Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

9710082 .. 9710713

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G065500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCAGATTCAGCGGCGTCGTTTTGGTGCTAATGGCTTCTCTCTTGTTGGCCTCAACAAGGGCACAATCCCCTACATCGTCACCAGCCAAGTCCCCTGTGTTCTCTCCCAAAAAAGCCGCTGCCCCTTCTCCATCGAGCACTCCACCCAAGGCTTCGCCTTCTCCATTGAGCACTCCACCGTCGGCTGCTCCTTCTCAGTCTCCCGCCGCAGGCTCTCCACCTTCTCCCCCATCCGCTTCCCCTGAATCTCCAGCGATCCCTCCATCTTCAGTCTCTGGACCGCCCTCTGAGGCTCCCGCACCCGCCACCAACGGCGCCGTTTTGAATAGATTCTCCGCCGCCGGATCTGTGGCTGCTGTGGTTTTCGCTGCTGTCTTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

12.36

Weight (kDa)

11.07

Isoelectric Point (pI)

103.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AclWI	GGATC	2 cut(s)	253, 355
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	2 cut(s)	18, 318
AfiI	CCNNNNNNNGG	2 cut(s)	60, 212
AgsI	TTSAA	1 cut(s)	328
Alw21I	GWGCWC	2 cut(s)	143, 176
Alw26I	GTCTC	2 cut(s)	207, 280
AlwI	GGATC	2 cut(s)	253, 355
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	3, 51
ApeKI	GCWGC	4 cut(s)	122, 188, 356, 371
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	143, 176
BbvI	GCAGC	4 cut(s)	109, 175, 343, 358
BccI	CCATC	3 cut(s)	142, 241, 274
BceAI	ACGGC	2 cut(s)	305, 331
BcoDI	GTCTC	2 cut(s)	207, 280
BfoI	RGCGCY	1 cut(s)	321
BisI	GCNGC	8 cut(s)	16, 120, 123, 189, 210, 342, 357, 372
BlsI	GCNGC	8 cut(s)	17, 121, 124, 190, 211, 343, 358, 373
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	297, 319
BpmI	CTGGAG	1 cut(s)	237
BsaHI	GRCGYC	2 cut(s)	18, 318
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 212
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	60, 212
BseMII	CTCAG	2 cut(s)	212, 282
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	109, 175, 343, 358
BshFI	GGCC	2 cut(s)	5, 53
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	143, 176
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	60, 212
BsmAI	GTCTC	2 cut(s)	207, 280
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	5, 53
Bsp1286I	GDGCHC	3 cut(s)	67, 143, 176
Bsp143I	GATC	2 cut(s)	258, 347
BspANI	GGCC	2 cut(s)	5, 53
BspCNI	CTCAG	2 cut(s)	211, 283
BspLI	GGNNCC	2 cut(s)	297, 319
BspPI	GGATC	2 cut(s)	253, 355
BspT107I	GGYRCC	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	258, 347
BssNI	GRCGYC	2 cut(s)	18, 318
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	183
BstACI	GRCGYC	2 cut(s)	18, 318
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	198, 291
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	2 cut(s)	261, 350
BstMAI	GTCTC	2 cut(s)	207, 280
BstMBI	GATC	2 cut(s)	258, 347
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	109, 175, 343, 358
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	5, 53
BtsCI	GGATG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	198, 291
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	2 cut(s)	260, 349
DpnII	GATC	2 cut(s)	258, 347
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	150
FaiI	YATR	1 cut(s)	386
FaqI	GGGAC	1 cut(s)	79
FauI	CCCGC	3 cut(s)	214, 307, 313
Fnu4HI	GCNGC	8 cut(s)	16, 120, 123, 189, 210, 342, 357, 372
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	8 cut(s)	16, 120, 123, 189, 210, 342, 357, 372
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	8 cut(s)	16, 120, 123, 189, 210, 342, 357, 372
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	5, 53
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	320
Hin1I	GRCGYC	2 cut(s)	18, 318
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	9, 248, 333
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	279
Hpy99I	CGWCG	2 cut(s)	23, 187
HpyAV	CCTTC	4 cut(s)	138, 171, 204, 234
HpyCH4III	ACNGT	1 cut(s)	183
HpyF3I	CTNAG	2 cut(s)	198, 291
Hsp92I	GRCGYC	2 cut(s)	18, 318
HspAI	GCGC	1 cut(s)	318
KasI	GGCGCC	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	258, 347
LmnI	GCTCC	2 cut(s)	196, 301
LpnPI	CCDG	8 cut(s)	19, 99, 111, 198, 258, 264, 267, 358
Lsp1109I	GCAGC	4 cut(s)	109, 175, 343, 358
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	2 cut(s)	260, 349
MboI	GATC	2 cut(s)	258, 347
MboII	GAAGA	1 cut(s)	261
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	3 cut(s)	67, 143, 176
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	318
MnlI	CCTC	4 cut(s)	64, 273, 286, 298
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	15, 122
MspI	CCGG	1 cut(s)	345
NarI	GGCGCC	1 cut(s)	318
NdeII	GATC	2 cut(s)	258, 347
NlaIV	GGNNCC	2 cut(s)	297, 319
NmuCI	GTSAC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	9, 248, 333
PkrI	GCNGC	8 cut(s)	17, 121, 124, 190, 211, 343, 358, 373
PluTI	GGCGCC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	297, 319
PspPI	GGNCC	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	347
SatI	GCNGC	8 cut(s)	16, 120, 123, 189, 210, 342, 357, 372
Sau3AI	GATC	2 cut(s)	258, 347
Sau96I	GGNCC	1 cut(s)	281
SduI	GDGCHC	3 cut(s)	67, 143, 176
SetI	ASST	1 cut(s)	226
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	281
SspDI	GGCGCC	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	137
TauI	GCSGC	4 cut(s)	18, 122, 212, 344
TfiI	GAWTC	3 cut(s)	9, 248, 333
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	4 cut(s)	122, 188, 356, 371
Tsp45I	GTSAC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.