Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

2507860 .. 2508520

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTCGCTCCAGCGCCGTGGTTTTGGTGATCATGGCTGCTCTGTTGGTGGCCTCAACAAGGGCACAATCCCCTGCATCGTCACCATCCAAGTCCCATGCAGCTTCTCCATCGAGCACTCCAACATCAGCTGCTCCTTCTCCGTCTAGCCATCCACCTAAGGCAGCATCTTCTGCTTCTCCATCAAGCTCTCCTAAGGCTGCATCTTCTGCTTCCCCATCAAGCTCTCCACCTTTTCCTTCTCCAGTGAGCACTCCACCTTCTTCTTCTCCTTCGAGCACCCAACCTACGGCCTCTCCTTCTCCATCGAGCACTACACCAACTACCGCTCCCTCTCCATCGAGCACTTCAACGGAGGCTGCTCCTTCTAGCAAGCCAGCTGCCAACTCTCCGCCTTCTCCTCCCTCGTCTTCCCCTGTGGCCACTCCAGAGATTTCTCCCTCTTCGTCTGGAGTTGCTCCTGCACCGGCCCCTAGCGGTGCCGTTTCGAATAGGTTGGCCGTGGCCGGATCTCTTGCCAGTGGGGTTTTCGCTGCTGTCTTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

17.15

Weight (kDa)

11.07

Isoelectric Point (pI)

