Rh6AG129400

Belongs to the CAP family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
19491173 .. 19495687
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG129400.1

Sequence Viewer

Length: 1425 bp
ATGGAGGAGAAGCTGATACAGCGGCTTGAATCGGCGGTGACGCGCCTGGAGGCGCTGTCGATGTCCGGGGGCTCTGCCGCGGCGGCGAGTGGGGACGACGCGCCGCTGGATCCGTCGGTTCTGGCGTTCGAGGATCTGATTGGGCAGTACGTGGGTAGGGTTTCGGCCGCGGCGGAGAAGATTGGGGGACAGGTGTTGGATATCACCAAGATTGTGGCGGAGGCTTTTGCTGCCCAGAAGGACCTGATTATCAAGGTCAAGCAACACAAGAAACCTGACAATGCAGGGTTGGCTGAATTTCTGAAGCCACTCAACGAGGTCATTACAAAGGCAAATAAATTGACAGAAGGAAGGCGATCTGATTTTTTCAATCACTTGAAGAGTGCTGCTGACAGTCTCTCAGCTTTAGCATGGATTGCCTATACAGGGAAAGAATGTGGTATGAGCATGCCTATTGCACATGTGGAAGAAAGTTGGCAGATGGCTGAATTTTACAACAACAAGATTCTTGTCGAGTATAAGACCAAAGACCCAAATCATGTAGAGTGGGCCAAAGCTATGAAGGAACTGTATATGCCTGGTTTGAGAGAATATGTTAAGAGTTTCTATCCGTTGGGTCCAGTCTGGAGTCCAACCGGCACAGCTGTTACTGCTGCTCCATCAAAACCAAAAGCTCCGGCACCAGGTGCACCTGCTCCTCCACCTCCTCCATCGGCTTCACTCTTCAGTTCTGAAACTTCTAAGGCTTCGTCATCGCGCCCGAAAGAAGGGATGGCAGCTGTTTTCCAAGAGATCAATTCTGGCAAGCCTGTGACTACAGGTCTGAGAAAGGTCACAGATGATATGAAGACAAAGAATCGTGCTGACAGAACTGGGGTTGTTGGTACCCAGGAGAAAGAAAGTCGTACTAGTGCACCTGCTGTTTCTAAAGTAGGACCTCCAAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGCTGTTGAGAATCAGATTGGAAAGAAGGATTTGGTGATTAGTGAATGTGATCCAAAACAGTCAGTATATATTTTTGGATGCAAAGACTCTGTTTTGCAAATTCAAGGGAAAGTGAACAACATTACAATTGACAAATGCACTAAGATGGGAGTTGTATTTCAGGATGTTGTGGCTGCTTTTGAGATCGTCAATTGCAACCGTGTTGAGGTGCAATGTCAGGGCTCCGCCCCAACAGTTTCAATTGACAACACAGCTGGCTGCCAATTTTATTTAAGCAAGGATGCTCTATCTGCATCTATAACAACGGCTAAATCAAGTGAAGTGAATATAATGGTACCTGGTGCTGAACCTGATGGCGATTGGGGTGAGCACGCATTGCCAGAACAGTTTATTCATGTGTATAAGGATGGTCGCTTTGAAACAACTCCAGTCTCTCACTCAGCAGGAGGGTAA

Protein Analysis

474

Amino Acids

51.05

Weight (kDa)

