MD05G1067200.v1.1

Belongs to the CAP family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
12619081 .. 12623701
4621 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1067200.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGGAGGAGAAGCTGATAGAGAGGCTGGAATCGGCTGTGTCGCGCTTGGAGGCGCTGTCGCTGACCGCCGGTGGGGGTTCGGCGACGGCCAGGGGTTTCGACGACGCGCCGCTGGATCCGTCGATTTTGGCTTATGAGGATCTGATTGGGCAGTACCTGGGTAGGGTTTCGGCCGCAGCTGAGAAGATTGGGGGGCAGGTGTTGGACATCACTAAGGTTCTCCAGCAAGCTTTTTCTGCTCAGAAGGACCTGCTTATCCAGGTTAAGCAAACTCAGAAACCTGACAATGCAGGGTTGGCTGAGTTCCTGAAACCACTGAACGAGGCAATCACAAAGGCAAATTCTTTGACAGAAGGGAGGCGGTCTGATTTTTTTAATCACTTGAAGACTGCTGCTGACAGTCTTTCAGCTTTGGCATGGATTGCATATACAGGGAAAGAATGTGGTATGAGCATGCCTATTGCACACGTCGAAGAAAGTTGGCAGATGGCTGAATTTTATTGCAACAAGATTCTTGTGGAGTATAAAACCAAAGACCCAAATCATTTAGAGTGGGCCAAAGCTCTCAAGGAACTGTATTTGCCTGGTTTAAGAGATTATGTTAAGAGTTTCTATCCGTTGGGTCCAGTTTGGAGTTCAACTGGTAAAGCTGTAACTGCTGCTCCTTCAAAACCAAAAGCTCCTGCCCCAGGTGGCCCTGCTCCTCCACCTCCTCCTTCAGCATCACTCTTTAGCTCTGAAACTTCACAGGCTTCATCATCTCGCCCCAAAGAAGGGATGTCAGCTGTTTTCCAAGAGATTAATTCTGGAAAGCCTGTTACTTCAGGTCTGAGAAAGGTGACAGATGATATGAAGACAAAGAATCGTGCCGATAGAACTGGCGTTATTGGTACCCATGAGAAGGAAAGTCGTACGAGTTCACCTGCTGTTGCTAAAGTAGGAACACCAAAGTTTGAGCTCCAAATGGGTCGCAAGTGGGTTGTTGAGAATCAGATTGCGAAGAAAGATTTGGTTATTAGTGAAAGTGATTCAAAACAGTCTGTATATATTTTTGGGTGCAAAGATTCTGTTCTGCAAATTCAAGGGAAAGTAAACAACATTACCATTGACAAATGCACTAAAATGGGAGTCCTATTTACGGATGTTGTGGCTGCTTGTGAAATTGTAAATTGCAACTGTGTTGAGGTGCAATGCCAGGGCTCAGCTCCTACTGTTTCAGTGGACAACACAGCTGGCTGCCAATTTTATTTGAGCAAAGATGCTCTGGGGGCATCTATAACAACTGCTAAGTCCAGTGAGGTCAATGTGTTGGTACCCAGTTCCGGAGCTGATGGTGATTGGGCAGAGCATGCTTTGCCAGAACAGTTTATTCATGTGTTCAAGGATGGTCGCTTTGAAACTACATCAGTCTCTCACTCGGCAGGAGGGTAA

Protein Analysis

477

Amino Acids

51.12

Weight (kDa)

6.23

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP_N-CM PF01213 3 - 28 3.6e-06 CAP N-terminal conserved motif
CAP_N PF21938 45 - 206 6.5e-35 CAP, N-terminal domain
CAP_C PF08603 315 - 472 1.2e-59 Adenylate cyclase associated (CAP) C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 187, 931
Acc36I ACCTGC 3 cut(s) 187, 258, 931
Acc65I GGTACC 2 cut(s) 890, 1312
AccB1I GGYRCC 2 cut(s) 890, 1312
AccII CGCG 2 cut(s) 43, 107
AccIII TCCGGA 1 cut(s) 1322
AciI CCGC 4 cut(s) 66, 110, 174, 361
AclWI GGATC 3 cut(s) 110, 123, 147
AcoI YGGCCR 2 cut(s) 87, 171
AcsI RAATTY 3 cut(s) 340, 494, 1077
AcuI CTGAAG 2 cut(s) 702, 807
AfaI GTAC 4 cut(s) 155, 892, 913, 1314
AfiI CCNNNNNNNGG 8 cut(s) 72, 163, 689, 773, 774, 901, 1138, 1322
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 7 cut(s) 385, 639, 669, 1032, 1082, 1381, 1397
