Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0007202

Physical Location & Seq

Genomic Coordinates Reverse (-)

1179019 .. 1180900

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGGAGAAGCTGATACAAAGGCTTGAATCGGCGGTGACGCGCCTGGAGGCGCTGTCAATGTCCTGGGGCTCTGCGGCGGCGGCGGCGGCGGCGAGTGGGGACGACGCGCCGCTGGATCCGTCGGTTTTGGCGTTCGAGGATCTGATTGGGCAGTACGTGGGTAGGGTTTCGGCCGCGGCGGAGAAGATTGGGGGACAGGTGTTGGATATCACCAAGATTGTGGAAGAGGCTTTTGCTGCACAGAAGGACCTGATTATCAAGAAACCTGACAATGCAGGGTTGGCTGAATTTCTGAAGCCACTCAATGAGGTCATTACAAAGGCAAATAAATTGACAGAAGGAAGGCGATCTGACTTTTTCAATCGCTTGAAGAGTGCTGCTGATAGTCTCTCAGCTTTAGCATGGATTGCCTATACGGGGAAAGAATGTGGTATGAGCATGCCTATTGCACATGTCGAAGAAAGTTGGCAGATGGCTGAATTTTACAACAACAAGATTCTTGTCGATTATAAAACCAAAGACCCAGTATCACTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007163 GO:0007165 GO:0008092 GO:0008150 GO:0008154 GO:0008179 GO:0009653 GO:0009826 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0019899 GO:0023052 GO:0030029 GO:0030036 GO:0030863 GO:0030864 GO:0031279 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045761 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051339 GO:0051716 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0097435 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_C CAP_N

Protein Analysis

180

Amino Acids

19.59

Weight (kDa)