6.69

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP_N-CM PF01213 3 - 32 1.5e-07 CAP N-terminal conserved motif
CAP_N PF21938 43 - 204 2.7e-35 CAP, N-terminal domain
CAP_C PF08603 313 - 470 8.9e-62 Adenylate cyclase associated (CAP) C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 700, 925
Acc36I ACCTGC 2 cut(s) 700, 925
Acc65I GGTACC 2 cut(s) 884, 1306
AccB1I GGYRCC 3 cut(s) 679, 884, 1306
AccII CGCG 5 cut(s) 43, 80, 101, 170, 757
AclWI GGATC 4 cut(s) 104, 117, 141, 1016
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 3 cut(s) 296, 488, 1071
AcuI CTGAAG 2 cut(s) 323, 709
AdeI CACNNNGTG 1 cut(s) 686
AfaI GTAC 4 cut(s) 149, 886, 907, 1308
AfiI CCNNNNNNNGG 4 cut(s) 426, 683, 767, 1177
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 7 cut(s) 29, 370, 379, 956, 1076, 1212, 1391
AhdI GACNNNNNGTC 1 cut(s) 819
AhlI ACTAGT 1 cut(s) 908
AjnI CCWGG 5 cut(s) 45, 577, 682, 888, 1309
AluBI AGCT 8 cut(s) 13, 404, 557, 644, 674, 779, 952, 1226
AluI AGCT 8 cut(s) 13, 404, 557, 644, 674, 779, 952, 1226
Alw21I GWGCWC 3 cut(s) 691, 916, 1344
Alw26I GTCTC 2 cut(s) 401, 1408
Alw44I GTGCAC 2 cut(s) 687, 912
AlwI GGATC 4 cut(s) 104, 117, 141, 1016
AoxI GGCC 2 cut(s) 165, 549
ApaLI GTGCAC 2 cut(s) 687, 912
ApeKI GCWGC 6 cut(s) 230, 386, 653, 776, 1145, 1230
ApoI RAATTY 3 cut(s) 296, 488, 1071
Asp718I GGTACC 2 cut(s) 884, 1306
AspLEI GCGC 4 cut(s) 45, 55, 103, 759
AspS9I GGNCC 4 cut(s) 241, 549, 617, 935
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 4 cut(s) 49, 196, 1018, 1349
AvaII GGWCC 3 cut(s) 241, 617, 935
BaeGI GKGCMC 2 cut(s) 691, 916
BamHI GGATCC 1 cut(s) 109
BanI GGYRCC 3 cut(s) 679, 884, 1306
BanII GRGCYC 2 cut(s) 74, 1196
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 3 cut(s) 691, 916, 1344
BbvI GCAGC 6 cut(s) 217, 373, 640, 788, 1132, 1217
BccI CCATC 7 cut(s) 475, 667, 718, 766, 1111, 1319, 1373
BceAI ACGGC 1 cut(s) 1293
BciT130I CCWGG 5 cut(s) 47, 579, 684, 890, 1311
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 401, 1408
BcuI ACTAGT 1 cut(s) 908
BfaI CTAG 1 cut(s) 909
BfmI CTRYAG 1 cut(s) 816
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 2 cut(s) 700, 925
BglI GCCNNNNNGGC 1 cut(s) 83
Bme1390I CCNGG 6 cut(s) 47, 67, 579, 684, 890, 1311
Bme18I GGWCC 3 cut(s) 241, 617, 935
BmeRI GACNNNNNGTC 1 cut(s) 819
BmgT120I GGNCC 4 cut(s) 241, 549, 617, 935
BmiI GGNNCC 6 cut(s) 111, 618, 681, 886, 1195, 1308
BmrFI CCNGG 6 cut(s) 47, 67, 579, 684, 890, 1311
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 1040, 1243, 1274
BmuI ACTGGG 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 854
BpmI CTGGAG 3 cut(s) 68, 646, 1383
BpuMI CCSGG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 4 cut(s) 66, 78, 168, 888
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 640, 670
Bsc4I CCNNNNNNNGG 4 cut(s) 426, 683, 767, 1177
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 3 cut(s) 620, 877, 1400
Bse3DI GCAATG 2 cut(s) 1190, 1346
