Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Reverse (-)

10346201 .. 10347330

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAATGACACGGTCTGTTGTGGCGGTTCTGATGGCTGCACTATTGGTAGCCTTCACGAACGCAGCCTCCTCCGGCACACAATCTCAATCATCATCAAGACCAGCTGCATCACCTGATAATGAGGGTGCTAAACCACCTACTTCAGCAACTCCAGCACCTGCACCTGCTGCACCAACAAAAACTCCTCCACCTTCTCATGGGAACAATGCTCCAAAGCCTACTCCTGCTTCTAAGACTTCACCTTCTAGCTCCAAGACATCACCAGAAGCTGCTCCAAAAACTTCCTTGGAGTCTCCACCATCCCCAACATTACCTACCTCTGAGGTAGTTCCTCCCACTACAGCCTCTGCACCTGGCCCATCGAGTGAAGGTGTTGTTTTGAACAAGATCAACGTAGCCGGCTCGGTTGCCCTTGGAGTTGTTGCCGCTGTCTGGTTATACGAGAGAAAATGGGGAAAGCTGCCAAATCAAATTTCTGCTCGGATTTTGCCATTTCAGTGTGAAATTCTTCCATTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

17.6

Weight (kDa)

9.84

Isoelectric Point (pI)

72.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	169, 175
Acc36I	ACCTGC	2 cut(s)	169, 175
AciI	CCGC	2 cut(s)	26, 429
AcsI	RAATTY	2 cut(s)	474, 507
AcuI	CTGAAG	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	200, 435
AgsI	TTSAA	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	107, 252, 272, 463
AluI	AGCT	4 cut(s)	107, 252, 272, 463
Alw26I	GTCTC	1 cut(s)	300
AlwNI	CAGNNNCTG	3 cut(s)	161, 272, 350
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	6 cut(s)	38, 65, 107, 170, 272, 463
ApoI	RAATTY	2 cut(s)	474, 507
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	105, 234, 255
BbvI	GCAGC	6 cut(s)	25, 77, 94, 157, 259, 450
BccI	CCATC	3 cut(s)	28, 310, 370
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	342
BfuAI	ACCTGC	2 cut(s)	169, 175
BisI	GCNGC	7 cut(s)	39, 66, 108, 171, 273, 429, 464
BlsI	GCNGC	7 cut(s)	40, 67, 109, 172, 274, 430, 465
Bme1390I	CCNGG	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	288, 415
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 435
Bse118I	RCCGGY	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	288, 415
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	200, 435
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	61, 177
BseXI	GCAGC	6 cut(s)	25, 77, 94, 157, 259, 450
BsgI	GTGCAG	4 cut(s)	24, 147, 156, 336
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	75, 402
BslI	CCNNNNNNNGG	2 cut(s)	200, 435
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	390
BspACI	CCGC	2 cut(s)	26, 429
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	316
BspMI	ACCTGC	2 cut(s)	169, 175
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	288, 415
BssMI	GATC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	288, 415
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	234, 324
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 170
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	6 cut(s)	25, 77, 94, 157, 259, 450
BsuRI	GGCC	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	506
BveI	ACCTGC	2 cut(s)	169, 175
Cac8I	GCNNGC	1 cut(s)	403
CaiI	CAGNNNCTG	3 cut(s)	161, 272, 350
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	359
CviAII	CATG	1 cut(s)	200
DdeI	CTNAG	2 cut(s)	234, 324
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	288, 415
Eco57I	CTGAAG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	288, 415
ErhI	CCWWGG	2 cut(s)	288, 415
FaeI	CATG	1 cut(s)	203
FaiI	YATR	2 cut(s)	201, 442
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	7 cut(s)	39, 66, 108, 171, 273, 429, 464
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	7 cut(s)	39, 66, 108, 171, 273, 429, 464
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	7 cut(s)	39, 66, 108, 171, 273, 429, 464
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	2 cut(s)	75, 402
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	2 cut(s)	75, 402
HphI	GGTGA	3 cut(s)	105, 234, 255
Hpy188I	TCNGA	3 cut(s)	33, 325, 486
Hpy188III	TCNNGA	2 cut(s)	58, 99
HpyAV	CCTTC	4 cut(s)	64, 204, 255, 365
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	41, 110, 164, 173, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 170
HpyF3I	CTNAG	2 cut(s)	234, 324
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	203
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	3 cut(s)	217, 257, 280
Lsp1109I	GCAGC	6 cut(s)	25, 77, 94, 157, 259, 450
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	396
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	1 cut(s)	503
MluCI	AATT	2 cut(s)	474, 507
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	8 cut(s)	79, 82, 118, 198, 319, 331, 345, 358
MroNI	GCCGGC	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	510
MslI	CAYNNNNRTG	2 cut(s)	499, 520
MspA1I	CMGCKG	2 cut(s)	107, 431
MspI	CCGG	2 cut(s)	75, 402
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	155, 170
NaeI	GCCGGC	1 cut(s)	403
NdeII	GATC	1 cut(s)	390
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	1 cut(s)	203
PaqCI	CACCTGC	2 cut(s)	169, 175
PdiI	GCCGGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	510
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	7 cut(s)	40, 67, 109, 172, 274, 430, 465
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	359
PstNI	CAGNNNCTG	3 cut(s)	161, 272, 350
PsyI	GACNNNGTC	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	499, 520
SatI	GCNGC	7 cut(s)	39, 66, 108, 171, 273, 429, 464
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	499, 520
Sse9I	AATT	2 cut(s)	474, 507
SsiI	CCGC	2 cut(s)	26, 429
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	288, 415
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	365
TasI	AATT	2 cut(s)	474, 507
TauI	GCSGC	1 cut(s)	431
TscAI	CASTG	1 cut(s)	506
TseI	GCWGC	6 cut(s)	38, 65, 107, 170, 272, 463
TspRI	CASTG	1 cut(s)	506
Tth111I	GACNNNGTC	1 cut(s)	13
XapI	RAATTY	2 cut(s)	474, 507
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.