Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001679.1

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Reverse (-)

85471 .. 85992

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001679.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggcacgatctgttgtggtgttcctaatggttgcactcttggtagcctccttgaatgcacaatctccatcatcttcaccagctgcatccccgaatgcggctgctaaaacacctaatgcagctgctaccgcacctccaccatcaacatctcctacgcctactatttcaccttcttcatcgaagacagctcctgcggctactccttctcaagcgaagactacaccagaggctgctccaactgcttccaagacttcaccacaagctgcccctacttcttccaagacttcaccacaagctgctccaacaacttccccaagttcgtcagatgctactccttctaccgcacccgttgctagctctccaccatctcctccatcccctacctctgaatctcaggcaattcctcccactacagactctgtaccaactgatggggctggtggggctggtggggctggtggggcaccttccccatccaacaatggtatcgttttgagcatctcctccatcccctacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

16.34

Weight (kDa)

8.1

Isoelectric Point (pI)

91.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	4 cut(s)	98, 129, 194, 342
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	97, 431
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	6 cut(s)	83, 122, 188, 263, 296, 357
AluI	AGCT	6 cut(s)	83, 122, 188, 263, 296, 357
AlwNI	CAGNNNCTG	3 cut(s)	191, 230, 419
ApeKI	GCWGC	7 cut(s)	83, 101, 119, 122, 230, 263, 296
AsuHPI	GGTGA	4 cut(s)	69, 159, 246, 279
AsuNHI	GCTAGC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	466
BaeI	ACNNNNGTAYC	2 cut(s)	469, 502
BanI	GGYRCC	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	188, 221
BbvI	GCAGC	7 cut(s)	70, 88, 109, 131, 217, 250, 283
BccI	CCATC	7 cut(s)	76, 148, 373, 382, 425, 481, 515
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	9 cut(s)	84, 99, 102, 120, 123, 195, 231, 264, 297
BlsI	GCNGC	9 cut(s)	85, 100, 103, 121, 124, 196, 232, 265, 298
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	3 cut(s)	95, 316, 507
BmtI	GCTAGC	1 cut(s)	357
BpiI	GAAGAC	2 cut(s)	188, 221
BpuEI	CTTGAG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 431
BseGI	GGATG	4 cut(s)	86, 374, 473, 507
BseLI	CCNNNNNNNGG	2 cut(s)	97, 431
BseMII	CTCAG	1 cut(s)	407
BseRI	GAGGAG	2 cut(s)	360, 493
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	7 cut(s)	70, 88, 109, 131, 217, 250, 283
BshNI	GGYRCC	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	97, 431
BsmI	GAATGC	2 cut(s)	61, 100
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	4 cut(s)	98, 129, 194, 342
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	463
BssMI	GATC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	4 cut(s)	86, 374, 473, 507
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 194, 239, 350, 443, 452, 461
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	7 cut(s)	70, 88, 109, 131, 217, 250, 283
BstV2I	GAAGAC	2 cut(s)	188, 221
BtsCI	GGATG	4 cut(s)	86, 374, 473, 507
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	3 cut(s)	191, 230, 419
Csp6I	GTAC	1 cut(s)	422
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Fnu4HI	GCNGC	9 cut(s)	84, 99, 102, 120, 123, 195, 231, 264, 297
FokI	GGATG	4 cut(s)	73, 361, 460, 494
Fsp4HI	GCNGC	9 cut(s)	84, 99, 102, 120, 123, 195, 231, 264, 297
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	9 cut(s)	84, 99, 102, 120, 123, 195, 231, 264, 297
HinfI	GANTC	2 cut(s)	389, 416
HphI	GGTGA	4 cut(s)	69, 159, 246, 279
Hpy188I	TCNGA	3 cut(s)	325, 388, 521
HpyAV	CCTTC	4 cut(s)	180, 213, 345, 477
HpyCH4V	TGCA	4 cut(s)	35, 59, 86, 119
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 194, 239, 350, 443, 452, 461
HpyF3I	CTNAG	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	193, 238, 304
LpnPI	CCDG	7 cut(s)	93, 204, 237, 380, 423, 432, 441
Lsp1109I	GCAGC	7 cut(s)	70, 88, 109, 131, 217, 250, 283
LweI	GCATC	3 cut(s)	95, 316, 507
MaeI	CTAG	1 cut(s)	354
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	5 cut(s)	66, 165, 193, 226, 267
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	3 cut(s)	260, 326, 501
MnlI	CCTC	7 cut(s)	58, 144, 220, 381, 394, 414, 514
MspA1I	CMGCKG	2 cut(s)	83, 122
Mva1269I	GAATGC	2 cut(s)	61, 100
MwoI	GCNNNNNNNGC	7 cut(s)	128, 194, 239, 350, 443, 452, 461
NdeII	GATC	1 cut(s)	8
NheI	GCTAGC	1 cut(s)	353
NlaIV	GGNNCC	1 cut(s)	465
PctI	GAATGC	2 cut(s)	61, 100
PfeI	GAWTC	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	9 cut(s)	85, 100, 103, 121, 124, 196, 232, 265, 298
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	465
PstNI	CAGNNNCTG	3 cut(s)	191, 230, 419
PvuII	CAGCTG	2 cut(s)	83, 122
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SatI	GCNGC	9 cut(s)	84, 99, 102, 120, 123, 195, 231, 264, 297
Sau3AI	GATC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	3 cut(s)	95, 316, 507
SfcI	CTRYAG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	98, 129, 194, 342
SspMI	CTAG	1 cut(s)	354
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	399
TauI	GCSGC	2 cut(s)	101, 197
TfiI	GAWTC	1 cut(s)	389
TseI	GCWGC	7 cut(s)	83, 101, 119, 122, 230, 263, 296
TspDTI	ATGAA	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	431
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.