Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

9801065 .. 9801677

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTTCCTCAGGCTCAACCCTCGTCGCTCTGATGCTCGTTGCACTGCTTGTGGGCCACACCATGGCGCAGTCTCCGGCTAAATCGCCGGCATTGTCTCCGACCAGATCGCCACCGGCTTCAGCTCCTTCTCCGTCGTCCGCCGCTCCATCGACGCCTAAGGTGAAATCTCCCCCTAGCCCTACTCCGTCGACCGCTCAGTCTCCGGCGAGTTCTCCTTCCTTGATCTCTGCTCCTCCATCTGAAGCGCCTGCGCCGTCGGAGAACGGCGCCGTTTTGAACAGAATTTCTGCCTCCTCGTCCGTGGTGATTGGCCTCTGCGCCGTCGTTTTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

10.91

Weight (kDa)

9.78

Isoelectric Point (pI)

101.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccBSI	CCGCTC	2 cut(s)	146, 197
AccI	GTMKAC	1 cut(s)	191
AciI	CCGC	3 cut(s)	141, 144, 195
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	105, 264
AcyI	GRCGYC	2 cut(s)	155, 270
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	3 cut(s)	78, 102, 207
AoxI	GGCC	2 cut(s)	55, 313
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	5 cut(s)	70, 250, 256, 272, 323
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	175, 319
AxyI	CCTNAGG	2 cut(s)	10, 159
BanI	GGYRCC	1 cut(s)	269
BccI	CCATC	2 cut(s)	157, 247
BceAI	ACGGC	4 cut(s)	241, 257, 283, 308
BcoDI	GTCTC	3 cut(s)	78, 102, 207
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	2 cut(s)	251, 273
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	271
BmsI	GCATC	1 cut(s)	24
BsaHI	GRCGYC	2 cut(s)	155, 270
BsaJI	CCNNGG	2 cut(s)	63, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	2 cut(s)	88, 115
Bse21I	CCTNAGG	2 cut(s)	10, 159
BseDI	CCNNGG	2 cut(s)	63, 303
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	24, 212
BseRI	GAGGAG	2 cut(s)	225, 286
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	57, 315
BshNI	GGYRCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	77, 89, 116, 206
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	78, 102, 207
BsnI	GGCC	2 cut(s)	57, 315
Bsp143I	GATC	2 cut(s)	107, 225
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	3 cut(s)	141, 144, 195
BspANI	GGCC	2 cut(s)	57, 315
BspCNI	CTCAG	2 cut(s)	23, 211
BspLI	GGNNCC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	269
BsrBI	CCGCTC	2 cut(s)	146, 197
BsrFI	RCCGGY	2 cut(s)	88, 115
BssAI	RCCGGY	2 cut(s)	88, 115
BssECI	CCNNGG	2 cut(s)	63, 303
BssMI	GATC	2 cut(s)	107, 225
BssNI	GRCGYC	2 cut(s)	155, 270
BssT1I	CCWWGG	1 cut(s)	63
BstACI	GRCGYC	2 cut(s)	155, 270
BstC8I	GCNNGC	2 cut(s)	90, 252
BstDEI	CTNAG	3 cut(s)	10, 159, 198
BstDSI	CCRYGG	2 cut(s)	63, 303
BstH2I	RGCGCY	2 cut(s)	251, 273
BstHHI	GCGC	5 cut(s)	70, 250, 256, 272, 323
BstKTI	GATC	2 cut(s)	110, 228
BstMAI	GTCTC	3 cut(s)	78, 102, 207
BstMBI	GATC	2 cut(s)	107, 225
BstMCI	CGRYCG	1 cut(s)	195
Bsu36I	CCTNAGG	2 cut(s)	10, 159
BsuRI	GGCC	2 cut(s)	57, 315
BtgI	CCRYGG	2 cut(s)	63, 303
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	90, 252
CfoI	GCGC	5 cut(s)	70, 250, 256, 272, 323
Cfr10I	RCCGGY	2 cut(s)	88, 115
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	163
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	8 cut(s)	5, 15, 57, 80, 119, 125, 180, 315
CviKI_1	RGCY	8 cut(s)	5, 15, 57, 80, 119, 125, 180, 315
DdeI	CTNAG	3 cut(s)	10, 159, 198
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	2 cut(s)	109, 227
DpnII	GATC	2 cut(s)	107, 225
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	105, 264
Eco81I	CCTNAGG	2 cut(s)	10, 159
EcoT14I	CCWWGG	1 cut(s)	63
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	67
FaiI	YATR	2 cut(s)	65, 338
FatI	CATG	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	5 cut(s)	69, 249, 255, 271, 322
GluI	GCNGC	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	251, 273
HaeIII	GGCC	2 cut(s)	57, 315
HapII	CCGG	4 cut(s)	77, 89, 116, 206
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	5 cut(s)	70, 250, 256, 272, 323
Hin1I	GRCGYC	2 cut(s)	155, 270
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	5 cut(s)	68, 248, 254, 270, 321
HinP1I	GCGC	5 cut(s)	68, 248, 254, 270, 321
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HpaII	CCGG	4 cut(s)	77, 89, 116, 206
HphI	GGTGA	2 cut(s)	175, 319
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	4 cut(s)	33, 102, 244, 262
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	6 cut(s)	29, 139, 157, 193, 262, 329
HpyAV	CCTTC	2 cut(s)	138, 228
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	3 cut(s)	10, 159, 198
Hsp92I	GRCGYC	2 cut(s)	155, 270
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	5 cut(s)	68, 248, 254, 270, 321
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	107, 225
LmnI	GCTCC	3 cut(s)	130, 151, 238
LpnPI	CCDG	6 cut(s)	90, 102, 118, 129, 219, 264
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	177
MalI	GATC	2 cut(s)	109, 227
MbiI	CCGCTC	2 cut(s)	146, 197
MboI	GATC	2 cut(s)	107, 225
MluCI	AATT	1 cut(s)	285
Mly113I	GGCGCC	1 cut(s)	270
MmeI	TCCRAC	2 cut(s)	125, 240
MnlI	CCTC	6 cut(s)	19, 32, 246, 304, 307, 326
MroNI	GCCGGC	1 cut(s)	88
MspI	CCGG	4 cut(s)	77, 89, 116, 206
NaeI	GCCGGC	1 cut(s)	90
NarI	GGCGCC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	2 cut(s)	107, 225
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	271
PdiI	GCCGGC	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	145
PluTI	GGCGCC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	55
SalI	GTCGAC	1 cut(s)	190
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	107, 225
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	2 cut(s)	127, 165
SfaNI	GCATC	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	271
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	3 cut(s)	141, 144, 195
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	2 cut(s)	152, 191
TasI	AATT	1 cut(s)	285
TauI	GCSGC	1 cut(s)	146
TscAI	CASTG	1 cut(s)	51
TspGWI	ACGGA	3 cut(s)	123, 177, 292
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.