119.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	3 cut(s)	327, 392, 477
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	3 cut(s)	420, 498, 504
AfiI	CCNNNNNNNGG	2 cut(s)	60, 289
AgsI	TTSAA	1 cut(s)	351
AluBI	AGCT	5 cut(s)	104, 131, 189, 225, 380
AluI	AGCT	5 cut(s)	104, 131, 189, 225, 380
Alw21I	GWGCWC	5 cut(s)	119, 254, 281, 314, 347
AlwI	GGATC	1 cut(s)	517
AoxI	GGCC	6 cut(s)	51, 291, 420, 468, 498, 504
ApeKI	GCWGC	8 cut(s)	38, 101, 131, 164, 200, 359, 380, 533
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	40, 75
AsuII	TTCGAA	1 cut(s)	488
AxyI	CCTNAGG	2 cut(s)	159, 195
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	5 cut(s)	119, 254, 281, 314, 347
BbvI	GCAGC	8 cut(s)	25, 113, 118, 176, 187, 346, 367, 520
BccI	CCATC	7 cut(s)	94, 118, 159, 190, 226, 313, 346
BceAI	ACGGC	4 cut(s)	2, 306, 467, 485
BclI	TGATCA	1 cut(s)	30
BfaI	CTAG	3 cut(s)	147, 369, 474
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	8 cut(s)	39, 102, 132, 165, 201, 360, 381, 534
BlsI	GCNGC	8 cut(s)	40, 103, 133, 166, 202, 361, 382, 535
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	2 cut(s)	471, 481
BmsI	GCATC	3 cut(s)	86, 176, 212
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	3 cut(s)	228, 411, 471
Bpu14I	TTCGAA	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	18, 501
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 289
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	2 cut(s)	245, 519
Bse21I	CCTNAGG	2 cut(s)	159, 195
BseDI	CCNNGG	2 cut(s)	18, 501
BseGI	GGATG	2 cut(s)	86, 151
BseLI	CCNNNNNNNGG	2 cut(s)	60, 289
BseNI	ACTGG	2 cut(s)	245, 519
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	8 cut(s)	25, 113, 118, 176, 187, 346, 367, 520
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	6 cut(s)	53, 293, 422, 470, 500, 506
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	5 cut(s)	119, 254, 281, 314, 347
BsiSI	CCGG	2 cut(s)	467, 507
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	60, 289
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	6 cut(s)	53, 293, 422, 470, 500, 506
Bsp119I	TTCGAA	1 cut(s)	488
Bsp1286I	GDGCHC	6 cut(s)	67, 119, 254, 281, 314, 347
Bsp143I	GATC	2 cut(s)	30, 509
BspACI	CCGC	3 cut(s)	327, 392, 477
BspANI	GGCC	6 cut(s)	53, 293, 422, 470, 500, 506
BspLI	GGNNCC	2 cut(s)	471, 481
BspPI	GGATC	1 cut(s)	517
BspT104I	TTCGAA	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	245, 519
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	18, 501
BssMI	GATC	2 cut(s)	30, 509
Bst6I	CTCTTC	1 cut(s)	448
BstAPI	GCANNNNNTGC	2 cut(s)	173, 209
BstBI	TTCGAA	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	7, 374, 378
BstDEI	CTNAG	2 cut(s)	159, 195
BstDSI	CCRYGG	2 cut(s)	18, 501
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	86, 151
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	33, 512
BstMBI	GATC	2 cut(s)	30, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 209
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	8 cut(s)	25, 113, 118, 176, 187, 346, 367, 520
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	509
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	509
Bsu36I	CCTNAGG	2 cut(s)	159, 195
BsuRI	GGCC	6 cut(s)	53, 293, 422, 470, 500, 506
BtgI	CCRYGG	2 cut(s)	18, 501
BtsCI	GGATG	2 cut(s)	86, 151
BtsIMutI	CAGTG	2 cut(s)	252, 526
Cac8I	GCNNGC	3 cut(s)	7, 374, 378
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	469
CviAII	CATG	2 cut(s)	34, 98
DdeI	CTNAG	2 cut(s)	159, 195
DpnI	GATC	2 cut(s)	32, 511
DpnII	GATC	2 cut(s)	30, 509
EaeI	YGGCCR	3 cut(s)	420, 498, 504
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	381
Eco81I	CCTNAGG	2 cut(s)	159, 195
EcoNI	CCTNNNNNAGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	37, 101
FaiI	YATR	3 cut(s)	35, 99, 548
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	33, 97
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	8 cut(s)	39, 102, 132, 165, 201, 360, 381, 534
FokI	GGATG	2 cut(s)	73, 138
Fsp4HI	GCNGC	8 cut(s)	39, 102, 132, 165, 201, 360, 381, 534
FspBI	CTAG	3 cut(s)	147, 369, 474
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	8 cut(s)	39, 102, 132, 165, 201, 360, 381, 534
GsuI	CTGGAG	3 cut(s)	228, 411, 471
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	6 cut(s)	53, 293, 422, 470, 500, 506
HapII	CCGG	2 cut(s)	467, 507
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	37, 101
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HpaII	CCGG	2 cut(s)	467, 507
HphI	GGTGA	2 cut(s)	40, 75
Hpy188III	TCNNGA	2 cut(s)	428, 450
HpyAV	CCTTC	7 cut(s)	147, 249, 270, 282, 309, 375, 405
HpyCH4V	TGCA	4 cut(s)	77, 101, 203, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 209
HpyF3I	CTNAG	2 cut(s)	159, 195
Hsp92II	CATG	2 cut(s)	37, 101
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 509
LmnI	GCTCC	5 cut(s)	14, 139, 334, 367, 463
Lsp1109I	GCAGC	8 cut(s)	25, 113, 118, 176, 187, 346, 367, 520
LweI	GCATC	3 cut(s)	86, 176, 212
MaeI	CTAG	3 cut(s)	147, 369, 474
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	2 cut(s)	32, 511
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	2 cut(s)	30, 509
MboII	GAAGA	6 cut(s)	162, 198, 255, 258, 402, 435
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	6 cut(s)	67, 119, 254, 281, 314, 347
MlsI	TGGCCA	1 cut(s)	422
MluNI	TGGCCA	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	64, 304, 343, 349, 411, 415, 451
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	2 cut(s)	131, 380
MspI	CCGG	2 cut(s)	467, 507
MwoI	GCNNNNNNNGC	2 cut(s)	173, 209
NdeII	GATC	2 cut(s)	30, 509
NlaIII	CATG	2 cut(s)	37, 101
NlaIV	GGNNCC	2 cut(s)	471, 481
NmuCI	GTSAC	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	488
PkrI	GCNGC	8 cut(s)	40, 103, 133, 166, 202, 361, 382, 535
PspN4I	GGNNCC	2 cut(s)	471, 481
PspPI	GGNCC	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	509
PvuII	CAGCTG	2 cut(s)	131, 380
SatI	GCNGC	8 cut(s)	39, 102, 132, 165, 201, 360, 381, 534
Sau3AI	GATC	2 cut(s)	30, 509
Sau96I	GGNCC	1 cut(s)	469
SduI	GDGCHC	6 cut(s)	67, 119, 254, 281, 314, 347
SfaNI	GCATC	3 cut(s)	86, 176, 212
SfuI	TTCGAA	1 cut(s)	488
SsiI	CCGC	3 cut(s)	327, 392, 477
SspMI	CTAG	3 cut(s)	147, 369, 474
TaqI	TCGA	5 cut(s)	113, 275, 308, 341, 488
TscAI	CASTG	2 cut(s)	252, 526
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	8 cut(s)	38, 101, 131, 164, 200, 359, 380, 533
Tsp45I	GTSAC	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	132, 368
TspRI	CASTG	2 cut(s)	252, 526
XagI	CCTNNNNNAGG	1 cut(s)	58
XspI	CTAG	3 cut(s)	147, 369, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.