Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

9722491 .. 9723136

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTCGATCAAGCGCTGTCGTTTTGGTGCTTATGGCTGCCCTTTTGGTGGCCTCAACAAGGGCACAATCCCCTGCATCTTCACCAGCCAAGTCCCCTGCCTCTGCCCCTTCTCCTTTGAGCACTCCACCTGCTGCCTCTCCTCCTTTGGGCACTCCATCTTCAGCTGCTCCTTCAACAGCTCCCGTCGCAGACTCTCCACCTTCTCCCCCATCGTCTTCCCCTAAATCTCCGGCCACCTCTACCTCTACCTCTCCCTCTCTCTCTACTTCGGTGTCGGGATCGCCCTCGGAAGCTCCTGCTCCCAACGGCGCCGTTTTGAACAGGTTCTCCATCGCCGGATCGGTGGCCGTTGGGGTTTTCGCTGCCGCATTGCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

11.94

Weight (kDa)

10.9

Isoelectric Point (pI)

98.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	139
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	2 cut(s)	289, 349
AcoI	YGGCCR	2 cut(s)	234, 348
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	312
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	49, 60, 149
AgsI	TTSAA	2 cut(s)	177, 322
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	3 cut(s)	167, 182, 296
AluI	AGCT	3 cut(s)	167, 182, 296
Alw21I	GWGCWC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	289, 349
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	3 cut(s)	51, 234, 348
ApeKI	GCWGC	4 cut(s)	38, 134, 167, 365
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	17, 314
AsuHPI	GGTGA	1 cut(s)	75
BaeGI	GKGCMC	2 cut(s)	67, 155
BanI	GGYRCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	4 cut(s)	25, 121, 154, 352
BccI	CCATC	3 cut(s)	166, 220, 341
BceAI	ACGGC	3 cut(s)	299, 325, 335
BfoI	RGCGCY	2 cut(s)	18, 315
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	5 cut(s)	39, 135, 168, 366, 369
BlsI	GCNGC	5 cut(s)	40, 136, 169, 367, 370
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 60, 149
Bse3DI	GCAATG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	49, 60, 149
BseMI	GCAATG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	2 cut(s)	67, 155
BseXI	GCAGC	4 cut(s)	25, 121, 154, 352
BshFI	GGCC	3 cut(s)	53, 236, 350
BshNI	GGYRCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	233, 339
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	49, 60, 149
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	53, 236, 350
Bsp1286I	GDGCHC	3 cut(s)	67, 125, 155
Bsp143I	GATC	3 cut(s)	8, 281, 341
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	3 cut(s)	53, 236, 350
BspLI	GGNNCC	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	289, 349
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	8, 281, 341
BssNI	GRCGYC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	312
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstH2I	RGCGCY	2 cut(s)	18, 315
BstHHI	GCGC	2 cut(s)	17, 314
BstKTI	GATC	3 cut(s)	11, 284, 344
BstMBI	GATC	3 cut(s)	8, 281, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSLI	GKGCMC	2 cut(s)	67, 155
BstV1I	GCAGC	4 cut(s)	25, 121, 154, 352
BstV2I	GAAGAC	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	53, 236, 350
BtgZI	GCGATG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	139
CfoI	GCGC	2 cut(s)	17, 314
CviJI	RGCY	9 cut(s)	5, 38, 53, 89, 167, 182, 236, 296, 350
CviKI_1	RGCY	9 cut(s)	5, 38, 53, 89, 167, 182, 236, 296, 350
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	3 cut(s)	10, 283, 343
DpnII	GATC	3 cut(s)	8, 281, 341
EaeI	YGGCCR	2 cut(s)	234, 348
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
FaiI	YATR	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	39, 135, 168, 366, 369
Fsp4HI	GCNGC	5 cut(s)	39, 135, 168, 366, 369
GlaI	GCGC	2 cut(s)	16, 313
GluI	GCNGC	5 cut(s)	39, 135, 168, 366, 369
HaeII	RGCGCY	2 cut(s)	18, 315
HaeIII	GGCC	3 cut(s)	53, 236, 350
HapII	CCGG	2 cut(s)	233, 339
HhaI	GCGC	2 cut(s)	17, 314
Hin1I	GRCGYC	1 cut(s)	312
Hin6I	GCGC	2 cut(s)	15, 312
HinP1I	GCGC	2 cut(s)	15, 312
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	2 cut(s)	233, 339
HphI	GGTGA	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	279
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	120, 183, 213
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	312
HspAI	GCGC	2 cut(s)	15, 312
KasI	GGCGCC	1 cut(s)	311
Kzo9I	GATC	3 cut(s)	8, 281, 341
LmnI	GCTCC	4 cut(s)	175, 187, 301, 307
LpnPI	CCDG	8 cut(s)	87, 99, 111, 144, 246, 310, 312, 352
Lsp1109I	GCAGC	4 cut(s)	25, 121, 154, 352
LweI	GCATC	1 cut(s)	86
MalI	GATC	3 cut(s)	10, 283, 343
MboI	GATC	3 cut(s)	8, 281, 341
MboII	GAAGA	3 cut(s)	72, 153, 210
MhlI	GDGCHC	3 cut(s)	67, 125, 155
Mly113I	GGCGCC	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	9 cut(s)	64, 112, 148, 153, 250, 256, 262, 268, 298
MroXI	GAANNNNTTC	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	2 cut(s)	233, 339
MwoI	GCNNNNNNNGC	1 cut(s)	188
NarI	GGCGCC	1 cut(s)	312
NdeII	GATC	3 cut(s)	8, 281, 341
NlaIV	GGNNCC	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	326
PkrI	GCNGC	5 cut(s)	40, 136, 169, 367, 370
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	167
SatI	GCNGC	5 cut(s)	39, 135, 168, 366, 369
Sau3AI	GATC	3 cut(s)	8, 281, 341
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	67, 125, 155
SetI	ASST	9 cut(s)	133, 169, 184, 205, 242, 248, 254, 298, 329
SfaNI	GCATC	1 cut(s)	86
SfoI	GGCGCC	1 cut(s)	313
SsiI	CCGC	1 cut(s)	369
SspDI	GGCGCC	1 cut(s)	311
TaqI	TCGA	1 cut(s)	7
TauI	GCSGC	1 cut(s)	371
TseI	GCWGC	4 cut(s)	38, 134, 167, 365
XagI	CCTNNNNNAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.