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 6 cut(s) 89, 156, 258, 583, 688, 1194
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 1 cut(s) 1414
AlwI GGATC 3 cut(s) 110, 123, 147
AlwNI CAGNNNCTG 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 1322
AoxI GGCC 4 cut(s) 87, 171, 555, 694
ApeKI GCWGC 5 cut(s) 176, 392, 659, 1151, 1236
ApoI RAATTY 3 cut(s) 340, 494, 1077
AseI ATTAAT 1 cut(s) 801
Asp718I GGTACC 2 cut(s) 890, 1312
AspLEI GCGC 3 cut(s) 45, 55, 109
AspS9I GGNCC 4 cut(s) 247, 555, 623, 695
AsuHPI GGTGA 3 cut(s) 850, 912, 1346
AvaII GGWCC 2 cut(s) 247, 623
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 890, 1312
BanII GRGCYC 2 cut(s) 960, 1202
BbsI GAAGAC 2 cut(s) 392, 860
Bbv12I GWGCWC 1 cut(s) 960
BbvI GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
BccI CCATC 3 cut(s) 481, 1325, 1379
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 6 cut(s) 91, 158, 260, 585, 690, 1196
BcoDI GTCTC 1 cut(s) 1414
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 3 cut(s) 187, 258, 931
BisI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
BlpI GCTNAGC 1 cut(s) 1201
BlsI GCNGC 7 cut(s) 111, 175, 178, 394, 661, 1153, 1238
Bme1390I CCNGG 6 cut(s) 91, 158, 260, 585, 690, 1196
Bme18I GGWCC 2 cut(s) 247, 623
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 4 cut(s) 247, 555, 623, 695
BmiI GGNNCC 4 cut(s) 117, 624, 892, 1314
BmrFI CCNGG 6 cut(s) 91, 158, 260, 585, 690, 1196
BmrI ACTGGG 1 cut(s) 1311
BmsI GCATC 3 cut(s) 731, 1249, 1280
BmuI ACTGGG 1 cut(s) 1311
BpiI GAAGAC 2 cut(s) 392, 860
BpmI CTGGAG 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 1201
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 90, 157, 688, 1195
BsaWI WCCGGW 1 cut(s) 1322
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 646, 676
Bsc4I CCNNNNNNNGG 8 cut(s) 72, 163, 689, 773, 774, 901, 1138, 1322
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 5 cut(s) 626, 646, 883, 1293, 1317
Bse3DI GCAATG 1 cut(s) 1196
BseAI TCCGGA 1 cut(s) 1322
BseBI CCWGG 6 cut(s) 91, 158, 260, 585, 690, 1196
BseDI CCNNGG 4 cut(s) 90, 157, 688, 1195
BseGI GGATG 3 cut(s) 783, 1147, 1390
BseLI CCNNNNNNNGG 8 cut(s) 72, 163, 689, 773, 774, 901, 1138, 1322
BseMI GCAATG 1 cut(s) 1196
BseMII CTCAG 6 cut(s) 171, 254, 287, 291, 821, 1215
BseNI ACTGG 5 cut(s) 626, 646, 883, 1293, 1317
BseRI GAGGAG 3 cut(s) 20, 693, 702
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
Bsh1236I CGCG 2 cut(s) 43, 107
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 4 cut(s) 89, 173, 557, 696
BshNI GGYRCC 2 cut(s) 890, 1312
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 960
BsiSI CCGG 2 cut(s) 69, 1323
