Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

31361244 .. 31361991

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG180200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCAATGGCACGATCTGTTGTGGTGTTCCTAATGGCTGCACTCTTGGTAGCCTCCTTGAATGCACAATCTCCATCATCTTCACCAGCTGCATCCCCGAATGCGGCTGCTAAAACACCTAATGCAGCTGCTACCGCACCTCCACCATCAACATCTCCTACGCCTACTGTTTCACCTTCTTCATCAAAGACAGCTCCTGCGGCTACTCCTTCTCAAGCGAAGACTACACCAGAGGCTGCTCCAACTGCTTCCAAGACTTCACCACAAGCTGCTCCAACAACTTCCCCAAGTTCGTCAGATGCTACTTCTTCTAGCACACCCGTTGCTAGCTCTCCACCATCTCCTCCATCCCCTACCTCTGAATCTCAGGCAATTCCTCCCACTATAGACTCTGTACCAACTGGTGGGGCGGGTGGGGCACCTTCCCCATCCAACAATGGTATCGTTTTGAACAAGATCAACGTAGCCGGCTCGGTTGCCCTTGGAGTTGTTGCAGCTGTCTTAGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

16.08

Weight (kDa)

9.4

Isoelectric Point (pI)

88.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	404
AciI	CCGC	4 cut(s)	104, 135, 200, 410
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	103, 404
AgsI	TTSAA	2 cut(s)	61, 451
AluBI	AGCT	6 cut(s)	89, 128, 194, 269, 330, 497
AluI	AGCT	6 cut(s)	89, 128, 194, 269, 330, 497
AlwNI	CAGNNNCTG	2 cut(s)	197, 236
ApeKI	GCWGC	8 cut(s)	38, 89, 107, 125, 128, 236, 269, 494
AsuHPI	GGTGA	3 cut(s)	75, 165, 252
AsuNHI	GCTAGC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BanI	GGYRCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	8 cut(s)	25, 76, 94, 115, 137, 223, 256, 506
BccI	CCATC	5 cut(s)	82, 154, 346, 355, 436
BfaI	CTAG	2 cut(s)	312, 327
BfmI	CTRYAG	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	2 cut(s)	101, 289
BmtI	GCTAGC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 404
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	3 cut(s)	92, 347, 428
BseLI	CCNNNNNNNGG	2 cut(s)	103, 404
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	8 cut(s)	25, 76, 94, 115, 137, 223, 256, 506
BsgI	GTGCAG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	103, 404
BsmI	GAATGC	2 cut(s)	67, 106
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	14, 456
BspACI	CCGC	4 cut(s)	104, 135, 200, 410
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	2 cut(s)	14, 456
BssT1I	CCWWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	328, 469
BstDEI	CTNAG	2 cut(s)	366, 502
BstF5I	GGATG	3 cut(s)	92, 347, 428
BstKTI	GATC	2 cut(s)	17, 459
BstMBI	GATC	2 cut(s)	14, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 200, 245, 416
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	8 cut(s)	25, 76, 94, 115, 137, 223, 256, 506
BstV2I	GAAGAC	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	92, 347, 428
Cac8I	GCNNGC	2 cut(s)	328, 469
CaiI	CAGNNNCTG	2 cut(s)	197, 236
Cfr10I	RCCGGY	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	395
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	366, 502
DpnI	GATC	2 cut(s)	16, 458
DpnII	GATC	2 cut(s)	14, 456
Eco130I	CCWWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaiI	YATR	2 cut(s)	386, 509
FauI	CCCGC	1 cut(s)	403
FokI	GGATG	3 cut(s)	79, 334, 415
FspBI	CTAG	2 cut(s)	312, 327
HapII	CCGG	1 cut(s)	468
HinfI	GANTC	2 cut(s)	362, 389
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	75, 165, 252
Hpy188I	TCNGA	2 cut(s)	298, 361
HpyAV	CCTTC	3 cut(s)	186, 219, 432
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	5 cut(s)	41, 65, 92, 125, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 200, 245, 416
HpyF3I	CTNAG	2 cut(s)	366, 502
HpySE526I	ACGT	1 cut(s)	462
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	14, 456
LmnI	GCTCC	3 cut(s)	199, 244, 277
LpnPI	CCDG	6 cut(s)	99, 210, 243, 353, 387, 481
Lsp1109I	GCAGC	8 cut(s)	25, 76, 94, 115, 137, 223, 256, 506
LweI	GCATC	2 cut(s)	101, 289
MaeI	CTAG	2 cut(s)	312, 327
MaeII	ACGT	1 cut(s)	462
MalI	GATC	2 cut(s)	16, 458
MboI	GATC	2 cut(s)	14, 456
MboII	GAAGA	4 cut(s)	72, 171, 232, 300
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	372
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	3 cut(s)	266, 299, 456
MnlI	CCTC	6 cut(s)	64, 150, 226, 354, 367, 387
MroNI	GCCGGC	1 cut(s)	467
MspA1I	CMGCKG	3 cut(s)	89, 128, 497
MspI	CCGG	1 cut(s)	468
Mva1269I	GAATGC	2 cut(s)	67, 106
MwoI	GCNNNNNNNGC	4 cut(s)	134, 200, 245, 416
NaeI	GCCGGC	1 cut(s)	469
NdeII	GATC	2 cut(s)	14, 456
NgoMIV	GCCGGC	1 cut(s)	467
NheI	GCTAGC	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	420
PctI	GAATGC	2 cut(s)	67, 106
PdiI	GCCGGC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	404
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	420
PstNI	CAGNNNCTG	2 cut(s)	197, 236
PvuII	CAGCTG	3 cut(s)	89, 128, 497
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
Sau3AI	GATC	2 cut(s)	14, 456
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	2 cut(s)	101, 289
SfcI	CTRYAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	4 cut(s)	104, 135, 200, 410
SspMI	CTAG	2 cut(s)	312, 327
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	465
TasI	AATT	1 cut(s)	372
TauI	GCSGC	2 cut(s)	107, 203
TfiI	GAWTC	1 cut(s)	362
TseI	GCWGC	8 cut(s)	38, 89, 107, 125, 128, 236, 269, 494
TspDTI	ATGAA	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	404
XspI	CTAG	2 cut(s)	312, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.