4.93

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP_N-CM	PF01213	3 - 35	3.2e-08	CAP N-terminal conserved motif
CAP_N	PF21938	46 - 177	8e-24	CAP, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34490 AT4G34490
fragaria_vesca	FvH4_2g08710 FvH4_2g08710
malus_domestica	MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1
prunus_persica	Prupe.8G097900_v2.0.a1
pyrus_communis	pycom05g05800 pycom10g06010
rosa_chinensis	RchiOBHm_Chr6g0264151
rosa_laevigata	RLG00000014286 RLG00000014287
rosa_multiflora	Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570
rosa_rugosa	Rorug04G0194500 Rorug06G0007800
rosa_samantha	Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200
rosa_wichuraiana	Rw6G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccII	CGCG	3 cut(s)	43, 110, 179
AclWI	GGATC	3 cut(s)	113, 126, 150
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	290, 482
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	3 cut(s)	29, 364, 373
AjnI	CCWGG	2 cut(s)	45, 65
AluBI	AGCT	2 cut(s)	13, 398
AluI	AGCT	2 cut(s)	13, 398
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	3 cut(s)	113, 126, 150
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	239, 380
ApoI	RAATTY	2 cut(s)	290, 482
AspLEI	GCGC	3 cut(s)	45, 55, 112
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	49, 205
AvaII	GGWCC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	226, 367
BccI	CCATC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	47, 67
BcoDI	GTCTC	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	47, 67
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	47, 67
BmrI	ACTGGG	1 cut(s)	521
BmuI	ACTGGG	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	66, 177
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	47, 67
BseDI	CCNNGG	2 cut(s)	66, 177
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	226, 367
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	3 cut(s)	43, 110, 179
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	116, 210
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	116, 210
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	118, 142, 350
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	407
BspFNI	CGCG	3 cut(s)	43, 110, 179
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	3 cut(s)	113, 126, 150
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	66, 177
BssMI	GATC	3 cut(s)	118, 142, 350
Bst2UI	CCWGG	2 cut(s)	47, 67
Bst6I	CTCTTC	2 cut(s)	222, 368
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	394
BstDSI	CCRYGG	1 cut(s)	177
BstFNI	CGCG	3 cut(s)	43, 110, 179
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	3 cut(s)	45, 55, 112
BstKTI	GATC	3 cut(s)	121, 145, 353
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	118, 142, 350
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 86, 89, 92, 239, 284, 410
BstNI	CCWGG	2 cut(s)	47, 67
BstNSI	RCATGY	2 cut(s)	445, 458
BstSCI	CCNGG	2 cut(s)	45, 65
BstUI	CGCG	3 cut(s)	43, 110, 179
BstV1I	GCAGC	2 cut(s)	226, 367
BstX2I	RGATCY	2 cut(s)	118, 142
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	2 cut(s)	118, 142
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	443
CfoI	GCGC	3 cut(s)	45, 55, 112
Cfr13I	GGNCC	1 cut(s)	250
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	2 cut(s)	49, 116
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	3 cut(s)	405, 442, 455
CviJI	RGCY	9 cut(s)	13, 25, 72, 176, 233, 287, 301, 398, 479
CviKI_1	RGCY	9 cut(s)	13, 25, 72, 176, 233, 287, 301, 398, 479
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	3 cut(s)	120, 144, 352
DpnII	GATC	3 cut(s)	118, 142, 350
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	222, 368
EarI	CTCTTC	2 cut(s)	222, 368
EciI	GGCGGA	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	250
Eco52I	CGGCCG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	45, 65
EcoRV	GATATC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	3 cut(s)	408, 445, 458
FaiI	YATR	6 cut(s)	406, 417, 437, 443, 456, 513
FaqI	GGGAC	2 cut(s)	116, 210
FatI	CATG	3 cut(s)	404, 441, 454
FriOI	GRGCYC	1 cut(s)	74
GlaI	GCGC	3 cut(s)	44, 54, 111
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	2 cut(s)	49, 116
HhaI	GCGC	3 cut(s)	45, 55, 112
Hin1II	CATG	3 cut(s)	408, 445, 458
Hin6I	GCGC	3 cut(s)	43, 53, 110
HinP1I	GCGC	3 cut(s)	43, 53, 110
HinfI	GANTC	2 cut(s)	29, 499
HphI	GGTGA	2 cut(s)	49, 205
Hpy188I	TCNGA	3 cut(s)	147, 297, 355
Hpy188III	TCNNGA	1 cut(s)	262
Hpy99I	CGWCG	2 cut(s)	110, 127
HpyAV	CCTTC	3 cut(s)	241, 335, 339
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	242, 278, 452
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 86, 89, 92, 239, 284, 410
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	408, 445, 458
HspAI	GCGC	3 cut(s)	43, 53, 110
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	118, 142, 350
LpnPI	CCDG	9 cut(s)	32, 52, 59, 79, 101, 185, 264, 266, 282
Lsp1109I	GCAGC	2 cut(s)	226, 367
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	120, 144, 352
MboI	GATC	3 cut(s)	118, 142, 350
MboII	GAAGA	4 cut(s)	199, 239, 385, 473
MflI	RGATCY	2 cut(s)	118, 142
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	3 cut(s)	290, 332, 482
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	43, 133, 223, 304
MspA1I	CMGCKG	2 cut(s)	115, 179
MspR9I	CCNGG	2 cut(s)	47, 67
MvaI	CCWGG	2 cut(s)	47, 67
MvnI	CGCG	3 cut(s)	43, 110, 179
MwoI	GCNNNNNNNGC	7 cut(s)	83, 86, 89, 92, 239, 284, 410
NdeII	GATC	3 cut(s)	118, 142, 350
NlaIII	CATG	3 cut(s)	408, 445, 458
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	2 cut(s)	445, 458
PaeI	GCATGC	1 cut(s)	445
PciI	ACATGT	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	29, 499
Ppu21I	YACGTR	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	250
PscI	ACATGT	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	45, 65
PspGI	CCWGG	2 cut(s)	45, 65
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	118, 142
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	118, 142, 350
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	47, 67
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	7 cut(s)	15, 162, 204, 255, 271, 315, 400
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	250
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	3 cut(s)	290, 332, 482
StyD4I	CCNGG	2 cut(s)	45, 65
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	138, 459, 507
TasI	AATT	3 cut(s)	290, 332, 482
TauI	GCSGC	9 cut(s)	80, 83, 86, 89, 92, 95, 115, 179, 182
TfiI	GAWTC	2 cut(s)	29, 499
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	239, 380
Tsp45I	GTSAC	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	2 cut(s)	290, 482
XceI	RCATGY	2 cut(s)	445, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.