Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007202

Physical Location & Seq

Genomic Coordinates Reverse (-)

14688177 .. 14692785

Gene Structure 4609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAATACACATGCGCATGTCCCAGAATCACATTGTCTAATTGCACAAGCTGTTTTCACCAACTTGTTGATCACTGATGCTTACATGAGCAAAATTTCCAGTAAGAAGGTGCTGACTCTGTGGCATGAAAATATACAGATTCTTGTCGAGTATAAGACCAAAGACCCAAATCATGTAGAGTGGGCCAAAGCTATGAAGGAACTATATATGCCTGGTTTGAGAGAATATGTTAAGAGTTTCTATCCGTTGGGTCCAGTCTGGAGTCCAACCGGCACAGCTGTTACTGCTGCTCCATCAAAACCAAAAGCTCCGGCACCAGGTGCACCTGCTCCTCCACCTCCTCCATCGGCTTCACTCTTCAGTTCTGAAACTTCTAAGGCTTCGTCATCACGCCCGAAAGAAGGGATGGCAGCTGTTTTCCAAGAGATCAATTCTGGCAAGCCTGTGACTACAGGTCTGAGAAAGGTCACAGATGATATGAAGACAAAGAATCGTGCTGACAGAACTGGGGTTGTTGGTACCCAGGAGAAAGAAAGTCGTACTAGTGCACCTGCTGTTTCTAAAGTAGGACCTCCGAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGCTGTTGAGAATCAGATTGGAAAGAAGGATTTGGTGATTAGTGAATGTGATCCAAAACAGTCAGTATATATTTTTGGATGCAAAGACTCTGTTTTGCAAATTCAAGGGAAAGTGAACAACATTACAATTGACAAATGCACTAAGATGGGAGTTGTATTTCAGGATGTTGTGGCTGCTTTTGAGATCGTCAATTGCAACCGTGTTGAGGTGCAATGTCAGGGCTCCGCCCCAACAGTTTCAATTGACAACACAGCTGGCTGCCAATTTTATTTAAGCAAGGATGCTCTATCTGCATCTATAACAACGGCTAAATCAAGTGAAGTGAATATAATGGTACCTGGTGCTGAACCTGATGGTGATTGGGGTGAGCACGCATTGCCAGAACAGTTTATTCATGTGTATAAGGATGGTCGCTTTGAAACAACTCCAGTCTCTCACTCAGCAGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007163 GO:0007165 GO:0008092 GO:0008150 GO:0008154 GO:0008179 GO:0009653 GO:0009826 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0019899 GO:0023052 GO:0030029 GO:0030036 GO:0030863 GO:0030864 GO:0031279 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045761 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051339 GO:0051716 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0097435 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_C CAP_N

Protein Analysis

352

Amino Acids

38.12

Weight (kDa)