BsiWI CGTACG 1 cut(s) 911
BslI CCNNNNNNNGG 8 cut(s) 72, 163, 689, 773, 774, 901, 1138, 1322
BsmAI GTCTC 1 cut(s) 1414
BsnI GGCC 4 cut(s) 89, 173, 557, 696
Bsp1286I GDGCHC 2 cut(s) 960, 1202
Bsp13I TCCGGA 1 cut(s) 1322
Bsp143I GATC 2 cut(s) 115, 139
Bsp1720I GCTNAGC 1 cut(s) 1201
BspACI CCGC 4 cut(s) 66, 110, 174, 361
BspANI GGCC 4 cut(s) 89, 173, 557, 696
BspCNI CTCAG 6 cut(s) 172, 253, 286, 292, 822, 1214
BspEI TCCGGA 1 cut(s) 1322
BspFNI CGCG 2 cut(s) 43, 107
BspLI GGNNCC 4 cut(s) 117, 624, 892, 1314
BspMI ACCTGC 3 cut(s) 187, 258, 931
BspPI GGATC 3 cut(s) 110, 123, 147
BspT107I GGYRCC 2 cut(s) 890, 1312
BsrDI GCAATG 1 cut(s) 1196
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 5 cut(s) 626, 646, 883, 1293, 1317
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 90, 157, 688, 1195
BssMI GATC 2 cut(s) 115, 139
Bst2UI CCWGG 6 cut(s) 91, 158, 260, 585, 690, 1196
Bst4CI ACNGT 6 cut(s) 401, 576, 1038, 1178, 1213, 1365
BstAPI GCANNNNNTGC 3 cut(s) 422, 1349, 1354
BstC8I GCNNGC 4 cut(s) 228, 455, 1234, 1350
BstDEI CTNAG 8 cut(s) 180, 213, 240, 273, 300, 830, 1201, 1287
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 3 cut(s) 783, 1147, 1390
BstFNI CGCG 2 cut(s) 43, 107
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 45, 55, 109
BstKTI GATC 2 cut(s) 118, 142
BstMAI GTCTC 1 cut(s) 1414
BstMBI GATC 2 cut(s) 115, 139
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 7 cut(s) 236, 296, 422, 656, 1268, 1349, 1354
BstNI CCWGG 6 cut(s) 91, 158, 260, 585, 690, 1196
BstNSI RCATGY 2 cut(s) 457, 1352
BstSCI CCNGG 6 cut(s) 89, 156, 258, 583, 688, 1194
BstUI CGCG 2 cut(s) 43, 107
BstV1I GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
BstV2I GAAGAC 2 cut(s) 392, 860
BstX2I RGATCY 2 cut(s) 115, 139
BstYI RGATCY 2 cut(s) 115, 139
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 4 cut(s) 89, 173, 557, 696
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 3 cut(s) 783, 1147, 1390
BtsIMutI CAGTG 3 cut(s) 314, 1224, 1300
BveI ACCTGC 3 cut(s) 187, 258, 931
Cac8I GCNNGC 4 cut(s) 228, 455, 1234, 1350
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 3 cut(s) 45, 55, 109
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 4 cut(s) 247, 555, 623, 695
CseI GACGC 1 cut(s) 113
Csp6I GTAC 4 cut(s) 154, 891, 912, 1313
CviAII CATG 5 cut(s) 417, 454, 896, 1349, 1373
CviQI GTAC 4 cut(s) 154, 891, 912, 1313
DdeI CTNAG 8 cut(s) 180, 213, 240, 273, 300, 830, 1201, 1287
DpnI GATC 2 cut(s) 117, 141
DpnII GATC 2 cut(s) 115, 139
EaeI YGGCCR 2 cut(s) 87, 171
EagI CGGCCG 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 958
EclXI CGGCCG 1 cut(s) 171
