Rh6DG111200

Belongs to the CAP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007202
Physical Location & Seq
Reverse (-)
14606976 .. 14611584
4609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG111200.1

Sequence Viewer

Length: 1029 bp
ATGAATACACATGCGCATGTCCCAGAATCACATTGTCTAATTGCACAAGCTGTTTTCACCAACTTGTTGATCACTGATGCTTACATGAGCAAAATTTCCAGTAAGAAGGTGCTGACTCTGTGGCATGAAAATATACAGATTCTTGTCGAGTATAAGACCAAAGACCCAAATCATGTAGAGTGGGCCAAAGCTATGAAGGAACTATATATGCCTGGTTTGAGAGAATATGTTAAGAGTTTCTATCCGTTGGGTCCAGTCTGGAGTCCAACCGGCACAGCTGTTACTGCTGCTCCATCAAAACCAAAAGCTCCGGCACCAGGTGCACCTGCTCCTCCACCTCCTCCATCGGCTTCACTCTTCAGTTCTGAAACTTCTAAGGCTTCGTCATCACGCCCGAAAGAAGGGATGGCAGCTGTTTTCCAAGAGATCAATTCTGGCAAGCCTGTGACTACAGGTCTGAGAAAGGTCACAGATGATATGAAGACAAAGAATCGTGCTGACAGAACTGGGGTTGTTGGTACCCAGGAGAAAGAAAGTCGTACTAGTGCACCTGCTGTTTCTAAAGTAGGACCTCCGAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGCTGTTGAGAATCAGATTGGAAAGAAGGATTTGGTGATTAGTGAATGTGATCCAAAACAGTCAGTATATATTTTTGGATGCAAAGACTCTGTTTTGCAAATTCAAGGGAAAGTGAACAACATTACAATTGACAAATGCACTAAGATGGGAGTTGTATTTCAGGATGTTGTGGCTGCTTTTGAGATCGTCAATTGCAACCGTGTTGAGGTGCAATGTCAGGGCTCCGCCCCAACAGTTTCAATTGACAACACAGCTGGCTGCCAATTTTATTTAAGCAAGGATGCTCTATCTGCATCTATAACAACGGCTAAATCAAGTGAAGTGAATATAATGGTACCTGGTGCTGAACCTGATGGTGATTGGGTATGTTTATTTGTTCTTTTATTAAGTTTGTGTTTAGCTTTTGCGAATTTTTTTCCTTGA

Protein Analysis

342

Amino Acids

37.09

Weight (kDa)