8.34

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP_C	PF08603	191 - 348	4.6e-62	Adenylate cyclase associated (CAP) C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34490 AT4G34490
fragaria_vesca	FvH4_2g08710 FvH4_2g08710
malus_domestica	MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1
prunus_persica	Prupe.8G097900_v2.0.a1
pyrus_communis	pycom05g05800 pycom10g06010
rosa_chinensis	RchiOBHm_Chr6g0264151
rosa_laevigata	RLG00000014286 RLG00000014287
rosa_multiflora	Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570
rosa_rugosa	Rorug04G0194500 Rorug06G0007800
rosa_samantha	Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200
rosa_wichuraiana	Rw6G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	334, 559
Acc16I	TGCGCA	1 cut(s)	15
Acc36I	ACCTGC	2 cut(s)	334, 559
Acc65I	GGTACC	2 cut(s)	518, 940
AccB1I	GGYRCC	3 cut(s)	313, 518, 940
AciI	CCGC	1 cut(s)	831
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	2 cut(s)	93, 705
AcuI	CTGAAG	1 cut(s)	343
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	520, 541, 942
AfiI	CCNNNNNNNGG	3 cut(s)	317, 401, 811
AgsI	TTSAA	4 cut(s)	590, 710, 846, 1025
AhdI	GACNNNNNGTC	1 cut(s)	453
AhlI	ACTAGT	1 cut(s)	542
AjnI	CCWGG	4 cut(s)	211, 316, 522, 943
AluBI	AGCT	7 cut(s)	50, 191, 278, 308, 413, 586, 860
AluI	AGCT	7 cut(s)	50, 191, 278, 308, 413, 586, 860
Alw21I	GWGCWC	3 cut(s)	325, 550, 978
Alw26I	GTCTC	1 cut(s)	1042
Alw44I	GTGCAC	2 cut(s)	321, 546
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	1 cut(s)	183
ApaLI	GTGCAC	2 cut(s)	321, 546
ApeKI	GCWGC	4 cut(s)	287, 410, 779, 864
ApoI	RAATTY	2 cut(s)	93, 705
Asp718I	GGTACC	2 cut(s)	518, 940
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	183, 251, 569
AsuHPI	GGTGA	4 cut(s)	49, 652, 974, 983
AvaII	GGWCC	2 cut(s)	251, 569
BaeGI	GKGCMC	2 cut(s)	325, 550
BanI	GGYRCC	3 cut(s)	313, 518, 940
BanII	GRGCYC	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	3 cut(s)	325, 550, 978
BbvI	GCAGC	4 cut(s)	274, 422, 766, 851
BccI	CCATC	6 cut(s)	301, 352, 400, 745, 953, 1007
BceAI	ACGGC	1 cut(s)	927
BciT130I	CCWGG	4 cut(s)	213, 318, 524, 945
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	1042
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	2 cut(s)	334, 559
BisI	GCNGC	4 cut(s)	288, 411, 780, 865
BlsI	GCNGC	4 cut(s)	289, 412, 781, 866
Bme1390I	CCNGG	4 cut(s)	213, 318, 524, 945
Bme18I	GGWCC	2 cut(s)	251, 569
BmeRI	GACNNNNNGTC	1 cut(s)	453
BmgT120I	GGNCC	3 cut(s)	183, 251, 569
BmiI	GGNNCC	5 cut(s)	252, 315, 520, 829, 942
BmrFI	CCNGG	4 cut(s)	213, 318, 524, 945
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	4 cut(s)	67, 674, 877, 908
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	2 cut(s)	280, 1017
BsaJI	CCNNGG	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 401, 811
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	4 cut(s)	99, 254, 511, 1034
Bse3DI	GCAATG	2 cut(s)	824, 980
BseBI	CCWGG	4 cut(s)	213, 318, 524, 945
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	5 cut(s)	411, 689, 775, 892, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	317, 401, 811
BseMI	GCAATG	2 cut(s)	824, 980
BseMII	CTCAG	2 cut(s)	449, 1059
BseNI	ACTGG	4 cut(s)	99, 254, 511, 1034
BseRI	GAGGAG	2 cut(s)	321, 330
BseSI	GKGCMC	2 cut(s)	325, 550
BseXI	GCAGC	4 cut(s)	274, 422, 766, 851
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	3 cut(s)	313, 518, 940