BseBI CCWGG 5 cut(s) 47, 579, 684, 890, 1311
BseDI CCNNGG 4 cut(s) 66, 78, 168, 888
BseGI GGATG 5 cut(s) 777, 1055, 1141, 1258, 1384
BseLI CCNNNNNNNGG 4 cut(s) 426, 683, 767, 1177
BseMI GCAATG 2 cut(s) 1190, 1346
BseMII CTCAG 3 cut(s) 414, 815, 1425
BseNI ACTGG 3 cut(s) 620, 877, 1400
BseRI GAGGAG 3 cut(s) 20, 687, 696
BseSI GKGCMC 2 cut(s) 691, 916
BseX3I CGGCCG 1 cut(s) 165
BseXI GCAGC 6 cut(s) 217, 373, 640, 788, 1132, 1217
Bsh1236I CGCG 5 cut(s) 43, 80, 101, 170, 757
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 167, 551
BshNI GGYRCC 3 cut(s) 679, 884, 1306
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 3 cut(s) 691, 916, 1344
BsiSI CCGG 3 cut(s) 66, 636, 677
BslFI GGGAC 2 cut(s) 107, 201
BslI CCNNNNNNNGG 4 cut(s) 426, 683, 767, 1177
BsmAI GTCTC 2 cut(s) 401, 1408
BsmFI GGGAC 2 cut(s) 107, 201
BsnI GGCC 2 cut(s) 167, 551
Bsp1286I GDGCHC 5 cut(s) 74, 691, 916, 1196, 1344
Bsp143I GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
BspANI GGCC 2 cut(s) 167, 551
BspCNI CTCAG 3 cut(s) 413, 816, 1424
BspFNI CGCG 5 cut(s) 43, 80, 101, 170, 757
BspLI GGNNCC 6 cut(s) 111, 618, 681, 886, 1195, 1308
BspMI ACCTGC 2 cut(s) 700, 925
BspPI GGATC 4 cut(s) 104, 117, 141, 1016
BspT107I GGYRCC 3 cut(s) 679, 884, 1306
BsrDI GCAATG 2 cut(s) 1190, 1346
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 3 cut(s) 620, 877, 1400
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 4 cut(s) 66, 78, 168, 888
BssMI GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
Bst2UI CCWGG 5 cut(s) 47, 579, 684, 890, 1311
Bst4CI ACNGT 6 cut(s) 395, 570, 1032, 1172, 1207, 1359
Bst6I CTCTTC 2 cut(s) 374, 728
BstAPI GCANNNNNTGC 3 cut(s) 416, 686, 1348
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 4 cut(s) 449, 806, 1228, 1344
BstDEI CTNAG 5 cut(s) 400, 741, 824, 1113, 1411
BstDSI CCRYGG 2 cut(s) 78, 168
BstF5I GGATG 5 cut(s) 777, 1055, 1141, 1258, 1384
BstFNI CGCG 5 cut(s) 43, 80, 101, 170, 757
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 4 cut(s) 45, 55, 103, 759
BstKTI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
BstMAI GTCTC 2 cut(s) 401, 1408
BstMBI GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 9 cut(s) 19, 83, 230, 290, 416, 650, 686, 1262, 1348
BstNI CCWGG 5 cut(s) 47, 579, 684, 890, 1311
BstNSI RCATGY 2 cut(s) 451, 464
BstSCI CCNGG 6 cut(s) 45, 65, 577, 682, 888, 1309
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 2 cut(s) 691, 916
BstUI CGCG 5 cut(s) 43, 80, 101, 170, 757
BstV1I GCAGC 6 cut(s) 217, 373, 640, 788, 1132, 1217
BstV2I GAAGAC 1 cut(s) 854
BstX2I RGATCY 2 cut(s) 109, 133
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 2 cut(s) 109, 133
BstZI CGGCCG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 167, 551
BtgI CCRYGG 2 cut(s) 78, 168
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 5 cut(s) 777, 1055, 1141, 1258, 1384
BveI ACCTGC 2 cut(s) 700, 925
Cac8I GCNNGC 4 cut(s) 449, 806, 1228, 1344
CfoI GCGC 4 cut(s) 45, 55, 103, 759
