphI	GGTGA	2 cut(s)	577, 908
Hpy166II	GTNNAC	3 cut(s)	248, 473, 646
Hpy188I	TCNGA	5 cut(s)	292, 384, 501, 525, 546
Hpy188III	TCNNGA	2 cut(s)	184, 692
Hpy8I	GTNNAC	3 cut(s)	248, 473, 646
HpyAV	CCTTC	3 cut(s)	115, 320, 550
HpyCH4III	ACNGT	4 cut(s)	591, 731, 766, 918
HpyCH4V	TGCA	9 cut(s)	17, 248, 473, 612, 628, 669, 726, 742, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 245, 821, 907
HpyF3I	CTNAG	4 cut(s)	300, 383, 672, 970
Hsp92II	CATG	4 cut(s)	10, 23, 101, 929
KpnI	GGTACC	2 cut(s)	447, 869
Kzo9I	GATC	3 cut(s)	351, 580, 714
LmnI	GCTCC	4 cut(s)	220, 238, 259, 758
Lsp1109I	GCAGC	4 cut(s)	199, 347, 691, 776
LweI	GCATC	3 cut(s)	599, 802, 833
MabI	ACCWGGT	2 cut(s)	241, 868
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	205, 370, 391
MalI	GATC	3 cut(s)	353, 582, 716
MboI	GATC	3 cut(s)	351, 580, 714
MboII	GAAGA	3 cut(s)	38, 274, 418
MfeI	CAATTG	3 cut(s)	657, 721, 771
MhlI	GDGCHC	4 cut(s)	250, 475, 755, 903
MluCI	AATT	7 cut(s)	47, 355, 630, 657, 721, 771, 794
MlyI	GAGTC	2 cut(s)	196, 611
MmeI	TCCRAC	2 cut(s)	215, 503
MnlI	CCTC	6 cut(s)	267, 273, 276, 507, 730, 971
MseI	TTAA	2 cut(s)	156, 803
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	3 cut(s)	203, 338, 785
MspI	CCGG	2 cut(s)	195, 236
MspR9I	CCNGG	4 cut(s)	138, 243, 449, 870
MunI	CAATTG	3 cut(s)	657, 721, 771
MvaI	CCWGG	4 cut(s)	138, 243, 449, 870
MwoI	GCNNNNNNNGC	4 cut(s)	209, 245, 821, 907
NdeII	GATC	3 cut(s)	351, 580, 714
NlaIII	CATG	4 cut(s)	10, 23, 101, 929
NlaIV	GGNNCC	5 cut(s)	177, 240, 445, 754, 867
NmuCI	GTSAC	2 cut(s)	370, 391
NspI	RCATGY	2 cut(s)	10, 23
PaeI	GCATGC	1 cut(s)	10
PaqCI	CACCTGC	2 cut(s)	259, 484
PciI	ACATGT	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	64, 415, 541
PkrI	GCNGC	4 cut(s)	214, 337, 706, 791
PleI	GAGTC	2 cut(s)	195, 611
PpsI	GAGTC	2 cut(s)	195, 611
PpuMI	RGGWCCY	1 cut(s)	494
PscI	ACATGT	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	4 cut(s)	136, 241, 447, 868
PspGI	CCWGG	4 cut(s)	136, 241, 447, 868
PspN4I	GGNNCC	5 cut(s)	177, 240, 445, 754, 867
PspPI	GGNCC	3 cut(s)	108, 176, 494
PspPPI	RGGWCCY	1 cut(s)	494
PvuII	CAGCTG	3 cut(s)	203, 338, 785
RsaI	GTAC	3 cut(s)	445, 466, 867
RsaNI	GTAC	3 cut(s)	444, 465, 866
RseI	CAYNNNNRTG	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	156, 803
SatI	GCNGC	4 cut(s)	213, 336, 705, 790
Sau3AI	GATC	3 cut(s)	351, 580, 714
Sau96I	GGNCC	3 cut(s)	108, 176, 494
SchI	GAGTC	2 cut(s)	196, 611
ScrFI	CCNGG	4 cut(s)	138, 243, 449, 870
SduI	GDGCHC	4 cut(s)	250, 475, 755, 903
SexAI	ACCWGGT	2 cut(s)	241, 868
SfaNI	GCATC	3 cut(s)	599, 802, 833
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	2 cut(s)	176, 494
SmiMI	CAYNNNNRTG	1 cut(s)	674
SpeI	ACTAGT	1 cut(s)	467
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	7 cut(s)	47, 355, 630, 657, 721, 771, 794
SsiI	CCGC	1 cut(s)	756
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	4 cut(s)	136, 241, 447, 868
TaaI	ACNGT	4 cut(s)	591, 731, 766, 918
TaqI	TCGA	2 cut(s)	24, 72
TasI	AATT	7 cut(s)	47, 355, 630, 657, 721, 771, 794
TfiI	GAWTC	3 cut(s)	64, 415, 541
Tru1I	TTAA	2 cut(s)	156, 803
Tru9I	TTAA	2 cut(s)	156, 803
TseFI	GTSAC	2 cut(s)	370, 391
TseI	GCWGC	4 cut(s)	212, 335, 704, 789
Tsp45I	GTSAC	2 cut(s)	370, 391
TspDTI	ATGAA	3 cut(s)	134, 419, 914
TspGWI	ACGGA	1 cut(s)	159
VneI	GTGCAC	2 cut(s)	246, 471
VpaK11BI	GGWCC	2 cut(s)	176, 494
XapI	RAATTY	2 cut(s)	47, 630
XceI	RCATGY	2 cut(s)	10, 23
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.