Prupe.8G066100_v2.0.a1

Classical arabinogalactan protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0009652
Physical Location & Seq
Forward (+)
9798641 .. 9799529
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G066100.1

Sequence Viewer

Length: 396 bp
ATGGCTCGATCCAACGCTGTCGTTTTTGTGCTAATGGCTACTCTCTTGTTGGCCTCAACAAGGGCACAATCCCCTGCATCTTCCCCAGCCAAGTCCCCTGCCTCTGCCCCTTCTCCATTGAGCACTCCACCCGCCGCCGCTCCTTCTCCTTTGAGCACTCCACCAGCTGCTTCACCTTCTCCTTCGGGCACTCCATCCTCGACTACTCCTTCTAAATCTCCCGTCGCAGACTCTCCACCTTCTCCCCCATCGTCTTCCTCTGAATCTCCGGCCACCTCTCCCACTTCTTCGGGATCGCCCGTCCAAGCTCCTACACCCAACGTTGCCGTTTTGAACAGGTTCTCCCTTGCCGGATCTGTGGCCGTTGGGGTTTTTGCTGTCGCCATGCTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

12.59

Weight (kDa)

10.9

Isoelectric Point (pI)

107.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AciI CCGC 3 cut(s) 132, 135, 138
AclI AACGTT 1 cut(s) 321
AclWI GGATC 3 cut(s) 3, 301, 361
AcoI YGGCCR 2 cut(s) 270, 360
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 334
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 167, 308
AluI AGCT 2 cut(s) 167, 308
Alw21I GWGCWC 2 cut(s) 125, 158
AlwI GGATC 3 cut(s) 3, 301, 361
AoxI GGCC 3 cut(s) 51, 270, 360
ApeKI GCWGC 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 165
BaeGI GKGCMC 2 cut(s) 67, 191
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 2 cut(s) 125, 158
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 202, 256
BceAI ACGGC 2 cut(s) 311, 347
BisI GCNGC 3 cut(s) 135, 138, 168
BlsI GCNGC 3 cut(s) 136, 139, 169
BmsI GCATC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 60
BseSI GKGCMC 2 cut(s) 67, 191
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 3 cut(s) 53, 272, 362
BsiHKAI GWGCWC 2 cut(s) 125, 158
BsiSI CCGG 2 cut(s) 269, 351
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 3 cut(s) 53, 272, 362
Bsp1286I GDGCHC 4 cut(s) 67, 125, 158, 191
Bsp143I GATC 3 cut(s) 8, 293, 353
BspACI CCGC 3 cut(s) 132, 135, 138
BspANI GGCC 3 cut(s) 53, 272, 362
BspPI GGATC 3 cut(s) 3, 301, 361
BsrBI CCGCTC 1 cut(s) 140
BssMI GATC 3 cut(s) 8, 293, 353
BstENI CCTNNNNNAGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 3 cut(s) 11, 296, 356
BstMBI GATC 3 cut(s) 8, 293, 353
BstSLI GKGCMC 2 cut(s) 67, 191
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 3 cut(s) 53, 272, 362
BtsCI GGATG 1 cut(s) 194
CviAII CATG 1 cut(s) 385
CviJI RGCY 8 cut(s) 5, 38, 53, 89, 167, 272, 308, 362
CviKI_1 RGCY 8 cut(s) 5, 38, 53, 89, 167, 272, 308, 362
DpnI GATC 3 cut(s) 10, 295, 355
DpnII GATC 3 cut(s) 8, 293, 353
EaeI YGGCCR 2 cut(s) 270, 360
EcoNI CCTNNNNNAGG 1 cut(s) 58
FaeI CATG 1 cut(s) 388
FaiI YATR 2 cut(s) 386, 392
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 135, 138, 168
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 135, 138, 168
GluI GCNGC 3 cut(s) 135, 138, 168
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 3 cut(s) 53, 272, 362
HapII CCGG 2 cut(s) 269, 351
Hin1II CATG 1 cut(s) 388
HinfI GANTC 2 cut(s) 230, 263
HpaII CCGG 2 cut(s) 269, 351
HphI GGTGA 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 291
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 6 cut(s) 120, 153, 186, 192, 219, 249
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 388
Kzo9I GATC 3 cut(s) 8, 293, 353
LmnI GCTCC 2 cut(s) 145, 313
LpnPI CCDG 7 cut(s) 87, 99, 111, 177, 282, 322, 364
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 86
MaeII ACGT 1 cut(s) 321
MalI GATC 3 cut(s) 10, 295, 355
MbiI CCGCTC 1 cut(s) 140
MboI GATC 3 cut(s) 8, 293, 353
MboII GAAGA 3 cut(s) 72, 246, 279
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 4 cut(s) 67, 125, 158, 191
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 5 cut(s) 64, 112, 208, 268, 286
MroXI GAANNNNTTC 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 2 cut(s) 269, 351
NdeII GATC 3 cut(s) 8, 293, 353
NlaIII CATG 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 136, 139, 169
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp1406I AACGTT 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 389
SatI GCNGC 3 cut(s) 135, 138, 168
Sau3AI GATC 3 cut(s) 8, 293, 353
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 4 cut(s) 67, 125, 158, 191
SetI ASST 7 cut(s) 169, 178, 241, 278, 310, 324, 341
SfaNI GCATC 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 389
SsiI CCGC 3 cut(s) 132, 135, 138
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 7, 200
TauI GCSGC 2 cut(s) 137, 140
TfiI GAWTC 1 cut(s) 263
TseI GCWGC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.