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 4 cut(s) 241, 549, 617, 935
Cfr42I CCGCGG 2 cut(s) 81, 171
CseI GACGC 2 cut(s) 49, 107
CsiI ACCWGGT 2 cut(s) 682, 1309
Csp6I GTAC 4 cut(s) 148, 885, 906, 1307
CviAII CATG 5 cut(s) 411, 448, 461, 539, 1367
CviQI GTAC 4 cut(s) 148, 885, 906, 1307
DdeI CTNAG 5 cut(s) 400, 741, 824, 1113, 1411
DpnI GATC 6 cut(s) 111, 135, 358, 794, 1023, 1157
DpnII GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
DraIII CACNNNGTG 1 cut(s) 686
DriI GACNNNNNGTC 1 cut(s) 819
EaeI YGGCCR 1 cut(s) 165
EagI CGGCCG 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 374, 728
Eam1105I GACNNNNNGTC 1 cut(s) 819
EarI CTCTTC 2 cut(s) 374, 728
EciI GGCGGA 3 cut(s) 188, 233, 1186
EclXI CGGCCG 1 cut(s) 165
Eco24I GRGCYC 2 cut(s) 74, 1196
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 3 cut(s) 241, 617, 935
Eco52I CGGCCG 1 cut(s) 165
Eco57I CTGAAG 2 cut(s) 323, 709
EcoO109I RGGNCCY 2 cut(s) 241, 935
EcoRII CCWGG 5 cut(s) 45, 577, 682, 888, 1309
EcoRV GATATC 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 74, 1196
FaeI CATG 5 cut(s) 414, 451, 464, 542, 1370
FaqI GGGAC 2 cut(s) 107, 201
FatI CATG 5 cut(s) 410, 447, 460, 538, 1366
FokI GGATG 5 cut(s) 784, 1062, 1148, 1265, 1391
FriOI GRGCYC 2 cut(s) 74, 1196
FspBI CTAG 1 cut(s) 909
GlaI GCGC 4 cut(s) 44, 54, 102, 758
GsuI CTGGAG 3 cut(s) 68, 646, 1383
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 167, 551
HapII CCGG 3 cut(s) 66, 636, 677
HgaI GACGC 2 cut(s) 49, 107
HhaI GCGC 4 cut(s) 45, 55, 103, 759
Hin1II CATG 5 cut(s) 414, 451, 464, 542, 1370
Hin6I GCGC 4 cut(s) 43, 53, 101, 757
HinP1I GCGC 4 cut(s) 43, 53, 101, 757
HinfI GANTC 6 cut(s) 29, 505, 628, 856, 982, 1058
HpaII CCGG 3 cut(s) 66, 636, 677
HphI GGTGA 4 cut(s) 49, 196, 1018, 1349
Hpy166II GTNNAC 3 cut(s) 689, 914, 1087
Hpy188I TCNGA 7 cut(s) 138, 303, 361, 733, 825, 966, 987
Hpy188III TCNNGA 2 cut(s) 625, 1133
Hpy8I GTNNAC 3 cut(s) 689, 914, 1087
Hpy99I CGWCG 2 cut(s) 101, 118
HpyAV CCTTC 6 cut(s) 232, 341, 345, 556, 761, 991
HpyCH4III ACNGT 6 cut(s) 395, 570, 1032, 1172, 1207, 1359
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 83, 230, 290, 416, 650, 686, 1262, 1348
HpyF3I CTNAG 5 cut(s) 400, 741, 824, 1113, 1411
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 5 cut(s) 414, 451, 464, 542, 1370
HspAI GCGC 4 cut(s) 43, 53, 101, 757
KpnI GGTACC 2 cut(s) 888, 1310
KspI CCGCGG 2 cut(s) 81, 171
Kzo9I GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
LmnI GCTCC 4 cut(s) 661, 679, 700, 1199
Lsp1109I GCAGC 6 cut(s) 217, 373, 640, 788, 1132, 1217
LweI GCATC 3 cut(s) 1040, 1243, 1274
MabI ACCWGGT 2 cut(s) 682, 1309
MaeI CTAG 1 cut(s) 909
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 37, 646, 811, 832
MalI GATC 6 cut(s) 111, 135, 358, 794, 1023, 1157
MboI GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
MboII GAAGA 5 cut(s) 190, 391, 479, 715, 859
MfeI CAATTG 3 cut(s) 1098, 1162, 1212
MflI RGATCY 2 cut(s) 109, 133
