Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Reverse (-)

9712720 .. 9713142

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G065600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCTCAATCCAACGCCGTCGTTTTGGTGCTAATGGCTGCCCTCTTGGTGGCCTCAACAAGGGCACAATCCCCTGCATCTTCCCCAGCCAAGTCCCCTGCATCTGCCCCTTCTCCTTTGAGCACTCCACCCGCCGCCGCTCCTTCTCCTTTGAGCACTCCACCCGCTGCTTCACCTTCTCCTTCGAGTACCTCACCTTCTCCTTCGGGCACTCCACCCTCGGCTGCTCCTTCTACATCTCCGGTCGCAGACTCTCCACCTTCTCCCCCATCGTCTTCTCCTGAATCTCCCGCCACCTCTCCCCCTTCTTCGGTCTCGGGATCCCCCACAGAATCTCCTGCACCTAACGGTGCAGTTTTGAACAGGTTCTCCTTCGCTGGATCCGTGGCCGTTGGTGTTTTCGCTGCCGCCATGCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

13.2

Weight (kDa)

5.94

Isoelectric Point (pI)

121.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	6 cut(s)	132, 135, 138, 165, 291, 408
AclWI	GGATC	4 cut(s)	315, 328, 375, 388
AcoI	YGGCCR	1 cut(s)	387
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	3 cut(s)	49, 60, 310
AgsI	TTSAA	1 cut(s)	361
AloI	GAACNNNNNNTCC	2 cut(s)	353, 385
Alw21I	GWGCWC	2 cut(s)	125, 158
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	4 cut(s)	315, 328, 375, 388
Ama87I	CYCGRG	1 cut(s)	316
AoxI	GGCC	2 cut(s)	51, 387
ApeKI	GCWGC	4 cut(s)	38, 167, 224, 404
Asp700I	GAANNNNTTC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	165, 186
AvaI	CYCGRG	1 cut(s)	316
BaeGI	GKGCMC	2 cut(s)	67, 212
BamHI	GGATCC	2 cut(s)	320, 380
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	125, 158
BbvI	GCAGC	4 cut(s)	25, 154, 211, 391
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	2 cut(s)	2, 374
BcoDI	GTCTC	1 cut(s)	319
BisI	GCNGC	7 cut(s)	39, 135, 138, 168, 225, 405, 408
BlsI	GCNGC	7 cut(s)	40, 136, 139, 169, 226, 406, 409
BmeT110I	CYCGRG	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	322, 382
BmsI	GCATC	2 cut(s)	86, 110
BpiI	GAAGAC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	219, 384
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	4 cut(s)	319, 349, 353, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 60, 310
BseDI	CCNNGG	2 cut(s)	219, 384
BseLI	CCNNNNNNNGG	3 cut(s)	49, 60, 310
BseSI	GKGCMC	2 cut(s)	67, 212
BseXI	GCAGC	4 cut(s)	25, 154, 211, 391
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	2 cut(s)	324, 372
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	53, 389
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	125, 158
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	49, 60, 310
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	53, 389
Bso31I	GGTCTC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	316
Bsp1286I	GDGCHC	4 cut(s)	67, 125, 158, 212
Bsp143I	GATC	2 cut(s)	320, 380
BspACI	CCGC	6 cut(s)	132, 135, 138, 165, 291, 408
BspANI	GGCC	2 cut(s)	53, 389
BspLI	GGNNCC	2 cut(s)	322, 382
BspPI	GGATC	4 cut(s)	315, 328, 375, 388
BspTNI	GGTCTC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	219, 384
BssMI	GATC	2 cut(s)	320, 380
Bst4CI	ACNGT	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	323, 383
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	320, 380
BstMCI	CGRYCG	1 cut(s)	246
BstSLI	GKGCMC	2 cut(s)	67, 212
BstV1I	GCAGC	4 cut(s)	25, 154, 211, 391
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	320, 380
BstYI	RGATCY	2 cut(s)	320, 380
BsuRI	GGCC	2 cut(s)	53, 389
BtgI	CCRYGG	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	6 cut(s)	5, 38, 53, 89, 224, 389
CviKI_1	RGCY	6 cut(s)	5, 38, 53, 89, 224, 389
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	2 cut(s)	322, 382
DpnII	GATC	2 cut(s)	320, 380
EaeI	YGGCCR	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	415
FaiI	YATR	2 cut(s)	413, 419
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	411
FauI	CCCGC	3 cut(s)	139, 172, 298
Fnu4HI	GCNGC	7 cut(s)	39, 135, 138, 168, 225, 405, 408
Fsp4HI	GCNGC	7 cut(s)	39, 135, 138, 168, 225, 405, 408
GluI	GCNGC	7 cut(s)	39, 135, 138, 168, 225, 405, 408
GsaI	CCCAGC	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	53, 389
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	1 cut(s)	415
HinfI	GANTC	3 cut(s)	251, 284, 332
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	165, 186
Hpy188III	TCNNGA	2 cut(s)	281, 318
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	77, 101, 341, 353
Hsp92II	CATG	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	320, 380
LmnI	GCTCC	2 cut(s)	145, 232
LpnPI	CCDG	8 cut(s)	87, 99, 111, 255, 294, 349, 351, 363
Lsp1109I	GCAGC	4 cut(s)	25, 154, 211, 391
LweI	GCATC	2 cut(s)	86, 110
MalI	GATC	2 cut(s)	322, 382
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	2 cut(s)	320, 380
MboII	GAAGA	3 cut(s)	72, 267, 300
MflI	RGATCY	2 cut(s)	320, 380
MhlI	GDGCHC	4 cut(s)	67, 125, 158, 212
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	5 cut(s)	53, 64, 202, 229, 307
MroXI	GAANNNNTTC	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	320, 380
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	2 cut(s)	322, 382
NmeAIII	GCCGAG	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	284, 332
PkrI	GCNGC	7 cut(s)	40, 136, 139, 169, 226, 406, 409
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	322, 382
PsuI	RGATCY	2 cut(s)	320, 380
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	416
SatI	GCNGC	7 cut(s)	39, 135, 138, 168, 225, 405, 408
Sau3AI	GATC	2 cut(s)	320, 380
SchI	GAGTC	1 cut(s)	245
SduI	GDGCHC	4 cut(s)	67, 125, 158, 212
SetI	ASST	7 cut(s)	178, 194, 199, 262, 299, 346, 368
SfaNI	GCATC	2 cut(s)	86, 110
SmiMI	CAYNNNNRTG	1 cut(s)	416
SsiI	CCGC	6 cut(s)	132, 135, 138, 165, 291, 408
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	185
TaqII	GACCGA	1 cut(s)	301
TauI	GCSGC	3 cut(s)	137, 140, 410
TfiI	GAWTC	2 cut(s)	284, 332
TseI	GCWGC	4 cut(s)	38, 167, 224, 404
TspGWI	ACGGA	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.