BsiHKAI	GWGCWC	3 cut(s)	325, 550, 978
BsiSI	CCGG	2 cut(s)	270, 311
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	3 cut(s)	317, 401, 811
BsmAI	GTCTC	1 cut(s)	1042
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	4 cut(s)	325, 550, 830, 978
Bsp143I	GATC	4 cut(s)	69, 426, 655, 789
BspACI	CCGC	1 cut(s)	831
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	450, 1058
BspLI	GGNNCC	5 cut(s)	252, 315, 520, 829, 942
BspMI	ACCTGC	2 cut(s)	334, 559
BspPI	GGATC	1 cut(s)	650
BspT107I	GGYRCC	3 cut(s)	313, 518, 940
BsrDI	GCAATG	2 cut(s)	824, 980
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	4 cut(s)	99, 254, 511, 1034
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	4 cut(s)	69, 426, 655, 789
Bst2UI	CCWGG	4 cut(s)	213, 318, 524, 945
Bst4CI	ACNGT	4 cut(s)	666, 806, 841, 993
Bst6I	CTCTTC	1 cut(s)	362
BstAPI	GCANNNNNTGC	2 cut(s)	320, 982
BstC8I	GCNNGC	3 cut(s)	440, 862, 978
BstDEI	CTNAG	4 cut(s)	375, 458, 747, 1045
BstF5I	GGATG	5 cut(s)	411, 689, 775, 892, 1018
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	4 cut(s)	72, 429, 658, 792
BstMAI	GTCTC	1 cut(s)	1042
BstMBI	GATC	4 cut(s)	69, 426, 655, 789
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 320, 896, 982
BstNI	CCWGG	4 cut(s)	213, 318, 524, 945
BstNSI	RCATGY	2 cut(s)	14, 20
BstSCI	CCNGG	4 cut(s)	211, 316, 522, 943
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	2 cut(s)	325, 550
BstV1I	GCAGC	4 cut(s)	274, 422, 766, 851
BstV2I	GAAGAC	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	5 cut(s)	411, 689, 775, 892, 1018
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	2 cut(s)	334, 559
Cac8I	GCNNGC	3 cut(s)	440, 862, 978
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	183, 251, 569
CsiI	ACCWGGT	2 cut(s)	316, 943
Csp6I	GTAC	3 cut(s)	519, 540, 941
CviAII	CATG	6 cut(s)	11, 17, 85, 125, 173, 1001
CviQI	GTAC	3 cut(s)	519, 540, 941
DdeI	CTNAG	4 cut(s)	375, 458, 747, 1045
DpnI	GATC	4 cut(s)	71, 428, 657, 791
DpnII	GATC	4 cut(s)	69, 426, 655, 789
DraIII	CACNNNGTG	1 cut(s)	320
DriI	GACNNNNNGTC	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	362
Eam1105I	GACNNNNNGTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	1 cut(s)	820
Eco24I	GRGCYC	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	251, 569
Eco57I	CTGAAG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	4 cut(s)	211, 316, 522, 943
EcoT38I	GRGCYC	1 cut(s)	830
FaeI	CATG	6 cut(s)	14, 20, 88, 128, 176, 1004
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	6 cut(s)	10, 16, 84, 124, 172, 1000
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	288, 411, 780, 865
FokI	GGATG	5 cut(s)	418, 696, 782, 899, 1025
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	4 cut(s)	288, 411, 780, 865
FspAI	RTGCGCAY	1 cut(s)	15
FspBI	CTAG	1 cut(s)	543
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	4 cut(s)	288, 411, 780, 865
GsuI	CTGGAG	2 cut(s)	280, 1017
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	270, 311
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	6 cut(s)	14, 20, 88, 128, 176, 1004
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	7 cut(s)	26, 115, 139, 262, 490, 616, 692
HpaII	CCGG	2 cut(s)	270, 311
HphI	GGTGA	4 cut(s)	49, 652, 974, 983
Hpy166II	GTNNAC	3 cut(s)	323, 548, 721
Hpy188I	TCNGA	5 cut(s)	367, 459, 576, 600, 621
Hpy188III	TCNNGA	2 cut(s)	259, 767
