pycom05g05800

Belongs to the CAP family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
7279120 .. 7283089
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g05800.10

Sequence Viewer

Length: 1431 bp
ATGGAGGAGAAGCTGATAGAGAGGCTGGAATCGGCTGTGTTGCGCTTGGAGGCGCTGTCGCTGTCCGGCCGTGGGGGTTCGGCGACGGCCAGGGGTTTCGACGAGGCGCCGCTGGATCCGTCGATTTTGGCTTATGAGGATCTGATTGGGCAGTACCTGGGTAGGGTTTCGGCCGCAGCTGAGAAGATTGGGGGGCAGGTGTTGGACATCACAAAGGTTCTCCAGCAAGCTTTTTCTGCTCAGAAGGACCTGCTTATCCAGGTTAAGCAAACTCAGAAACCTGGCAATGCAGGGTTGGCTGAGTTTCTGAAACCACTGAACGAGGCAATCATGAAGGCAAATTCTTTGACAGAAGGAAGGCGGTCTGATTTTTTTAATCACTTGAAGACTGCTGCTGACAGTCTTTCAGCTTTGGCATGGATTGCATATACAGGGAAAGAATGTGGTATGAGCATGCCTATTGCACATGTCGAAGAAAGTTGGCAGATGGCTGAATTTTATTGCAACAAGATTCTTGTGGAGTATAAAACCAAAGACCCAAATCATTTAGAGTGGGCCAAAGCTCTCAAGGAACTGTATTTGCCTGGTTTAAGAGATTATGTTAAGAGTTTCTATCCGTTGGGTCCAGTTTGGAGTTCAACCAGTAAAGCTGTAACTGCTGCTCCTTCAAAACCAAAAGCTCCTGCCCCAGGTGCCCCTGCTCCTCCACCTCCTCCATCAGCATCCCTCTTTAGTTCTGAAACTTCACAGGCTTCATCATCTCGCCCCAAAGAAGGGATGTCAGCTGTTTTCCAAGAGATTAATTCTGGAAAGCCAGTGACTTCAGGTCTGAGAAAGGTGACGGATGATATGAAGACAAAGAATCGTGCCGATAGAACTGGCGTTGTTGGTACCCATGAGAAGGAAAGTCGTATGAGTTCACCTGCTGTTGCTAAAGTAGGAACACAAAAGTTCGAGCTCCAAATGGGTCGCAAGTGGGTTGTTGAGAATCAGATTGCGAAGAAAGATTTGGTTATTAGTGAATGTGATTCAAAACAGTCTGTATATATTTTTGGGTGCAAAGATTCTGTTCTGCAAATTCAAGGGAAAGTAAACAACATTACCATTGACAAATGCACTAAAATGGGAGTCCTATTTACGGATGTTGTGGCTGCTTGTGAGATCGTAAATTGCAACCGTGTGGAGGTGCAATGCCAGGGCTCGGCTCCTACTGTTTCAGTGGACAACACAGCTGGCTGCCAATTTTATTTGAGCAAAGATGCTCTGGGGGCATCTATAACAACTGCTAAGTCCAGTGAGGTCAATGTGTTGGTACCCAGTTCCGGAGCTGATGGTGATTGGGCGGAGCATGCTTTGCCAGAACAGTTTATTCATGTGTTTAAGGATGGTCGCTTTGAAACGACATCAGTCTCTCACTCGGCAGGAGGGTAA

Protein Analysis

477

Amino Acids

51.36

Weight (kDa)