Eco24I GRGCYC 2 cut(s) 960, 1202
Eco47I GGWCC 2 cut(s) 247, 623
Eco52I CGGCCG 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 958
Eco57I CTGAAG 2 cut(s) 702, 807
EcoICRI GAGCTC 1 cut(s) 958
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 6 cut(s) 89, 156, 258, 583, 688, 1194
EcoT38I GRGCYC 2 cut(s) 960, 1202
FaeI CATG 5 cut(s) 420, 457, 899, 1352, 1376
FatI CATG 5 cut(s) 416, 453, 895, 1348, 1372
Fnu4HI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
FokI GGATG 3 cut(s) 790, 1154, 1397
FriOI GRGCYC 2 cut(s) 960, 1202
Fsp4HI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
GlaI GCGC 3 cut(s) 44, 54, 108
GluI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 4 cut(s) 89, 173, 557, 696
HapII CCGG 2 cut(s) 69, 1323
HgaI GACGC 1 cut(s) 113
HhaI GCGC 3 cut(s) 45, 55, 109
Hin1II CATG 5 cut(s) 420, 457, 899, 1352, 1376
Hin6I GCGC 3 cut(s) 43, 53, 107
HinP1I GCGC 3 cut(s) 43, 53, 107
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 7 cut(s) 29, 511, 862, 988, 1028, 1064, 1128
HpaII CCGG 2 cut(s) 69, 1323
HphI GGTGA 3 cut(s) 850, 912, 1346
Hpy166II GTNNAC 3 cut(s) 920, 1093, 1222
Hpy188I TCNGA 7 cut(s) 144, 243, 276, 367, 739, 831, 993
Hpy188III TCNNGA 3 cut(s) 307, 807, 1323
Hpy8I GTNNAC 3 cut(s) 920, 1093, 1222
Hpy99I CGWCG 5 cut(s) 88, 104, 107, 124, 473
HpyAV CCTTC 6 cut(s) 238, 347, 675, 726, 767, 895
HpyCH4III ACNGT 6 cut(s) 401, 576, 1038, 1178, 1213, 1365
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 9 cut(s) 290, 425, 464, 504, 1059, 1075, 1116, 1173, 1189
HpyF10VI GCNNNNNNNGC 7 cut(s) 236, 296, 422, 656, 1268, 1349, 1354
HpyF3I CTNAG 8 cut(s) 180, 213, 240, 273, 300, 830, 1201, 1287
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 5 cut(s) 420, 457, 899, 1352, 1376
HspAI GCGC 3 cut(s) 43, 53, 107
Kpn2I TCCGGA 1 cut(s) 1322
KpnI GGTACC 2 cut(s) 894, 1316
Kzo9I GATC 2 cut(s) 115, 139
LmnI GCTCC 6 cut(s) 667, 685, 706, 963, 1210, 1325
Lsp1109I GCAGC 5 cut(s) 188, 379, 646, 1138, 1223
LweI GCATC 3 cut(s) 731, 1249, 1280
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 3 cut(s) 652, 817, 838
MalI GATC 2 cut(s) 117, 141
MboI GATC 2 cut(s) 115, 139
MboII GAAGA 5 cut(s) 196, 397, 485, 865, 1012
MflI RGATCY 2 cut(s) 115, 139
MhlI GDGCHC 2 cut(s) 960, 1202
MluCI AATT 7 cut(s) 340, 494, 802, 1077, 1161, 1168, 1241
MlyI GAGTC 1 cut(s) 1137
MmeI TCCRAC 1 cut(s) 183
MroI TCCGGA 1 cut(s) 1322
MseI TTAA 5 cut(s) 264, 375, 590, 603, 801
MslI CAYNNNNRTG 1 cut(s) 1121
MspA1I CMGCKG 4 cut(s) 112, 179, 785, 1232
MspI CCGG 2 cut(s) 69, 1323
MspR9I CCNGG 6 cut(s) 91, 158, 260, 585, 690, 1196
MvaI CCWGG 6 cut(s) 91, 158, 260, 585, 690, 1196