Hpy8I	GTNNAC	3 cut(s)	323, 548, 721
HpyAV	CCTTC	4 cut(s)	100, 190, 395, 625
HpyCH4III	ACNGT	4 cut(s)	666, 806, 841, 993
HpyCH4V	TGCA	9 cut(s)	44, 323, 548, 687, 703, 744, 801, 817, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 320, 896, 982
HpyF3I	CTNAG	4 cut(s)	375, 458, 747, 1045
Hsp92II	CATG	6 cut(s)	14, 20, 88, 128, 176, 1004
HspAI	GCGC	1 cut(s)	14
KpnI	GGTACC	2 cut(s)	522, 944
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	69, 426, 655, 789
LmnI	GCTCC	4 cut(s)	295, 313, 334, 833
Lsp1109I	GCAGC	4 cut(s)	274, 422, 766, 851
LweI	GCATC	4 cut(s)	67, 674, 877, 908
MabI	ACCWGGT	2 cut(s)	316, 943
MaeI	CTAG	1 cut(s)	543
MaeIII	GTNAC	3 cut(s)	280, 445, 466
MalI	GATC	4 cut(s)	71, 428, 657, 791
MboI	GATC	4 cut(s)	69, 426, 655, 789
MboII	GAAGA	2 cut(s)	349, 493
MfeI	CAATTG	3 cut(s)	732, 796, 846
MhlI	GDGCHC	4 cut(s)	325, 550, 830, 978
MluCI	AATT	8 cut(s)	39, 93, 430, 705, 732, 796, 846, 869
MlyI	GAGTC	3 cut(s)	109, 271, 686
MmeI	TCCRAC	2 cut(s)	290, 578
MnlI	CCTC	6 cut(s)	342, 348, 351, 582, 805, 1046
MseI	TTAA	2 cut(s)	231, 878
MslI	CAYNNNNRTG	2 cut(s)	15, 749
MspA1I	CMGCKG	3 cut(s)	278, 413, 860
MspI	CCGG	2 cut(s)	270, 311
MspR9I	CCNGG	4 cut(s)	213, 318, 524, 945
MunI	CAATTG	3 cut(s)	732, 796, 846
MvaI	CCWGG	4 cut(s)	213, 318, 524, 945
MwoI	GCNNNNNNNGC	4 cut(s)	284, 320, 896, 982
NdeII	GATC	4 cut(s)	69, 426, 655, 789
NlaIII	CATG	6 cut(s)	14, 20, 88, 128, 176, 1004
NlaIV	GGNNCC	5 cut(s)	252, 315, 520, 829, 942
NmuCI	GTSAC	2 cut(s)	445, 466
NsbI	TGCGCA	1 cut(s)	15
NspI	RCATGY	2 cut(s)	14, 20
PaqCI	CACCTGC	2 cut(s)	334, 559
PfeI	GAWTC	4 cut(s)	26, 139, 490, 616
PkrI	GCNGC	4 cut(s)	289, 412, 781, 866
PleI	GAGTC	3 cut(s)	109, 270, 686
PpsI	GAGTC	3 cut(s)	109, 270, 686
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	4 cut(s)	211, 316, 522, 943
PspGI	CCWGG	4 cut(s)	211, 316, 522, 943
PspN4I	GGNNCC	5 cut(s)	252, 315, 520, 829, 942
PspPI	GGNCC	3 cut(s)	183, 251, 569
PspPPI	RGGWCCY	1 cut(s)	569
PvuII	CAGCTG	3 cut(s)	278, 413, 860
RsaI	GTAC	3 cut(s)	520, 541, 942
RsaNI	GTAC	3 cut(s)	519, 540, 941
RseI	CAYNNNNRTG	2 cut(s)	15, 749
SaqAI	TTAA	2 cut(s)	231, 878
SatI	GCNGC	4 cut(s)	288, 411, 780, 865
Sau3AI	GATC	4 cut(s)	69, 426, 655, 789
Sau96I	GGNCC	3 cut(s)	183, 251, 569
SchI	GAGTC	3 cut(s)	109, 271, 686
ScrFI	CCNGG	4 cut(s)	213, 318, 524, 945
SduI	GDGCHC	4 cut(s)	325, 550, 830, 978
SexAI	ACCWGGT	2 cut(s)	316, 943
SfaNI	GCATC	4 cut(s)	67, 674, 877, 908
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	251, 569
SmiMI	CAYNNNNRTG	2 cut(s)	15, 749
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	8 cut(s)	39, 93, 430, 705, 732, 796, 846, 869
SsiI	CCGC	1 cut(s)	831
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	4 cut(s)	211, 316, 522, 943
TaaI	ACNGT	4 cut(s)	666, 806, 841, 993
TaqI	TCGA	1 cut(s)	147
TasI	AATT	8 cut(s)	39, 93, 430, 705, 732, 796, 846, 869
TfiI	GAWTC	4 cut(s)	26, 139, 490, 616
Tru1I	TTAA	2 cut(s)	231, 878
Tru9I	TTAA	2 cut(s)	231, 878
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	2 cut(s)	445, 466
TseI	GCWGC	4 cut(s)	287, 410, 779, 864
Tsp45I	GTSAC	2 cut(s)	445, 466
TspDTI	ATGAA	5 cut(s)	17, 141, 209, 494, 989
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	79
VneI	GTGCAC	2 cut(s)	321, 546
VpaK11BI	GGWCC	2 cut(s)	251, 569
XapI	RAATTY	2 cut(s)	93, 705
XceI	RCATGY	2 cut(s)	14, 20
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.