7.04

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 187, 931
Acc36I ACCTGC 3 cut(s) 187, 258, 931
Acc65I GGTACC 2 cut(s) 890, 1312
AccB1I GGYRCC 4 cut(s) 106, 692, 890, 1312
AccIII TCCGGA 1 cut(s) 1322
AciI CCGC 4 cut(s) 110, 174, 361, 1343
AclWI GGATC 3 cut(s) 110, 123, 147
AcoI YGGCCR 3 cut(s) 67, 87, 171
AcsI RAATTY 3 cut(s) 340, 494, 1077
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 3 cut(s) 155, 892, 1314
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 6 cut(s) 385, 639, 669, 1032, 1082, 1397
AhdI GACNNNNNGTC 1 cut(s) 825
AjnI CCWGG 7 cut(s) 89, 156, 258, 280, 583, 688, 1194
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 1 cut(s) 1414
AlwI GGATC 3 cut(s) 110, 123, 147
AlwNI CAGNNNCTG 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 1322
AoxI GGCC 4 cut(s) 67, 87, 171, 555
ApeKI GCWGC 5 cut(s) 176, 392, 659, 1151, 1236
ApoI RAATTY 3 cut(s) 340, 494, 1077
AseI ATTAAT 1 cut(s) 801
Asp718I GGTACC 2 cut(s) 890, 1312
AspLEI GCGC 3 cut(s) 45, 55, 109
AspS9I GGNCC 3 cut(s) 247, 555, 623
AsuHPI GGTGA 3 cut(s) 850, 912, 1346
AvaII GGWCC 2 cut(s) 247, 623
BaeGI GKGCMC 1 cut(s) 697
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 4 cut(s) 106, 692, 890, 1312
BanII GRGCYC 2 cut(s) 960, 1202
BbsI GAAGAC 2 cut(s) 392, 860
Bbv12I GWGCWC 1 cut(s) 960
BbvI GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
BccI CCATC 4 cut(s) 481, 724, 1325, 1379
BceAI ACGGC 2 cut(s) 54, 102
BciT130I CCWGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
BcoDI GTCTC 1 cut(s) 1414
BfoI RGCGCY 2 cut(s) 56, 110
BfuAI ACCTGC 3 cut(s) 187, 258, 931
BisI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
BlsI GCNGC 7 cut(s) 111, 175, 178, 394, 661, 1153, 1238
Bme1390I CCNGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
Bme18I GGWCC 2 cut(s) 247, 623
BmeRI GACNNNNNGTC 1 cut(s) 825
BmgT120I GGNCC 3 cut(s) 247, 555, 623
BmiI GGNNCC 7 cut(s) 108, 117, 624, 694, 892, 1206, 1314
BmrFI CCNGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
BmrI ACTGGG 1 cut(s) 1311
BmsI GCATC 3 cut(s) 731, 1249, 1280
BmuI ACTGGG 1 cut(s) 1311
BoxI GACNNNNGTC 1 cut(s) 1406
BpiI GAAGAC 2 cut(s) 392, 860
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 5 cut(s) 70, 90, 157, 688, 1195
BsaWI WCCGGW 1 cut(s) 1322
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 646, 676
Bse1I ACTGG 6 cut(s) 626, 642, 815, 883, 1293, 1317
Bse3DI GCAATG 2 cut(s) 292, 1196
BseAI TCCGGA 1 cut(s) 1322
BseBI CCWGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
BseDI CCNNGG 5 cut(s) 70, 90, 157, 688, 1195
BseGI GGATG 5 cut(s) 722, 783, 850, 1147, 1390
BseMI GCAATG 2 cut(s) 292, 1196
BseMII CTCAG 5 cut(s) 171, 254, 287, 291, 821
BseNI ACTGG 6 cut(s) 626, 642, 815, 883, 1293, 1317
BseRI GAGGAG 3 cut(s) 20, 693, 702
BseSI GKGCMC 1 cut(s) 697
BseX3I CGGCCG 2 cut(s) 67, 171
