Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

33672480 .. 33673208

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAATGGCACGATCTGTTGTGGTGTTCCTAATGGCTGCACTCTTGGTAGCCTCCTTGAATGCACAATCTCCATCATCTTCACCAGCTGCATCCCCGAATGCGGCTGCTAAAACACCTAATGCAGCTGCTACCGCACCTCCACCATCAACATCTCCTACGCCTACTGTTTCACCTTCTTCATCGAAGACAGCTCCTGCGGCTACTCCTTCTCAAGCGAAGACTACACCAGAGGCTGCTCCAACTGCTTCCAAGACTTCACCACAAGCTGCCCCTACTTCTTCCAAGACTTCACCACAAGCTGCTCCAACAACTTCCCCAAGTTTGTCAGATGCTACTCCTTCTACCGCACCCGTTGCTAGCTCTCCACCATCCCCTACCTCTGAATCTCAGGCAATTCCTCCCACTACAGACTCTGTACCAACTGATGGGGCAAGTGGGGCACCTTCCCCATCCAACAATGGTATGGTTTTGAACAAGATTAACGTAGCCGGCTCGGTTGCCCTCGGAGTTGTTGCAGCTGTCTTAGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

16.97

Weight (kDa)

9.3

Isoelectric Point (pI)

84.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	428
AciI	CCGC	4 cut(s)	104, 135, 200, 348
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	103, 428
AgsI	TTSAA	2 cut(s)	61, 475
AluBI	AGCT	7 cut(s)	89, 128, 194, 269, 302, 363, 521
AluI	AGCT	7 cut(s)	89, 128, 194, 269, 302, 363, 521
AlwNI	CAGNNNCTG	3 cut(s)	197, 236, 416
ApeKI	GCWGC	9 cut(s)	38, 89, 107, 125, 128, 236, 269, 302, 518
AsuHPI	GGTGA	4 cut(s)	75, 165, 252, 285
AsuNHI	GCTAGC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	442
BbsI	GAAGAC	2 cut(s)	194, 227
BbvI	GCAGC	9 cut(s)	25, 76, 94, 115, 137, 223, 256, 289, 530
BccI	CCATC	5 cut(s)	82, 154, 379, 422, 460
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	444
BmsI	GCATC	2 cut(s)	101, 322
BmtI	GCTAGC	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	194, 227
BpuEI	CTTGAG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 428
Bse118I	RCCGGY	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	3 cut(s)	92, 371, 452
BseLI	CCNNNNNNNGG	2 cut(s)	103, 428
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	404
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	9 cut(s)	25, 76, 94, 115, 137, 223, 256, 289, 530
BsgI	GTGCAG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	492
BslI	CCNNNNNNNGG	2 cut(s)	103, 428
BsmI	GAATGC	2 cut(s)	67, 106
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	4 cut(s)	104, 135, 200, 348
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	444
BspOI	GCTAGC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	361, 493
BstDEI	CTNAG	2 cut(s)	390, 526
BstF5I	GGATG	3 cut(s)	92, 371, 452
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 200, 245, 356, 440
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	9 cut(s)	25, 76, 94, 115, 137, 223, 256, 289, 530
BstV2I	GAAGAC	2 cut(s)	194, 227
BtsCI	GGATG	3 cut(s)	92, 371, 452
Cac8I	GCNNGC	2 cut(s)	361, 493
CaiI	CAGNNNCTG	3 cut(s)	197, 236, 416
Cfr10I	RCCGGY	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	419
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	2 cut(s)	390, 526
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
FaiI	YATR	2 cut(s)	467, 533
FokI	GGATG	3 cut(s)	79, 358, 439
FspBI	CTAG	1 cut(s)	360
HapII	CCGG	1 cut(s)	492
HinfI	GANTC	2 cut(s)	386, 413
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	4 cut(s)	75, 165, 252, 285
Hpy188I	TCNGA	3 cut(s)	331, 385, 509
HpyAV	CCTTC	4 cut(s)	186, 219, 351, 456
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	5 cut(s)	41, 65, 92, 125, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 200, 245, 356, 440
HpyF3I	CTNAG	2 cut(s)	390, 526
HpySE526I	ACGT	1 cut(s)	486
KroI	GCCGGC	1 cut(s)	491
KroNI	GCCGGC	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	3 cut(s)	199, 244, 310
LpnPI	CCDG	5 cut(s)	99, 210, 243, 377, 505
Lsp1109I	GCAGC	9 cut(s)	25, 76, 94, 115, 137, 223, 256, 289, 530
LweI	GCATC	2 cut(s)	101, 322
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	486
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	5 cut(s)	72, 171, 199, 232, 273
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	3 cut(s)	266, 332, 480
MnlI	CCTC	6 cut(s)	64, 150, 226, 391, 411, 515
MroNI	GCCGGC	1 cut(s)	491
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	3 cut(s)	89, 128, 521
MspI	CCGG	1 cut(s)	492
Mva1269I	GAATGC	2 cut(s)	67, 106
MwoI	GCNNNNNNNGC	5 cut(s)	134, 200, 245, 356, 440
NaeI	GCCGGC	1 cut(s)	493
NdeII	GATC	1 cut(s)	14
NgoMIV	GCCGGC	1 cut(s)	491
NheI	GCTAGC	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	444
PctI	GAATGC	2 cut(s)	67, 106
PdiI	GCCGGC	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	428
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	444
PstNI	CAGNNNCTG	3 cut(s)	197, 236, 416
PvuII	CAGCTG	3 cut(s)	89, 128, 521
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	483
Sau3AI	GATC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	101, 322
SfcI	CTRYAG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	4 cut(s)	104, 135, 200, 348
SspMI	CTAG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	396
TauI	GCSGC	2 cut(s)	107, 203
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseI	GCWGC	9 cut(s)	38, 89, 107, 125, 128, 236, 269, 302, 518
TspDTI	ATGAA	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.