8.61

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP_C PF08603 191 - 324 2.9e-52 Adenylate cyclase associated (CAP) C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 334, 559
Acc16I TGCGCA 1 cut(s) 15
Acc36I ACCTGC 2 cut(s) 334, 559
Acc65I GGTACC 2 cut(s) 518, 940
AccB1I GGYRCC 3 cut(s) 313, 518, 940
AciI CCGC 1 cut(s) 831
AclWI GGATC 1 cut(s) 650
AcsI RAATTY 3 cut(s) 93, 705, 1015
AcuI CTGAAG 1 cut(s) 343
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 3 cut(s) 520, 541, 942
AfiI CCNNNNNNNGG 3 cut(s) 317, 401, 811
AgsI TTSAA 3 cut(s) 590, 710, 846
AhdI GACNNNNNGTC 1 cut(s) 453
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 4 cut(s) 211, 316, 522, 943
AluBI AGCT 8 cut(s) 50, 191, 278, 308, 413, 586, 860, 1007
AluI AGCT 8 cut(s) 50, 191, 278, 308, 413, 586, 860, 1007
Alw21I GWGCWC 2 cut(s) 325, 550
Alw44I GTGCAC 2 cut(s) 321, 546
AlwI GGATC 1 cut(s) 650
AoxI GGCC 1 cut(s) 183
ApaLI GTGCAC 2 cut(s) 321, 546
ApeKI GCWGC 4 cut(s) 287, 410, 779, 864
ApoI RAATTY 3 cut(s) 93, 705, 1015
Asp718I GGTACC 2 cut(s) 518, 940
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 3 cut(s) 183, 251, 569
AsuHPI GGTGA 3 cut(s) 49, 652, 974
AvaII GGWCC 2 cut(s) 251, 569
BaeGI GKGCMC 2 cut(s) 325, 550
BanI GGYRCC 3 cut(s) 313, 518, 940
BanII GRGCYC 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 325, 550
BbvI GCAGC 4 cut(s) 274, 422, 766, 851
BccI CCATC 5 cut(s) 301, 352, 400, 745, 953
BceAI ACGGC 1 cut(s) 927
BciT130I CCWGG 4 cut(s) 213, 318, 524, 945
BclI TGATCA 1 cut(s) 69
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 450
BfuAI ACCTGC 2 cut(s) 334, 559
BisI GCNGC 4 cut(s) 288, 411, 780, 865
BlsI GCNGC 4 cut(s) 289, 412, 781, 866
Bme1390I CCNGG 4 cut(s) 213, 318, 524, 945
Bme18I GGWCC 2 cut(s) 251, 569
BmeRI GACNNNNNGTC 1 cut(s) 453
BmgT120I GGNCC 3 cut(s) 183, 251, 569
BmiI GGNNCC 5 cut(s) 252, 315, 520, 829, 942
BmrFI CCNGG 4 cut(s) 213, 318, 524, 945
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 4 cut(s) 67, 674, 877, 908
BmuI ACTGGG 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 401, 811
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 99, 254, 511
Bse3DI GCAATG 1 cut(s) 824
BseBI CCWGG 4 cut(s) 213, 318, 524, 945
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 4 cut(s) 411, 689, 775, 892
BseLI CCNNNNNNNGG 3 cut(s) 317, 401, 811
BseMI GCAATG 1 cut(s) 824
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 3 cut(s) 99, 254, 511
BseRI GAGGAG 2 cut(s) 321, 330
BseSI GKGCMC 2 cut(s) 325, 550
BseXI GCAGC 4 cut(s) 274, 422, 766, 851
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 3 cut(s) 313, 518, 940
BsiHKAI GWGCWC 2 cut(s) 325, 550
BsiSI CCGG 2 cut(s) 270, 311
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 3 cut(s) 317, 401, 811
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 3 cut(s) 325, 550, 830
Bsp143I GATC 4 cut(s) 69, 426, 655, 789
BspACI CCGC 1 cut(s) 831
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 5 cut(s) 252, 315, 520, 829, 942
BspMI ACCTGC 2 cut(s) 334, 559
BspPI GGATC 1 cut(s) 650
BspT107I GGYRCC 3 cut(s) 313, 518, 940
BsrDI GCAATG 1 cut(s) 824
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 3 cut(s) 99, 254, 511
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 4 cut(s) 69, 426, 655, 789
Bst2UI CCWGG 4 cut(s) 213, 318, 524, 945
Bst4CI ACNGT 3 cut(s) 666, 806, 841
Bst6I CTCTTC 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 440, 862
BstDEI CTNAG 3 cut(s) 375, 458, 747
BstF5I GGATG 4 cut(s) 411, 689, 775, 892
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 4 cut(s) 72, 429, 658, 792
BstMBI GATC 4 cut(s) 69, 426, 655, 789
BstMWI GCNNNNNNNGC 3 cut(s) 284, 320, 896
BstNI CCWGG 4 cut(s) 213, 318, 524, 945
BstNSI RCATGY 2 cut(s) 14, 20
BstSCI CCNGG 4 cut(s) 211, 316, 522, 943
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 2 cut(s) 325, 550
BstV1I GCAGC 4 cut(s) 274, 422, 766, 851
BstV2I GAAGAC 1 cut(s) 488
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 4 cut(s) 411, 689, 775, 892
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 2 cut(s) 334, 559
Cac8I GCNNGC 2 cut(s) 440, 862
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 183, 251, 569
CsiI ACCWGGT 2 cut(s) 316, 943
Csp6I GTAC 3 cut(s) 519, 540, 941
CviAII CATG 5 cut(s) 11, 17, 85, 125, 173
CviQI GTAC 3 cut(s) 519, 540, 941
DdeI CTNAG 3 cut(s) 375, 458, 747
DpnI GATC 4 cut(s) 71, 428, 657, 791
DpnII GATC 4 cut(s) 69, 426, 655, 789
DraIII CACNNNGTG 1 cut(s) 320
DriI GACNNNNNGTC 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 362