BseXI GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
Bsh1285I CGRYCG 2 cut(s) 70, 174
BshFI GGCC 4 cut(s) 69, 89, 173, 557
BshNI GGYRCC 4 cut(s) 106, 692, 890, 1312
BsiEI CGRYCG 2 cut(s) 70, 174
BsiHKAI GWGCWC 1 cut(s) 960
BsiSI CCGG 2 cut(s) 66, 1323
BsmAI GTCTC 1 cut(s) 1414
BsnI GGCC 4 cut(s) 69, 89, 173, 557
Bsp1286I GDGCHC 3 cut(s) 697, 960, 1202
Bsp13I TCCGGA 1 cut(s) 1322
Bsp143I GATC 3 cut(s) 115, 139, 1161
BspACI CCGC 4 cut(s) 110, 174, 361, 1343
BspANI GGCC 4 cut(s) 69, 89, 173, 557
BspCNI CTCAG 5 cut(s) 172, 253, 286, 292, 822
BspEI TCCGGA 1 cut(s) 1322
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 7 cut(s) 108, 117, 624, 694, 892, 1206, 1314
BspMI ACCTGC 3 cut(s) 187, 258, 931
BspPI GGATC 3 cut(s) 110, 123, 147
BspT107I GGYRCC 4 cut(s) 106, 692, 890, 1312
BsrDI GCAATG 2 cut(s) 292, 1196
BsrI ACTGG 6 cut(s) 626, 642, 815, 883, 1293, 1317
BssECI CCNNGG 5 cut(s) 70, 90, 157, 688, 1195
BssMI GATC 3 cut(s) 115, 139, 1161
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
Bst4CI ACNGT 6 cut(s) 401, 576, 1038, 1178, 1213, 1365
BstACI GRCGYC 1 cut(s) 107
BstAPI GCANNNNNTGC 2 cut(s) 422, 1354
BstC8I GCNNGC 4 cut(s) 228, 455, 1234, 1350
BstDEI CTNAG 6 cut(s) 180, 240, 273, 300, 830, 1287
BstDSI CCRYGG 1 cut(s) 70
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 5 cut(s) 722, 783, 850, 1147, 1390
BstH2I RGCGCY 2 cut(s) 56, 110
BstHHI GCGC 3 cut(s) 45, 55, 109
BstKTI GATC 3 cut(s) 118, 142, 1164
BstMAI GTCTC 1 cut(s) 1414
BstMBI GATC 3 cut(s) 115, 139, 1161
BstMCI CGRYCG 2 cut(s) 70, 174
BstMWI GCNNNNNNNGC 8 cut(s) 236, 296, 422, 656, 692, 1268, 1349, 1354
BstNI CCWGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
BstNSI RCATGY 3 cut(s) 457, 470, 1352
BstPAI GACNNNNGTC 1 cut(s) 1406
BstSCI CCNGG 7 cut(s) 89, 156, 258, 280, 583, 688, 1194
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
BstV2I GAAGAC 2 cut(s) 392, 860
BstX2I RGATCY 2 cut(s) 115, 139
BstYI RGATCY 2 cut(s) 115, 139
BstZI CGGCCG 2 cut(s) 67, 171
BsuRI GGCC 4 cut(s) 69, 89, 173, 557
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 5 cut(s) 722, 783, 850, 1147, 1390
BtsIMutI CAGTG 4 cut(s) 314, 822, 1224, 1300
BveI ACCTGC 3 cut(s) 187, 258, 931
Cac8I GCNNGC 4 cut(s) 228, 455, 1234, 1350
CaiI CAGNNNCTG 1 cut(s) 157
CciI TCATGA 1 cut(s) 330
CfoI GCGC 3 cut(s) 45, 55, 109
Cfr13I GGNCC 3 cut(s) 247, 555, 623
Csp6I GTAC 3 cut(s) 154, 891, 1313
CviAII CATG 7 cut(s) 331, 417, 454, 467, 896, 1349, 1373
CviQI GTAC 3 cut(s) 154, 891, 1313
DdeI CTNAG 6 cut(s) 180, 240, 273, 300, 830, 1287
DinI GGCGCC 1 cut(s) 108
DpnI GATC 3 cut(s) 117, 141, 1163
DpnII GATC 3 cut(s) 115, 139, 1161
DriI GACNNNNNGTC 1 cut(s) 825
EaeI YGGCCR 3 cut(s) 67, 87, 171
EagI CGGCCG 2 cut(s) 67, 171
Eam1105I GACNNNNNGTC 1 cut(s) 825
EciI GGCGGA 1 cut(s) 1358
Ecl136II GAGCTC 1 cut(s) 958
EclXI CGGCCG 2 cut(s) 67, 171