MhlI GDGCHC 5 cut(s) 74, 691, 916, 1196, 1344
MluCI AATT 9 cut(s) 296, 338, 488, 796, 1071, 1098, 1162, 1212, 1235
MlyI GAGTC 2 cut(s) 637, 1052
MmeI TCCRAC 3 cut(s) 177, 656, 944
MseI TTAA 2 cut(s) 597, 1244
MslI CAYNNNNRTG 1 cut(s) 1115
MspA1I CMGCKG 7 cut(s) 22, 80, 106, 170, 644, 779, 1226
MspI CCGG 3 cut(s) 66, 636, 677
MspR9I CCNGG 6 cut(s) 47, 67, 579, 684, 890, 1311
MunI CAATTG 3 cut(s) 1098, 1162, 1212
MvaI CCWGG 5 cut(s) 47, 579, 684, 890, 1311
MvnI CGCG 5 cut(s) 43, 80, 101, 170, 757
MwoI GCNNNNNNNGC 9 cut(s) 19, 83, 230, 290, 416, 650, 686, 1262, 1348
NciI CCSGG 1 cut(s) 67
NdeII GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
NlaIII CATG 5 cut(s) 414, 451, 464, 542, 1370
NlaIV GGNNCC 6 cut(s) 111, 618, 681, 886, 1195, 1308
NmuCI GTSAC 3 cut(s) 37, 811, 832
NspI RCATGY 2 cut(s) 451, 464
PaeI GCATGC 1 cut(s) 451
PaqCI CACCTGC 2 cut(s) 700, 925
PciI ACATGT 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 4 cut(s) 29, 505, 856, 982
PleI GAGTC 2 cut(s) 636, 1052
PpsI GAGTC 2 cut(s) 636, 1052
Ppu21I YACGTR 1 cut(s) 151
PpuMI RGGWCCY 2 cut(s) 241, 935
PscI ACATGT 1 cut(s) 460
Psp5II RGGWCCY 2 cut(s) 241, 935
Psp6I CCWGG 5 cut(s) 45, 577, 682, 888, 1309
PspGI CCWGG 5 cut(s) 45, 577, 682, 888, 1309
PspN4I GGNNCC 6 cut(s) 111, 618, 681, 886, 1195, 1308
PspPI GGNCC 4 cut(s) 241, 549, 617, 935
PspPPI RGGWCCY 2 cut(s) 241, 935
PsuI RGATCY 2 cut(s) 109, 133
PvuII CAGCTG 3 cut(s) 644, 779, 1226
RsaI GTAC 4 cut(s) 149, 886, 907, 1308
RsaNI GTAC 4 cut(s) 148, 885, 906, 1307
RseI CAYNNNNRTG 1 cut(s) 1115
SacII CCGCGG 2 cut(s) 81, 171
SaqAI TTAA 2 cut(s) 597, 1244
Sau3AI GATC 6 cut(s) 109, 133, 356, 792, 1021, 1155
Sau96I GGNCC 4 cut(s) 241, 549, 617, 935
SchI GAGTC 2 cut(s) 637, 1052
ScrFI CCNGG 6 cut(s) 47, 67, 579, 684, 890, 1311
SduI GDGCHC 5 cut(s) 74, 691, 916, 1196, 1344
SexAI ACCWGGT 2 cut(s) 682, 1309
SfaNI GCATC 3 cut(s) 1040, 1243, 1274
SfcI CTRYAG 1 cut(s) 816
Sfr303I CCGCGG 2 cut(s) 81, 171
SgrBI CCGCGG 2 cut(s) 81, 171
SinI GGWCC 3 cut(s) 241, 617, 935
SmiMI CAYNNNNRTG 1 cut(s) 1115
SpeI ACTAGT 1 cut(s) 908
SphI GCATGC 1 cut(s) 451
Sse9I AATT 9 cut(s) 296, 338, 488, 796, 1071, 1098, 1162, 1212, 1235
SspMI CTAG 1 cut(s) 909
StyD4I CCNGG 6 cut(s) 45, 65, 577, 682, 888, 1309
TaaI ACNGT 6 cut(s) 395, 570, 1032, 1172, 1207, 1359
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 59, 129, 513
TasI AATT 9 cut(s) 296, 338, 488, 796, 1071, 1098, 1162, 1212, 1235
TauI GCSGC 7 cut(s) 25, 80, 83, 86, 106, 170, 173
TfiI GAWTC 4 cut(s) 29, 505, 856, 982
Tru1I TTAA 2 cut(s) 597, 1244
Tru9I TTAA 2 cut(s) 597, 1244
TseFI GTSAC 3 cut(s) 37, 811, 832
TseI GCWGC 6 cut(s) 230, 386, 653, 776, 1145, 1230
Tsp45I GTSAC 3 cut(s) 37, 811, 832
TspDTI ATGAA 3 cut(s) 575, 860, 1355
TspGWI ACGGA 2 cut(s) 102, 600
VneI GTGCAC 2 cut(s) 687, 912
VpaK11BI GGWCC 3 cut(s) 241, 617, 935
XapI RAATTY 3 cut(s) 296, 488, 1071
XceI RCATGY 2 cut(s) 451, 464
XspI CTAG 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.