Rh6DG171900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
29700754 .. 29702055
1302 bp
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UTR
Exon/CDS
Intron
Rh6DG171900.1

Sequence Viewer

Length: 546 bp
ATGGCAATGGCACGATCTGTTGTGGTGTTCCTAATGGCTGCACTCTTGGCAGCTTCCTTGAATGCACAATCTCCATCATCTTCACCAGCTGCATCCCCGAATGCGGCTGCTAAAACACCTAATGCAGCTGCTACCGCACCTCCACCATCAGCATCTCCTACGCCTACTGTTTCACCTTCTTCATCGAAGACCGCTCCTGCGGCTACTCCTTCTCAAGTGAAGACTACACCAGAGGCTGCTCCAACTGCTTCCAAGACTTCACCACAAGCTGCCCCTACTTCTTCCAAGACTTCACCACAAGCTGCTCCAACAACTTCCCCAAGTTCGTCAGATGCTACTCCTTCTACCGCACCCATTGCTAGCTCTCCACCATCTCCTCCATCCCCTACCTCTGAATCTCAGGCAATTCCTCCCACTATAGACTCTGTACCAACTGATGGGGCAGGTGGGGCACCTTCCCCATCCAACAATGGTATCGTTTTGAACAAGATCAACGTAGCCGGCTCGGTTGCCCTTGGAGTTGTTGCAGCTGTCTTAGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

17.17

Weight (kDa)

9.3

Isoelectric Point (pI)

87.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 437
AccBSI CCGCTC 1 cut(s) 194
AciI CCGC 5 cut(s) 104, 135, 192, 200, 348
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 2 cut(s) 103, 437
AgsI TTSAA 2 cut(s) 61, 484
AluBI AGCT 7 cut(s) 53, 89, 128, 269, 302, 363, 530
AluI AGCT 7 cut(s) 53, 89, 128, 269, 302, 363, 530
AlwNI CAGNNNCTG 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 75, 165, 252, 285
AsuNHI GCTAGC 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 454
BaeI ACNNNNGTAYC 2 cut(s) 457, 490
BanI GGYRCC 1 cut(s) 451
BbsI GAAGAC 2 cut(s) 194, 227
BccI CCATC 6 cut(s) 82, 154, 379, 388, 431, 469
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 453
BmsI GCATC 3 cut(s) 101, 161, 322
BmtI GCTAGC 1 cut(s) 363
BpiI GAAGAC 2 cut(s) 194, 227
BpuEI CTTGAG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 514
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 437
Bse118I RCCGGY 1 cut(s) 500
Bse3DI GCAATG 2 cut(s) 12, 354
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 3 cut(s) 92, 380, 461
BseLI CCNNNNNNNGG 2 cut(s) 103, 437
BseMI GCAATG 2 cut(s) 12, 354
BseMII CTCAG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 454
BsgI GTGCAG 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 451
BsiSI CCGG 1 cut(s) 501
BslI CCNNNNNNNGG 2 cut(s) 103, 437
BsmI GAATGC 2 cut(s) 67, 106
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 2 cut(s) 14, 489
BspACI CCGC 5 cut(s) 104, 135, 192, 200, 348
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 434
BspOI GCTAGC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 12, 354
BsrFI RCCGGY 1 cut(s) 500
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 2 cut(s) 14, 489
BssT1I CCWWGG 1 cut(s) 514
Bst4CI ACNGT 1 cut(s) 169
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 361, 502
BstDEI CTNAG 2 cut(s) 399, 535
BstF5I GGATG 3 cut(s) 92, 380, 461
BstKTI GATC 2 cut(s) 17, 492
BstMBI GATC 2 cut(s) 14, 489
BstMWI GCNNNNNNNGC 6 cut(s) 47, 134, 200, 245, 356, 449
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 454
BstV2I GAAGAC 2 cut(s) 194, 227
BtsCI GGATG 3 cut(s) 92, 380, 461
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 361, 502
CaiI CAGNNNCTG 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 500
Csp6I GTAC 1 cut(s) 428
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 2 cut(s) 399, 535
DpnI GATC 2 cut(s) 16, 491
DpnII GATC 2 cut(s) 14, 489
Eco130I CCWWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaiI YATR 2 cut(s) 419, 542
FokI GGATG 3 cut(s) 79, 367, 448
FspBI CTAG 1 cut(s) 360
HapII CCGG 1 cut(s) 501
HinfI GANTC 2 cut(s) 395, 422
HpaII CCGG 1 cut(s) 501
HphI GGTGA 4 cut(s) 75, 165, 252, 285
Hpy188I TCNGA 2 cut(s) 331, 394
HpyAV CCTTC 4 cut(s) 186, 219, 351, 465
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 5 cut(s) 41, 65, 92, 125, 527
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 134, 200, 245, 356, 449
HpyF3I CTNAG 2 cut(s) 399, 535
HpySE526I ACGT 1 cut(s) 495
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 14, 489
LmnI GCTCC 3 cut(s) 199, 244, 310
LpnPI CCDG 6 cut(s) 99, 210, 243, 386, 429, 514
LweI GCATC 3 cut(s) 101, 161, 322
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 495
MalI GATC 2 cut(s) 16, 491
MbiI CCGCTC 1 cut(s) 194
MboI GATC 2 cut(s) 14, 489
MboII GAAGA 5 cut(s) 72, 171, 199, 232, 273
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 1 cut(s) 405
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 3 cut(s) 266, 332, 489
MnlI CCTC 5 cut(s) 150, 226, 387, 400, 420
MroNI GCCGGC 1 cut(s) 500
MspA1I CMGCKG 3 cut(s) 89, 128, 530
MspI CCGG 1 cut(s) 501
Mva1269I GAATGC 2 cut(s) 67, 106
MwoI GCNNNNNNNGC 6 cut(s) 47, 134, 200, 245, 356, 449
NaeI GCCGGC 1 cut(s) 502
NdeII GATC 2 cut(s) 14, 489
NgoMIV GCCGGC 1 cut(s) 500
NheI GCTAGC 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 453
PaqCI CACCTGC 1 cut(s) 434
PctI GAATGC 2 cut(s) 67, 106
PdiI GCCGGC 1 cut(s) 502
PfeI GAWTC 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 437
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 453
PstNI CAGNNNCTG 1 cut(s) 236
PvuII CAGCTG 3 cut(s) 89, 128, 530
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
Sau3AI GATC 2 cut(s) 14, 489
SchI GAGTC 1 cut(s) 416
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 3 cut(s) 101, 161, 322
SfcI CTRYAG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 1 cut(s) 405
SsiI CCGC 5 cut(s) 104, 135, 192, 200, 348
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 498
TaqI TCGA 1 cut(s) 185
TasI AATT 1 cut(s) 405
TauI GCSGC 2 cut(s) 107, 203
TfiI GAWTC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 437
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.