Eco24I GRGCYC 2 cut(s) 960, 1202
Eco47I GGWCC 2 cut(s) 247, 623
Eco52I CGGCCG 2 cut(s) 67, 171
Eco53kI GAGCTC 1 cut(s) 958
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 1 cut(s) 958
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 7 cut(s) 89, 156, 258, 280, 583, 688, 1194
EcoT38I GRGCYC 2 cut(s) 960, 1202
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
FaeI CATG 7 cut(s) 334, 420, 457, 470, 899, 1352, 1376
FatI CATG 7 cut(s) 330, 416, 453, 466, 895, 1348, 1372
Fnu4HI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
FokI GGATG 5 cut(s) 709, 790, 857, 1154, 1397
FriOI GRGCYC 2 cut(s) 960, 1202
Fsp4HI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
GlaI GCGC 3 cut(s) 44, 54, 108
GluI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 2 cut(s) 56, 110
HaeIII GGCC 4 cut(s) 69, 89, 173, 557
HapII CCGG 2 cut(s) 66, 1323
HhaI GCGC 3 cut(s) 45, 55, 109
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 7 cut(s) 334, 420, 457, 470, 899, 1352, 1376
Hin6I GCGC 3 cut(s) 43, 53, 107
HinP1I GCGC 3 cut(s) 43, 53, 107
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 7 cut(s) 29, 511, 862, 988, 1028, 1064, 1128
HpaII CCGG 2 cut(s) 66, 1323
HphI GGTGA 3 cut(s) 850, 912, 1346
Hpy166II GTNNAC 3 cut(s) 920, 1093, 1222
Hpy188I TCNGA 8 cut(s) 144, 243, 276, 309, 367, 739, 831, 993
Hpy188III TCNNGA 3 cut(s) 331, 807, 1323
Hpy8I GTNNAC 3 cut(s) 920, 1093, 1222
Hpy99I CGWCG 3 cut(s) 88, 104, 124
HpyAV CCTTC 7 cut(s) 238, 328, 347, 351, 675, 767, 895
HpyCH4III ACNGT 6 cut(s) 401, 576, 1038, 1178, 1213, 1365
HpyCH4V TGCA 9 cut(s) 290, 425, 464, 504, 1059, 1075, 1116, 1173, 1189
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 296, 422, 656, 692, 1268, 1349, 1354
HpyF3I CTNAG 6 cut(s) 180, 240, 273, 300, 830, 1287
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 7 cut(s) 334, 420, 457, 470, 899, 1352, 1376
HspAI GCGC 3 cut(s) 43, 53, 107
KasI GGCGCC 1 cut(s) 106
Kpn2I TCCGGA 1 cut(s) 1322
KpnI GGTACC 2 cut(s) 894, 1316
Kzo9I GATC 3 cut(s) 115, 139, 1161
LmnI GCTCC 7 cut(s) 667, 685, 706, 963, 1210, 1325, 1345
Lsp1109I GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
LweI GCATC 3 cut(s) 731, 1249, 1280
MaeIII GTNAC 3 cut(s) 652, 817, 838
MalI GATC 3 cut(s) 117, 141, 1163
MboI GATC 3 cut(s) 115, 139, 1161
MboII GAAGA 5 cut(s) 196, 397, 485, 865, 1012
MflI RGATCY 2 cut(s) 115, 139
MhlI GDGCHC 3 cut(s) 697, 960, 1202
MluCI AATT 6 cut(s) 340, 494, 802, 1077, 1168, 1241
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 1137
MmeI TCCRAC 1 cut(s) 183
MroI TCCGGA 1 cut(s) 1322
MseI TTAA 6 cut(s) 264, 375, 590, 603, 801, 1380
MslI CAYNNNNRTG 1 cut(s) 1121
MspA1I CMGCKG 4 cut(s) 112, 179, 785, 1232
MspI CCGG 2 cut(s) 66, 1323
MspR9I CCNGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
MvaI CCWGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
