Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007202

Physical Location & Seq

Genomic Coordinates Reverse (-)

19941989 .. 19942890

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1122300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGTAGGTGGAAGATCCGACCGGGTTGAAAACCGGGTCAGATTACTGGTAGCAATTGGAGCAGGGGCTGCACTGGAGCCGGTTGACGTCGCTGCCGGTGTTGAGCACCATGTAGAACGACTTCGCCGGAGTCCTGAGGCTGATTCGGGAGAAGTACTCGTCGCTGCCCTAGCTAACGCTAGAGACGACAGGGGTGGAAAGGTCCGTAGAGAGAGAAATACACAGAGTGTGGAAGAGAGAGTGCGGTTGAGGTTTGTGGCCATGGAGGAGAAGCTGATACAGAGGCTGGAATCGGCTGTGTCGCACTTAGAGGTGTTGTCGTTGTCCGGTGGTGGAGGGTCGGCGACAGCCAGGGGTTTCCAGGATGTGCCTCTGGATCCGTCGATTGTGGCTTATGAGGATCTAATTGGGCAGTACTTGGGTAGGGTTTCGGCTGCAGCTGAGAAGAATTGGGGGGGGGGGGGGGGGGGGGGCGGATGCTGGGCATCACCAAGGTTCTCCAGCAAGCTTTTTCTACTTAGAAGGACTTGCTTCCAGGTTAAGCAGGACTTTCTTCCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007163 GO:0007165 GO:0008092 GO:0008150 GO:0008154 GO:0008179 GO:0009653 GO:0009826 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0019899 GO:0023052 GO:0030029 GO:0030036 GO:0030863 GO:0030864 GO:0031279 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045761 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051339 GO:0051716 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0097435 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_C CAP_N

Protein Analysis

189

Amino Acids

20.15

Weight (kDa)