MvnI CGCG 2 cut(s) 43, 107
MwoI GCNNNNNNNGC 7 cut(s) 236, 296, 422, 656, 1268, 1349, 1354
NdeII GATC 2 cut(s) 115, 139
NlaIII CATG 5 cut(s) 420, 457, 899, 1352, 1376
NlaIV GGNNCC 4 cut(s) 117, 624, 892, 1314
NmeAIII GCCGAG 1 cut(s) 1397
NmuCI GTSAC 1 cut(s) 838
NspI RCATGY 2 cut(s) 457, 1352
PaeI GCATGC 2 cut(s) 457, 1352
PaqCI CACCTGC 2 cut(s) 187, 931
PfeI GAWTC 6 cut(s) 29, 511, 862, 988, 1028, 1064
Pfl23II CGTACG 1 cut(s) 911
PkrI GCNGC 7 cut(s) 111, 175, 178, 394, 661, 1153, 1238
PleI GAGTC 1 cut(s) 1136
PpsI GAGTC 1 cut(s) 1136
PpuMI RGGWCCY 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 960
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 6 cut(s) 89, 156, 258, 583, 688, 1194
PspGI CCWGG 6 cut(s) 89, 156, 258, 583, 688, 1194
PspLI CGTACG 1 cut(s) 911
PspN4I GGNNCC 4 cut(s) 117, 624, 892, 1314
PspPI GGNCC 4 cut(s) 247, 555, 623, 695
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 115, 139
PvuII CAGCTG 3 cut(s) 179, 785, 1232
RsaI GTAC 4 cut(s) 155, 892, 913, 1314
RsaNI GTAC 4 cut(s) 154, 891, 912, 1313
RseI CAYNNNNRTG 1 cut(s) 1121
SacI GAGCTC 1 cut(s) 960
SaqAI TTAA 5 cut(s) 264, 375, 590, 603, 801
SatI GCNGC 7 cut(s) 110, 174, 177, 393, 660, 1152, 1237
Sau3AI GATC 2 cut(s) 115, 139
Sau96I GGNCC 4 cut(s) 247, 555, 623, 695
SchI GAGTC 1 cut(s) 1137
ScrFI CCNGG 6 cut(s) 91, 158, 260, 585, 690, 1196
SduI GDGCHC 2 cut(s) 960, 1202
SfaNI GCATC 3 cut(s) 731, 1249, 1280
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 2 cut(s) 247, 623
SmiMI CAYNNNNRTG 1 cut(s) 1121
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 2 cut(s) 457, 1352
Sse9I AATT 7 cut(s) 340, 494, 802, 1077, 1161, 1168, 1241
SsiI CCGC 4 cut(s) 66, 110, 174, 361
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 6 cut(s) 89, 156, 258, 583, 688, 1194
TaaI ACNGT 6 cut(s) 401, 576, 1038, 1178, 1213, 1365
TaiI ACGT 1 cut(s) 471
TaqI TCGA 3 cut(s) 99, 122, 471
TasI AATT 7 cut(s) 340, 494, 802, 1077, 1161, 1168, 1241
TauI GCSGC 2 cut(s) 112, 176
TfiI GAWTC 6 cut(s) 29, 511, 862, 988, 1028, 1064
Tru1I TTAA 5 cut(s) 264, 375, 590, 603, 801
Tru9I TTAA 5 cut(s) 264, 375, 590, 603, 801
TscAI CASTG 3 cut(s) 321, 1224, 1300
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 5 cut(s) 176, 392, 659, 1151, 1236
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 3 cut(s) 744, 866, 1361
TspGWI ACGGA 3 cut(s) 108, 606, 1154
TspRI CASTG 3 cut(s) 321, 1224, 1300
VpaK11BI GGWCC 2 cut(s) 247, 623
VspI ATTAAT 1 cut(s) 801
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 3 cut(s) 340, 494, 1077
XceI RCATGY 2 cut(s) 457, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.