MwoI GCNNNNNNNGC 8 cut(s) 236, 296, 422, 656, 692, 1268, 1349, 1354
NarI GGCGCC 1 cut(s) 107
NdeII GATC 3 cut(s) 115, 139, 1161
NlaIII CATG 7 cut(s) 334, 420, 457, 470, 899, 1352, 1376
NlaIV GGNNCC 7 cut(s) 108, 117, 624, 694, 892, 1206, 1314
NmeAIII GCCGAG 2 cut(s) 1181, 1397
NmuCI GTSAC 2 cut(s) 817, 838
NspI RCATGY 3 cut(s) 457, 470, 1352
PaeI GCATGC 2 cut(s) 457, 1352
PagI TCATGA 1 cut(s) 330
PaqCI CACCTGC 2 cut(s) 187, 931
PciI ACATGT 1 cut(s) 466
PfeI GAWTC 6 cut(s) 29, 511, 862, 988, 1028, 1064
PkrI GCNGC 7 cut(s) 111, 175, 178, 394, 661, 1153, 1238
PleI GAGTC 1 cut(s) 1136
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 1136
PpuMI RGGWCCY 1 cut(s) 247
PscI ACATGT 1 cut(s) 466
PshAI GACNNNNGTC 1 cut(s) 1406
PshBI ATTAAT 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 960
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 7 cut(s) 89, 156, 258, 280, 583, 688, 1194
PspGI CCWGG 7 cut(s) 89, 156, 258, 280, 583, 688, 1194
PspN4I GGNNCC 7 cut(s) 108, 117, 624, 694, 892, 1206, 1314
PspPI GGNCC 3 cut(s) 247, 555, 623
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 115, 139
PvuII CAGCTG 3 cut(s) 179, 785, 1232
RsaI GTAC 3 cut(s) 155, 892, 1314
RsaNI GTAC 3 cut(s) 154, 891, 1313
RseI CAYNNNNRTG 1 cut(s) 1121
SacI GAGCTC 1 cut(s) 960
SaqAI TTAA 6 cut(s) 264, 375, 590, 603, 801, 1380
SatI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
Sau3AI GATC 3 cut(s) 115, 139, 1161
Sau96I GGNCC 3 cut(s) 247, 555, 623
SchI GAGTC 1 cut(s) 1137
ScrFI CCNGG 7 cut(s) 91, 158, 260, 282, 585, 690, 1196
SduI GDGCHC 3 cut(s) 697, 960, 1202
SfaNI GCATC 3 cut(s) 731, 1249, 1280
SfoI GGCGCC 1 cut(s) 108
SinI GGWCC 2 cut(s) 247, 623
SmiMI CAYNNNNRTG 1 cut(s) 1121
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 2 cut(s) 457, 1352
Sse9I AATT 6 cut(s) 340, 494, 802, 1077, 1168, 1241
SsiI CCGC 4 cut(s) 110, 174, 361, 1343
SspDI GGCGCC 1 cut(s) 106
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 7 cut(s) 89, 156, 258, 280, 583, 688, 1194
TaaI ACNGT 6 cut(s) 401, 576, 1038, 1178, 1213, 1365
TaqI TCGA 4 cut(s) 99, 122, 471, 954
TasI AATT 6 cut(s) 340, 494, 802, 1077, 1168, 1241
TauI GCSGC 2 cut(s) 112, 176
TfiI GAWTC 6 cut(s) 29, 511, 862, 988, 1028, 1064
Tru1I TTAA 6 cut(s) 264, 375, 590, 603, 801, 1380
Tru9I TTAA 6 cut(s) 264, 375, 590, 603, 801, 1380
TscAI CASTG 4 cut(s) 321, 822, 1224, 1300
TseFI GTSAC 2 cut(s) 817, 838
TseI GCWGC 5 cut(s) 176, 392, 659, 1151, 1236
Tsp45I GTSAC 2 cut(s) 817, 838
TspDTI ATGAA 4 cut(s) 347, 744, 866, 1361
TspGWI ACGGA 4 cut(s) 108, 606, 857, 1154
TspRI CASTG 4 cut(s) 321, 822, 1224, 1300
VpaK11BI GGWCC 2 cut(s) 247, 623
VspI ATTAAT 1 cut(s) 801
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 3 cut(s) 340, 494, 1077
XceI RCATGY 3 cut(s) 457, 470, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.