Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

31201841 .. 31202563

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCAATGGCACGATCTGTTGTGGTGTTCCTAATGGCTGCACTCTTGGTAGCCTCCTCGAATGCACAATCTCCATCATCTTCACCAGCTGCATCCCCGAATGCGGCTGCTAAAACACCTAATGCGGCTGCTACCGCACCTCCACCATCAACATCTCCTACGCCTACTGTTTCACCTTCTTCATCGAAGACAGCTCCTGCGGCTACTCCTTCTCAAGCGAAGACTTCACCAGAGGCTGCTCCAACTGCTTCCAAGACTTCACCACAAGCTGCCCCTACTTCTTCCAAGACTTCACCACAAGTTGCTCCAACAACTTCCCCAAGTTCGTCAGATGCTACTCCTTCTACTGCACCCGTTGCTAGCTCTCCACCATCTCCTCCATCCCCTACCTCTGAATCTCAGGCAATTCCTCCCACTACAGACTCTGTACCAACTGATGGGGCAGGTGGGGCACCTTCCCCATCCAACAATGGTATGGTTTTGAACAAGATCAATGTAGCCGGCTTGGTTGCCCTTGGAGTTGTTACAGCTGTCTTGGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

17.24

Weight (kDa)

9.3

Isoelectric Point (pI)

92.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	4 cut(s)	104, 125, 135, 200
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	103, 437
AgsI	TTSAA	1 cut(s)	484
AluBI	AGCT	5 cut(s)	89, 194, 269, 363, 530
AluI	AGCT	5 cut(s)	89, 194, 269, 363, 530
AlwNI	CAGNNNCTG	3 cut(s)	197, 236, 425
ApeKI	GCWGC	6 cut(s)	38, 89, 107, 128, 236, 269
AsuHPI	GGTGA	5 cut(s)	75, 165, 219, 252, 285
AsuNHI	GCTAGC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	451
BbsI	GAAGAC	2 cut(s)	194, 227
BbvI	GCAGC	6 cut(s)	25, 76, 94, 115, 223, 256
BccI	CCATC	6 cut(s)	82, 154, 379, 388, 431, 469
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	434
BisI	GCNGC	9 cut(s)	39, 90, 105, 108, 126, 129, 201, 237, 270
BlsI	GCNGC	9 cut(s)	40, 91, 106, 109, 127, 130, 202, 238, 271
BmiI	GGNNCC	1 cut(s)	453
BmsI	GCATC	2 cut(s)	101, 322
BmtI	GCTAGC	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	194, 227
BpuEI	CTTGAG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 437
Bse118I	RCCGGY	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	3 cut(s)	92, 380, 461
BseLI	CCNNNNNNNGG	2 cut(s)	103, 437
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	46, 366
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	6 cut(s)	25, 76, 94, 115, 223, 256
BsgI	GTGCAG	2 cut(s)	24, 333
BshNI	GGYRCC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	103, 437
BsmI	GAATGC	2 cut(s)	67, 106
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	14, 489
BspACI	CCGC	4 cut(s)	104, 125, 135, 200
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	434
BspOI	GCTAGC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	2 cut(s)	14, 489
BssT1I	CCWWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	361, 502
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	3 cut(s)	92, 380, 461
BstKTI	GATC	2 cut(s)	17, 492
BstMBI	GATC	2 cut(s)	14, 489
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 200, 245, 356, 449
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	6 cut(s)	25, 76, 94, 115, 223, 256
BstV2I	GAAGAC	2 cut(s)	194, 227
BtsCI	GGATG	3 cut(s)	92, 380, 461
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	2 cut(s)	361, 502
CaiI	CAGNNNCTG	3 cut(s)	197, 236, 425
Cfr10I	RCCGGY	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	428
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	16, 491
DpnII	GATC	2 cut(s)	14, 489
Eco130I	CCWWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	514
FaiI	YATR	2 cut(s)	476, 542
Fnu4HI	GCNGC	9 cut(s)	39, 90, 105, 108, 126, 129, 201, 237, 270
FokI	GGATG	3 cut(s)	79, 367, 448
Fsp4HI	GCNGC	9 cut(s)	39, 90, 105, 108, 126, 129, 201, 237, 270
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	9 cut(s)	39, 90, 105, 108, 126, 129, 201, 237, 270
HapII	CCGG	1 cut(s)	501
HinfI	GANTC	2 cut(s)	395, 422
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	5 cut(s)	75, 165, 219, 252, 285
Hpy188I	TCNGA	2 cut(s)	331, 394
HpyAV	CCTTC	4 cut(s)	186, 219, 351, 465
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	41, 65, 92, 350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 200, 245, 356, 449
HpyF3I	CTNAG	1 cut(s)	399
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	14, 489
LmnI	GCTCC	3 cut(s)	199, 244, 310
LpnPI	CCDG	6 cut(s)	99, 210, 243, 386, 429, 514
Lsp1109I	GCAGC	6 cut(s)	25, 76, 94, 115, 223, 256
LweI	GCATC	2 cut(s)	101, 322
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	16, 491
MboI	GATC	2 cut(s)	14, 489
MboII	GAAGA	5 cut(s)	72, 171, 199, 232, 273
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	3 cut(s)	266, 332, 489
MnlI	CCTC	7 cut(s)	64, 67, 150, 226, 387, 400, 420
MroNI	GCCGGC	1 cut(s)	500
MspA1I	CMGCKG	2 cut(s)	89, 530
MspI	CCGG	1 cut(s)	501
Mva1269I	GAATGC	2 cut(s)	67, 106
MwoI	GCNNNNNNNGC	5 cut(s)	134, 200, 245, 356, 449
NaeI	GCCGGC	1 cut(s)	502
NdeII	GATC	2 cut(s)	14, 489
NgoMIV	GCCGGC	1 cut(s)	500
NheI	GCTAGC	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	453
PaqCI	CACCTGC	1 cut(s)	434
PctI	GAATGC	2 cut(s)	67, 106
PdiI	GCCGGC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	9 cut(s)	40, 91, 106, 109, 127, 130, 202, 238, 271
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	453
PstNI	CAGNNNCTG	3 cut(s)	197, 236, 425
PvuII	CAGCTG	2 cut(s)	89, 530
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SatI	GCNGC	9 cut(s)	39, 90, 105, 108, 126, 129, 201, 237, 270
Sau3AI	GATC	2 cut(s)	14, 489
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	101, 322
SfcI	CTRYAG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	4 cut(s)	104, 125, 135, 200
SspMI	CTAG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	59, 185
TasI	AATT	1 cut(s)	405
TauI	GCSGC	3 cut(s)	107, 128, 203
TfiI	GAWTC	1 cut(s)	395
TseI	GCWGC	6 cut(s)	38, 89, 107, 128, 236, 269
TspDTI	ATGAA	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.