Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

9791710 .. 9792328

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G066000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCTCGATCCAACGCTGTCGTTTTTGTGCTAATGGCTGCCCTCTTGGTGGCCTCAACAAGGGCACAATCCCCTGCATCTTCCCCAGCCAAGTCCCCTGCCTCTGCCCCTTCTCCTTTGAGCACTCCACCCGCAGCCGCTCCTTCTCCTTTGCGCACTCCACCCGCTGCTTCACCTTCTCCTTTGAGTACCTCACCTTCTCCTTCGGGCACTCCACCCTCGGCTGCTCCTTCTACATCTCCGGTCGTTCACTCTCCACCTTCTCCCCCATCGTCTTCTCCCGAATCTCCAGCCACCTCTCCCCCTTCTTCAGTCTCGGGATCCCCCGCCGAAGCTCCTGCACCCAACGGTGCTTTTTTAAACAGGTTGTCCTTCGTGGGATCCGTGGCCGCTGGGGTTTTCGCTGCCGCCATGGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

13.36

Weight (kDa)

11.54

Isoelectric Point (pI)

116.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	6 cut(s)	132, 138, 165, 327, 390, 408
AclWI	GGATC	5 cut(s)	3, 315, 328, 375, 388
AcoI	YGGCCR	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	49, 60
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	5 cut(s)	3, 315, 328, 375, 388
Ama87I	CYCGRG	1 cut(s)	316
AoxI	GGCC	2 cut(s)	51, 387
ApeKI	GCWGC	5 cut(s)	38, 134, 167, 224, 404
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	165, 186
AvaI	CYCGRG	1 cut(s)	316
BaeGI	GKGCMC	2 cut(s)	67, 212
BamHI	GGATCC	2 cut(s)	320, 380
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	5 cut(s)	25, 146, 154, 211, 391
BccI	CCATC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcoDI	GTCTC	1 cut(s)	319
BisI	GCNGC	8 cut(s)	39, 135, 138, 168, 225, 390, 405, 408
BlsI	GCNGC	8 cut(s)	40, 136, 139, 169, 226, 391, 406, 409
BmeT110I	CYCGRG	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	322, 382
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	219, 384, 411
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 60
BseDI	CCNNGG	3 cut(s)	219, 384, 411
BseLI	CCNNNNNNNGG	2 cut(s)	49, 60
BseSI	GKGCMC	2 cut(s)	67, 212
BseXI	GCAGC	5 cut(s)	25, 146, 154, 211, 391
BseYI	CCCAGC	2 cut(s)	85, 392
BsgI	GTGCAG	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	53, 389
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	49, 60
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	53, 389
BsoBI	CYCGRG	1 cut(s)	316
Bsp1286I	GDGCHC	3 cut(s)	67, 125, 212
Bsp143I	GATC	3 cut(s)	8, 320, 380
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	6 cut(s)	132, 138, 165, 327, 390, 408
BspANI	GGCC	2 cut(s)	53, 389
BspLI	GGNNCC	2 cut(s)	322, 382
BspPI	GGATC	5 cut(s)	3, 315, 328, 375, 388
BsrBI	CCGCTC	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	219, 384, 411
BssMI	GATC	3 cut(s)	8, 320, 380
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	350
BstDSI	CCRYGG	2 cut(s)	384, 411
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	11, 323, 383
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	8, 320, 380
BstMCI	CGRYCG	1 cut(s)	246
BstSLI	GKGCMC	2 cut(s)	67, 212
BstV1I	GCAGC	5 cut(s)	25, 146, 154, 211, 391
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	320, 380
BstYI	RGATCY	2 cut(s)	320, 380
BsuRI	GGCC	2 cut(s)	53, 389
BtgI	CCRYGG	2 cut(s)	384, 411
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	9 cut(s)	5, 38, 53, 89, 137, 224, 293, 335, 389
CviKI_1	RGCY	9 cut(s)	5, 38, 53, 89, 137, 224, 293, 335, 389
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	3 cut(s)	10, 322, 382
DpnII	GATC	3 cut(s)	8, 320, 380
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	415
FaiI	YATR	2 cut(s)	413, 419
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	411
FauI	CCCGC	3 cut(s)	139, 172, 334
Fnu4HI	GCNGC	8 cut(s)	39, 135, 138, 168, 225, 390, 405, 408
Fsp4HI	GCNGC	8 cut(s)	39, 135, 138, 168, 225, 390, 405, 408
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	8 cut(s)	39, 135, 138, 168, 225, 390, 405, 408
GsaI	CCCAGC	2 cut(s)	89, 396
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	53, 389
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	165, 186
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	281, 318
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	9 cut(s)	120, 153, 186, 207, 213, 240, 270, 315, 382
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	2 cut(s)	77, 341
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	8, 320, 380
LmnI	GCTCC	3 cut(s)	145, 232, 340
LpnPI	CCDG	8 cut(s)	87, 99, 111, 255, 303, 349, 351, 378
Lsp1109I	GCAGC	5 cut(s)	25, 146, 154, 211, 391
LweI	GCATC	1 cut(s)	86
MalI	GATC	3 cut(s)	10, 322, 382
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	3 cut(s)	8, 320, 380
MboII	GAAGA	3 cut(s)	72, 267, 300
MflI	RGATCY	2 cut(s)	320, 380
MhlI	GDGCHC	3 cut(s)	67, 125, 212
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	53, 64, 112, 202, 229, 307
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	167, 392
MspI	CCGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	8, 320, 380
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	2 cut(s)	322, 382
NmeAIII	GCCGAG	1 cut(s)	200
NsbI	TGCGCA	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	40, 136, 139, 169, 226, 391, 406, 409
PspFI	CCCAGC	2 cut(s)	85, 392
PspN4I	GGNNCC	2 cut(s)	322, 382
PsuI	RGATCY	2 cut(s)	320, 380
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	8 cut(s)	39, 135, 138, 168, 225, 390, 405, 408
Sau3AI	GATC	3 cut(s)	8, 320, 380
SduI	GDGCHC	3 cut(s)	67, 125, 212
SetI	ASST	7 cut(s)	178, 194, 199, 262, 299, 337, 368
SfaNI	GCATC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	416
SsiI	CCGC	6 cut(s)	132, 138, 165, 327, 390, 408
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	7
TauI	GCSGC	3 cut(s)	140, 392, 410
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TseI	GCWGC	5 cut(s)	38, 134, 167, 224, 404
TspGWI	ACGGA	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.