Eam1105I GACNNNNNGTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 251, 569
Eco57I CTGAAG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 4 cut(s) 211, 316, 522, 943
EcoT38I GRGCYC 1 cut(s) 830
FaeI CATG 5 cut(s) 14, 20, 88, 128, 176
FaqI GGGAC 1 cut(s) 5
FatI CATG 5 cut(s) 10, 16, 84, 124, 172
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 288, 411, 780, 865
FokI GGATG 4 cut(s) 418, 696, 782, 899
FriOI GRGCYC 1 cut(s) 830
Fsp4HI GCNGC 4 cut(s) 288, 411, 780, 865
FspAI RTGCGCAY 1 cut(s) 15
FspBI CTAG 1 cut(s) 543
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 1 cut(s) 15
GluI GCNGC 4 cut(s) 288, 411, 780, 865
GsuI CTGGAG 1 cut(s) 280
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 270, 311
HhaI GCGC 1 cut(s) 16
Hin1II CATG 5 cut(s) 14, 20, 88, 128, 176
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 7 cut(s) 26, 115, 139, 262, 490, 616, 692
HpaII CCGG 2 cut(s) 270, 311
HphI GGTGA 3 cut(s) 49, 652, 974
Hpy166II GTNNAC 3 cut(s) 323, 548, 721
Hpy188I TCNGA 5 cut(s) 367, 459, 576, 600, 621
Hpy188III TCNNGA 2 cut(s) 259, 767
Hpy8I GTNNAC 3 cut(s) 323, 548, 721
HpyAV CCTTC 4 cut(s) 100, 190, 395, 625
HpyCH4III ACNGT 3 cut(s) 666, 806, 841
HpyCH4V TGCA 9 cut(s) 44, 323, 548, 687, 703, 744, 801, 817, 899
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 320, 896
HpyF3I CTNAG 3 cut(s) 375, 458, 747
Hsp92II CATG 5 cut(s) 14, 20, 88, 128, 176
HspAI GCGC 1 cut(s) 14
KpnI GGTACC 2 cut(s) 522, 944
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 426, 655, 789
LmnI GCTCC 4 cut(s) 295, 313, 334, 833
Lsp1109I GCAGC 4 cut(s) 274, 422, 766, 851
LweI GCATC 4 cut(s) 67, 674, 877, 908
MabI ACCWGGT 2 cut(s) 316, 943
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 3 cut(s) 280, 445, 466
MalI GATC 4 cut(s) 71, 428, 657, 791
MboI GATC 4 cut(s) 69, 426, 655, 789
MboII GAAGA 2 cut(s) 349, 493
MfeI CAATTG 3 cut(s) 732, 796, 846
MhlI GDGCHC 3 cut(s) 325, 550, 830
MluCI AATT 9 cut(s) 39, 93, 430, 705, 732, 796, 846, 869, 1015
MlyI GAGTC 3 cut(s) 109, 271, 686
MmeI TCCRAC 2 cut(s) 290, 578
MnlI CCTC 5 cut(s) 342, 348, 351, 582, 805
MseI TTAA 3 cut(s) 231, 878, 992
MslI CAYNNNNRTG 2 cut(s) 15, 749
MspA1I CMGCKG 3 cut(s) 278, 413, 860
MspI CCGG 2 cut(s) 270, 311
MspR9I CCNGG 4 cut(s) 213, 318, 524, 945
MunI CAATTG 3 cut(s) 732, 796, 846
MvaI CCWGG 4 cut(s) 213, 318, 524, 945
MwoI GCNNNNNNNGC 3 cut(s) 284, 320, 896
NdeII GATC 4 cut(s) 69, 426, 655, 789
NlaIII CATG 5 cut(s) 14, 20, 88, 128, 176
NlaIV GGNNCC 5 cut(s) 252, 315, 520, 829, 942
NmuCI GTSAC 2 cut(s) 445, 466
NsbI TGCGCA 1 cut(s) 15
NspI RCATGY 2 cut(s) 14, 20
PaqCI CACCTGC 2 cut(s) 334, 559
PfeI GAWTC 4 cut(s) 26, 139, 490, 616
PkrI GCNGC 4 cut(s) 289, 412, 781, 866
PleI GAGTC 3 cut(s) 109, 270, 686
PpsI GAGTC 3 cut(s) 109, 270, 686
PpuMI RGGWCCY 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 4 cut(s) 211, 316, 522, 943
PspGI CCWGG 4 cut(s) 211, 316, 522, 943
PspN4I GGNNCC 5 cut(s) 252, 315, 520, 829, 942
PspPI GGNCC 3 cut(s) 183, 251, 569
PspPPI RGGWCCY 1 cut(s) 569
PvuII CAGCTG 3 cut(s) 278, 413, 860
RsaI GTAC 3 cut(s) 520, 541, 942
RsaNI GTAC 3 cut(s) 519, 540, 941
RseI CAYNNNNRTG 2 cut(s) 15, 749
SaqAI TTAA 3 cut(s) 231, 878, 992
SatI GCNGC 4 cut(s) 288, 411, 780, 865
Sau3AI GATC 4 cut(s) 69, 426, 655, 789
Sau96I GGNCC 3 cut(s) 183, 251, 569
SchI GAGTC 3 cut(s) 109, 271, 686
ScrFI CCNGG 4 cut(s) 213, 318, 524, 945
SduI GDGCHC 3 cut(s) 325, 550, 830
SexAI ACCWGGT 2 cut(s) 316, 943
SfaNI GCATC 4 cut(s) 67, 674, 877, 908
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 2 cut(s) 251, 569
SmiMI CAYNNNNRTG 2 cut(s) 15, 749
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 9 cut(s) 39, 93, 430, 705, 732, 796, 846, 869, 1015
SsiI CCGC 1 cut(s) 831
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 4 cut(s) 211, 316, 522, 943
TaaI ACNGT 3 cut(s) 666, 806, 841
TaqI TCGA 1 cut(s) 147
TasI AATT 9 cut(s) 39, 93, 430, 705, 732, 796, 846, 869, 1015
TfiI GAWTC 4 cut(s) 26, 139, 490, 616
Tru1I TTAA 3 cut(s) 231, 878, 992
Tru9I TTAA 3 cut(s) 231, 878, 992
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 2 cut(s) 445, 466
TseI GCWGC 4 cut(s) 287, 410, 779, 864
Tsp45I GTSAC 2 cut(s) 445, 466
TspDTI ATGAA 4 cut(s) 17, 141, 209, 494
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 79
VneI GTGCAC 2 cut(s) 321, 546
VpaK11BI GGWCC 2 cut(s) 251, 569
XapI RAATTY 3 cut(s) 93, 705, 1015
XceI RCATGY 2 cut(s) 14, 20
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.