Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

9747156 .. 9747742

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G065800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCCCAATCCAACGCCGTCGTTTTGGTGCTAATGGCTGCCCTCTTGGTGGCCTCAACAAGGGCACAATCCCCTGCCTCTGCCCCTTCTCCTTTGAGCACTCCACCCGCCGCCGCTCCTTCTCCTTTGAGCACTCCACCCGCTGCTTCACCTTCTCCTTTGAGTACCTCACCTTCTCCTTCGGGCACTCCACCCTCGGCTGCTCCTTCTACACCTCCGGTCGCAGACTCTCCACTTTCTCCCCCATCGTCTTCTCCTGAATCTCCGGCCCCCTCTCCCCCTTCTTCGGTCTCGGGATCCCCCACAGAAGCTCCTGCACCCAACGGTGTAGTTTTGAACAGGTTCTCCCTCGCCGGTTCCGTGGCCGTTGGGGTTTTCTCTGTCGCCATGCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

12.54

Weight (kDa)

4.68

Isoelectric Point (pI)

109.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	116
AciI	CCGC	4 cut(s)	108, 111, 114, 141
AclWI	GGATC	2 cut(s)	291, 304
AcoI	YGGCCR	1 cut(s)	363
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	49, 60, 286
AgsI	TTSAA	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	2 cut(s)	101, 134
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	291, 304
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	4 cut(s)	3, 51, 267, 363
ApeKI	GCWGC	3 cut(s)	38, 143, 200
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	4, 268
AsuHPI	GGTGA	2 cut(s)	141, 162
AvaI	CYCGRG	1 cut(s)	292
BaeGI	GKGCMC	2 cut(s)	67, 188
BamHI	GGATCC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	101, 134
BbvI	GCAGC	3 cut(s)	25, 130, 187
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	2, 350
BcoDI	GTCTC	1 cut(s)	295
BisI	GCNGC	5 cut(s)	39, 111, 114, 144, 201
BlsI	GCNGC	5 cut(s)	40, 112, 115, 145, 202
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	4, 268
BmiI	GGNNCC	3 cut(s)	270, 298, 358
BpiI	GAAGAC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	195, 360
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	4 cut(s)	295, 325, 329, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 60, 286
Bse118I	RCCGGY	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	195, 360
BseLI	CCNNNNNNNGG	3 cut(s)	49, 60, 286
BseSI	GKGCMC	2 cut(s)	67, 188
BseXI	GCAGC	3 cut(s)	25, 130, 187
BsgI	GTGCAG	1 cut(s)	300
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	5, 53, 269, 365
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	101, 134
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	218, 266, 354
BslI	CCNNNNNNNGG	3 cut(s)	49, 60, 286
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	4 cut(s)	5, 53, 269, 365
Bso31I	GGTCTC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	4 cut(s)	67, 101, 134, 188
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	4 cut(s)	108, 111, 114, 141
BspANI	GGCC	4 cut(s)	5, 53, 269, 365
BspLI	GGNNCC	3 cut(s)	270, 298, 358
BspPI	GGATC	2 cut(s)	291, 304
BspTNI	GGTCTC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	195, 360
BssMI	GATC	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	360
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	299
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	296
BstMCI	CGRYCG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	67, 188
BstV1I	GCAGC	3 cut(s)	25, 130, 187
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	4 cut(s)	5, 53, 269, 365
BtgI	CCRYGG	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	4, 268
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	7 cut(s)	5, 38, 53, 200, 269, 311, 365
CviKI_1	RGCY	7 cut(s)	5, 38, 53, 200, 269, 311, 365
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	391
FaiI	YATR	2 cut(s)	389, 395
FatI	CATG	1 cut(s)	387
FauI	CCCGC	2 cut(s)	115, 148
Fnu4HI	GCNGC	5 cut(s)	39, 111, 114, 144, 201
Fsp4HI	GCNGC	5 cut(s)	39, 111, 114, 144, 201
GluI	GCNGC	5 cut(s)	39, 111, 114, 144, 201
HaeIII	GGCC	4 cut(s)	5, 53, 269, 365
HapII	CCGG	3 cut(s)	218, 266, 354
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	2 cut(s)	227, 260
HpaII	CCGG	3 cut(s)	218, 266, 354
HphI	GGTGA	2 cut(s)	141, 162
Hpy188III	TCNNGA	2 cut(s)	257, 294
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	7 cut(s)	96, 129, 162, 183, 189, 216, 291
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	3 cut(s)	121, 208, 316
LpnPI	CCDG	7 cut(s)	87, 231, 270, 279, 325, 327, 367
Lsp1109I	GCAGC	3 cut(s)	25, 130, 187
MalI	GATC	1 cut(s)	298
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	1 cut(s)	296
MboII	GAAGA	2 cut(s)	243, 276
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	4 cut(s)	67, 101, 134, 188
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	8 cut(s)	53, 64, 88, 178, 205, 225, 283, 359
MroXI	GAANNNNTTC	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	3 cut(s)	218, 266, 354
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	3 cut(s)	270, 298, 358
NmeAIII	GCCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	5 cut(s)	40, 112, 115, 145, 202
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	270, 298, 358
PspPI	GGNCC	2 cut(s)	4, 268
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	392
SatI	GCNGC	5 cut(s)	39, 111, 114, 144, 201
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	2 cut(s)	4, 268
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	4 cut(s)	67, 101, 134, 188
SetI	ASST	6 cut(s)	154, 170, 175, 217, 313, 344
SmiMI	CAYNNNNRTG	1 cut(s)	392
SsiI	CCGC	4 cut(s)	108, 111, 114, 141
TaaI	ACNGT	1 cut(s)	326
TaqII	GACCGA	1 cut(s)	277
TauI	GCSGC	2 cut(s)	113, 116
TfiI	GAWTC	1 cut(s)	260
TseI	GCWGC	3 cut(s)	38, 143, 200
TspGWI	ACGGA	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.