8.71

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34490 AT4G34490
fragaria_vesca	FvH4_2g08710 FvH4_2g08710
malus_domestica	MD05G1067200.v1.1 MD10G1076900.v1.1 MD10G1122300.v1.1
prunus_persica	Prupe.8G097900_v2.0.a1
pyrus_communis	pycom05g05800 pycom10g06010
rosa_chinensis	RchiOBHm_Chr6g0264151
rosa_laevigata	RLG00000014286 RLG00000014287
rosa_multiflora	Rmu_co8011486.1_g000001 Rmu_sc0012952.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431440 Rroxscaffold_176G00431490 Rroxscaffold_7G00203570
rosa_rugosa	Rorug04G0194500 Rorug06G0007800
rosa_samantha	Rh6AG129400 Rh6BG125600 Rh6CG124400 Rh6DG111200
rosa_wichuraiana	Rw6G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
AciI	CCGC	2 cut(s)	247, 477
AclWI	GGATC	4 cut(s)	12, 374, 387, 411
AcoI	YGGCCR	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	159, 419
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	4 cut(s)	353, 363, 537, 559
AluBI	AGCT	4 cut(s)	176, 277, 443, 511
AluI	AGCT	4 cut(s)	176, 277, 443, 511
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	4 cut(s)	12, 374, 387, 411
AlwNI	CAGNNNCTG	2 cut(s)	71, 289
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	5 cut(s)	71, 95, 167, 437, 440
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	26, 38
AsuHPI	GGTGA	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	379
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	5 cut(s)	58, 82, 154, 424, 452
BciT130I	CCWGG	4 cut(s)	355, 365, 539, 561
BcnI	CCSGG	2 cut(s)	26, 38
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	173, 183
BfmI	CTRYAG	2 cut(s)	6, 438
BisI	GCNGC	5 cut(s)	72, 96, 168, 438, 441
BlsI	GCNGC	5 cut(s)	73, 97, 169, 439, 442
BmcAI	AGTACT	2 cut(s)	159, 419
Bme1390I	CCNGG	6 cut(s)	26, 38, 355, 365, 539, 561
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	81, 381
BmrFI	CCNGG	6 cut(s)	26, 38, 355, 365, 539, 561
BmsI	GCATC	2 cut(s)	470, 497
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	2 cut(s)	98, 487
BpuMI	CCSGG	2 cut(s)	26, 38
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	264, 354, 494
BsaWI	WCCGGW	1 cut(s)	329
Bse118I	RCCGGY	2 cut(s)	82, 98
Bse1I	ACTGG	2 cut(s)	54, 81
Bse21I	CCTNAGG	1 cut(s)	138
BseBI	CCWGG	4 cut(s)	355, 365, 539, 561
BseDI	CCNNGG	3 cut(s)	264, 354, 494
BseGI	GGATG	2 cut(s)	373, 485
BseMII	CTCAG	2 cut(s)	129, 435
BseNI	ACTGG	2 cut(s)	54, 81
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	5 cut(s)	58, 82, 154, 424, 452
BseYI	CCCAGC	1 cut(s)	483
BsgI	GTGCAG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	6 cut(s)	25, 37, 83, 99, 130, 330
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	17, 379, 403
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	247, 477
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	130, 436
BspLI	GGNNCC	2 cut(s)	81, 381
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	4 cut(s)	12, 374, 387, 411
BsrFI	RCCGGY	2 cut(s)	82, 98
BsrI	ACTGG	2 cut(s)	54, 81
BssAI	RCCGGY	2 cut(s)	82, 98
BssECI	CCNNGG	3 cut(s)	264, 354, 494
BssMI	GATC	3 cut(s)	17, 379, 403
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	264, 494
Bst2UI	CCWGG	4 cut(s)	355, 365, 539, 561
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	4 cut(s)	138, 310, 444, 521
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	373, 485
BstKTI	GATC	3 cut(s)	20, 382, 406
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	3 cut(s)	17, 379, 403
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 71, 173
BstNI	CCWGG	4 cut(s)	355, 365, 539, 561
BstSCI	CCNGG	6 cut(s)	24, 36, 353, 363, 537, 559
BstSFI	CTRYAG	2 cut(s)	6, 438
BstV1I	GCAGC	5 cut(s)	58, 82, 154, 424, 452
BstX2I	RGATCY	3 cut(s)	17, 379, 403
BstYI	RGATCY	3 cut(s)	17, 379, 403
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	373, 485
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	2 cut(s)	71, 289
Cfr10I	RCCGGY	2 cut(s)	82, 98
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	158, 418
CviAII	CATG	2 cut(s)	113, 265
CviQI	GTAC	2 cut(s)	158, 418
DdeI	CTNAG	4 cut(s)	138, 310, 444, 521
DpnI	GATC	3 cut(s)	19, 381, 405
DpnII	GATC	3 cut(s)	17, 379, 403
DraIII	CACNNNGTG	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	264, 494
Eco47I	GGWCC	1 cut(s)	205
Eco81I	CCTNAGG	1 cut(s)	138
EcoRII	CCWGG	4 cut(s)	353, 363, 537, 559
EcoT14I	CCWWGG	2 cut(s)	264, 494
ErhI	CCWWGG	2 cut(s)	264, 494
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	2 cut(s)	116, 268
FaiI	YATR	3 cut(s)	114, 266, 399
FalI	AAGNNNNNCTT	1 cut(s)	536
FatI	CATG	2 cut(s)	112, 264
Fnu4HI	GCNGC	5 cut(s)	72, 96, 168, 438, 441
FokI	GGATG	2 cut(s)	380, 492
Fsp4HI	GCNGC	5 cut(s)	72, 96, 168, 438, 441
FspBI	CTAG	2 cut(s)	173, 183
GluI	GCNGC	5 cut(s)	72, 96, 168, 438, 441
GsaI	CCCAGC	1 cut(s)	487
GsuI	CTGGAG	2 cut(s)	98, 487
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	6 cut(s)	25, 37, 83, 99, 130, 330
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	116, 268
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	133, 146, 293
HpaII	CCGG	6 cut(s)	25, 37, 83, 99, 130, 330
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	22, 44
Hpy188III	TCNNGA	3 cut(s)	137, 150, 377
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	3 cut(s)	95, 167, 388
HpyAV	CCTTC	1 cut(s)	519
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	74, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 71, 173
HpyF3I	CTNAG	4 cut(s)	138, 310, 444, 521
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	116, 268
Kzo9I	GATC	3 cut(s)	17, 379, 403
LmnI	GCTCC	2 cut(s)	62, 79
Lsp1109I	GCAGC	5 cut(s)	58, 82, 154, 424, 452
LweI	GCATC	2 cut(s)	470, 497
MaeI	CTAG	2 cut(s)	173, 183
MaeII	ACGT	1 cut(s)	90
MalI	GATC	3 cut(s)	19, 381, 405
MboI	GATC	3 cut(s)	17, 379, 403
MboII	GAAGA	4 cut(s)	27, 248, 460, 548
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	3 cut(s)	17, 379, 403
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	3 cut(s)	57, 408, 451
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	8 cut(s)	133, 246, 262, 279, 307, 332, 384, 394
Mox20I	TGGCCA	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	543, 565
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	6 cut(s)	25, 37, 83, 99, 130, 330
MspR9I	CCNGG	6 cut(s)	26, 38, 355, 365, 539, 561
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	4 cut(s)	355, 365, 539, 561
MwoI	GCNNNNNNNGC	3 cut(s)	62, 71, 173
NciI	CCSGG	2 cut(s)	26, 38
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	17, 379, 403
NlaIII	CATG	2 cut(s)	116, 268
NlaIV	GGNNCC	2 cut(s)	81, 381
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	146, 293
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	5 cut(s)	73, 97, 169, 439, 442
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	4 cut(s)	353, 363, 537, 559
PspFI	CCCAGC	1 cut(s)	483
PspGI	CCWGG	4 cut(s)	353, 363, 537, 559
PspN4I	GGNNCC	2 cut(s)	81, 381
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	2 cut(s)	71, 289
PsuI	RGATCY	3 cut(s)	17, 379, 403
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	159, 419
RsaNI	GTAC	2 cut(s)	158, 418
SaqAI	TTAA	2 cut(s)	543, 565
SatI	GCNGC	5 cut(s)	72, 96, 168, 438, 441
Sau3AI	GATC	3 cut(s)	17, 379, 403
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	2 cut(s)	159, 419
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	6 cut(s)	26, 38, 355, 365, 539, 561
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	470, 497
SfcI	CTRYAG	2 cut(s)	6, 438
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	57, 408, 451
SsiI	CCGC	2 cut(s)	247, 477
SspMI	CTAG	2 cut(s)	173, 183
StyD4I	CCNGG	6 cut(s)	24, 36, 353, 363, 537, 559
StyI	CCWWGG	2 cut(s)	264, 494
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	386
TasI	AATT	3 cut(s)	57, 408, 451
TatI	WGTACW	2 cut(s)	157, 417
TfiI	GAWTC	2 cut(s)	146, 293
Tru1I	TTAA	2 cut(s)	543, 565
Tru9I	TTAA	2 cut(s)	543, 565
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	5 cut(s)	71, 95, 167, 437, 440
TspGWI	ACGGA	2 cut(s)	197, 372
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	2 cut(s)	173, 183
ZraI	GACGTC	1 cut(s)	91
ZrmI	AGTACT	2 cut(s)	159, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.