Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Reverse (-)

12395478 .. 12396174

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTCGATCCAACGCTGTCGTTTTGATGCTAATGGCTGCCCTCTTGGTGGCCTCAACAAGGGCACAATCTCCGGTATCTTCCCCAGCCAAGTCCCCTGCACTCTCTCCCAAACAAGCCTCTGCTCCTCCTTTGAGCGCTTCACCTTCTCCTTCGGGCACTCCACAATTGGCTGCTCCTTCTACATCTCCCGTCGCAGCCTCTCCACCTTCTCCACCATCGTCTTCCCCGGCCGCCTCTCCCCCTACTTCGGTGTTGGGATCCCCCTCGGAAGCTCTTGCACCGAACGGCGCCGTTTCGAATAGGTTCTCCGGCCCAGGATTTGTGGCCGTTGGTGTTTTCGCTGCCGCCTTGCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

11.47

Weight (kDa)

11.72

Isoelectric Point (pI)

98.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AciI	CCGC	2 cut(s)	234, 348
AclWI	GGATC	3 cut(s)	3, 255, 268
AcoI	YGGCCR	2 cut(s)	231, 327
AcyI	GRCGYC	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	139
AfiI	CCNNNNNNNGG	3 cut(s)	49, 60, 250
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
AlwI	GGATC	3 cut(s)	3, 255, 268
Aor51HI	AGCGCT	1 cut(s)	139
AoxI	GGCC	4 cut(s)	51, 231, 313, 327
ApeKI	GCWGC	4 cut(s)	38, 173, 197, 344
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	140, 293
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	135
AsuII	TTCGAA	1 cut(s)	299
BaeGI	GKGCMC	2 cut(s)	67, 161
BamHI	GGATCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	25, 160, 209, 331
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	3 cut(s)	278, 304, 314
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	230
BfoI	RGCGCY	2 cut(s)	141, 294
BisI	GCNGC	6 cut(s)	39, 174, 198, 234, 345, 348
BlsI	GCNGC	6 cut(s)	40, 175, 199, 235, 346, 349
Bme1390I	CCNGG	2 cut(s)	230, 318
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	262, 292
BmrFI	CCNGG	2 cut(s)	230, 318
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	228, 267, 316
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 60, 250
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	228, 267, 316
BseLI	CCNNNNNNNGG	3 cut(s)	49, 60, 250
BseRI	GAGGAG	1 cut(s)	117
BseSI	GKGCMC	2 cut(s)	67, 161
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	4 cut(s)	25, 160, 209, 331
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	53, 233, 315, 329
BshNI	GGYRCC	1 cut(s)	290
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	74, 230, 312
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	49, 60, 250
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	4 cut(s)	53, 233, 315, 329
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	67, 161
Bsp143I	GATC	2 cut(s)	8, 260
BspACI	CCGC	2 cut(s)	234, 348
BspANI	GGCC	4 cut(s)	53, 233, 315, 329
BspLI	GGNNCC	2 cut(s)	262, 292
BspPI	GGATC	3 cut(s)	3, 255, 268
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	228, 267, 316
BssMI	GATC	2 cut(s)	8, 260
BssNI	GRCGYC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	299
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstH2I	RGCGCY	2 cut(s)	141, 294
BstHHI	GCGC	2 cut(s)	140, 293
BstKTI	GATC	2 cut(s)	11, 263
BstMBI	GATC	2 cut(s)	8, 260
BstMCI	CGRYCG	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	228, 316
BstSLI	GKGCMC	2 cut(s)	67, 161
BstV1I	GCAGC	4 cut(s)	25, 160, 209, 331
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	53, 233, 315, 329
CfoI	GCGC	2 cut(s)	140, 293
Cfr13I	GGNCC	1 cut(s)	314
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	2 cut(s)	10, 262
DpnII	GATC	2 cut(s)	8, 260
EaeI	YGGCCR	2 cut(s)	231, 327
EagI	CGGCCG	1 cut(s)	231
EclXI	CGGCCG	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	139
Eco52I	CGGCCG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	316
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
FaiI	YATR	1 cut(s)	359
FaqI	GGGAC	1 cut(s)	79
Fnu4HI	GCNGC	6 cut(s)	39, 174, 198, 234, 345, 348
Fsp4HI	GCNGC	6 cut(s)	39, 174, 198, 234, 345, 348
GlaI	GCGC	2 cut(s)	139, 292
GluI	GCNGC	6 cut(s)	39, 174, 198, 234, 345, 348
GsaI	CCCAGC	1 cut(s)	89
HaeII	RGCGCY	2 cut(s)	141, 294
HaeIII	GGCC	4 cut(s)	53, 233, 315, 329
HapII	CCGG	3 cut(s)	74, 230, 312
HhaI	GCGC	2 cut(s)	140, 293
Hin1I	GRCGYC	1 cut(s)	291
Hin6I	GCGC	2 cut(s)	138, 291
HinP1I	GCGC	2 cut(s)	138, 291
HpaII	CCGG	3 cut(s)	74, 230, 312
HphI	GGTGA	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	4 cut(s)	156, 162, 189, 219
HpyCH4V	TGCA	2 cut(s)	101, 281
Hsp92I	GRCGYC	1 cut(s)	291
HspAI	GCGC	2 cut(s)	138, 291
KasI	GGCGCC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	8, 260
LmnI	GCTCC	2 cut(s)	130, 181
LpnPI	CCDG	7 cut(s)	87, 99, 111, 243, 303, 325, 330
Lsp1109I	GCAGC	4 cut(s)	25, 160, 209, 331
LweI	GCATC	1 cut(s)	18
MalI	GATC	2 cut(s)	10, 262
MboI	GATC	2 cut(s)	8, 260
MboII	GAAGA	2 cut(s)	72, 216
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	67, 161
MluCI	AATT	1 cut(s)	167
Mly113I	GGCGCC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	53, 64, 130, 138, 211, 247, 277
MroXI	GAANNNNTTC	1 cut(s)	305
MspI	CCGG	3 cut(s)	74, 230, 312
MspR9I	CCNGG	2 cut(s)	230, 318
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	318
NarI	GGCGCC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	8, 260
NlaIV	GGNNCC	2 cut(s)	262, 292
NspV	TTCGAA	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	305
PkrI	GCNGC	6 cut(s)	40, 175, 199, 235, 346, 349
PluTI	GGCGCC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	262, 292
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	260
SatI	GCNGC	6 cut(s)	39, 174, 198, 234, 345, 348
Sau3AI	GATC	2 cut(s)	8, 260
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	230, 318
SduI	GDGCHC	2 cut(s)	67, 161
SetI	ASST	4 cut(s)	148, 211, 277, 308
SfaNI	GCATC	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	299
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	234, 348
SspDI	GGCGCC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	228, 316
TaqI	TCGA	2 cut(s)	7, 299
TasI	AATT	1 cut(s)	167
TauI	GCSGC	2 cut(s)	236, 350
TseI	GCWGC	4 cut(s)	38, 173, 197, 344
XagI	CCTNNNNNAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.