Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009652

Physical Location & Seq

Genomic Coordinates Forward (+)

2495002 .. 2495642

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G034100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTCGGTCCACCAATGCGGTTCTTGTTCTGATGGCTGCTCTTTTGGTGGCCTCAACAAGGGCACAATCCCCTACATCTTCACCAACCAAGTCACCTGCAGCTTCTCCATCGAGCACCACAACATCAGCTGCTCCTTCTCCATCGAGCCCTCCACCTAAGGCTGCGTCTTCTCCTTCTCCATCGAGCACTCCACCTAAGGCTGCCGCTCCCTCTCCATCCACCACTTCACCGGCTGCTAGTGAGCCCACTGCCGACTCCCCGCCTTCTCCTCCCTCATCTTCCTCTGTCATTTCTCCCTCTTCACGAGAGGCTCCCGCACCCGGCCCTAGCAGTGCCGCTTTGAATAGGTTTGCAGTCACCAGATCTGTAGCAGCTGGGGTTTTCGCTGCTATCTTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

12.93

Weight (kDa)

11.45

Isoelectric Point (pI)

115.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11830
prunus_persica	Prupe.3G034100_v2.0.a1 Prupe.3G034300_v2.0.a1 Prupe.6G147700_v2.0.a1 Prupe.8G065400_v2.0.a1 Prupe.8G065500_v2.0.a1 Prupe.8G065600_v2.0.a1 Prupe.8G065700_v2.0.a1 Prupe.8G065800_v2.0.a1 Prupe.8G066000_v2.0.a1 Prupe.8G066100_v2.0.a1 Prupe.8G066200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0271461
rosa_laevigata	RLG00000013739
rosa_multiflora	Rmu_sc0001679.1_g000013
rosa_roxburghii	Rroxscaffold_7G00197000
rosa_rugosa	Rorug06G0060900.1
rosa_samantha	Rh6AG180200 Rh6BG183300 Rh6CG180000 Rh6DG171900
rosa_wichuraiana	Rw6G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	106
Acc36I	ACCTGC	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	5 cut(s)	20, 207, 263, 318, 339
AfiI	CCNNNNNNNGG	2 cut(s)	60, 323
AgsI	TTSAA	1 cut(s)	346
AluBI	AGCT	3 cut(s)	104, 131, 377
AluI	AGCT	3 cut(s)	104, 131, 377
Alw21I	GWGCWC	2 cut(s)	119, 191
AoxI	GGCC	2 cut(s)	51, 325
ApeKI	GCWGC	8 cut(s)	38, 101, 131, 164, 203, 236, 374, 389
AspS9I	GGNCC	2 cut(s)	9, 326
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	4 cut(s)	75, 87, 222, 352
AvaII	GGWCC	1 cut(s)	9
AxyI	CCTNAGG	2 cut(s)	159, 198
BaeGI	GKGCMC	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	152, 249
BauI	CACGAG	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	119, 191
BbvI	GCAGC	8 cut(s)	25, 113, 118, 151, 190, 223, 376, 386
BccI	CCATC	5 cut(s)	28, 118, 151, 190, 226
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	2 cut(s)	240, 330
BfmI	CTRYAG	2 cut(s)	99, 369
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	9, 326
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 323
Bse118I	RCCGGY	1 cut(s)	232
Bse21I	CCTNAGG	2 cut(s)	159, 198
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	60, 323
BseRI	GAGGAG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	8 cut(s)	25, 113, 118, 151, 190, 223, 376, 386
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	53, 327
BsiHKAI	GWGCWC	2 cut(s)	119, 191
BsiSI	CCGG	2 cut(s)	233, 324
BslI	CCNNNNNNNGG	2 cut(s)	60, 323
BsnI	GGCC	2 cut(s)	53, 327
Bsp1286I	GDGCHC	5 cut(s)	67, 119, 152, 191, 249
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	5 cut(s)	20, 207, 263, 318, 339
BspANI	GGCC	2 cut(s)	53, 327
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssMI	GATC	1 cut(s)	365
BssSI	CACGAG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	159, 198
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	2 cut(s)	99, 369
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	8 cut(s)	25, 113, 118, 151, 190, 223, 376, 386
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu36I	CCTNAGG	2 cut(s)	159, 198
BsuRI	GGCC	2 cut(s)	53, 327
BtsCI	GGATG	1 cut(s)	218
BtsI	GCAGTG	2 cut(s)	249, 340
BtsIMutI	CAGTG	2 cut(s)	249, 340
BveI	ACCTGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	9, 326
CseI	GACGC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	159, 198
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	152, 249
Eco47I	GGWCC	1 cut(s)	9
Eco81I	CCTNAGG	2 cut(s)	159, 198
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	152, 249
FaiI	YATR	1 cut(s)	404
FauI	CCCGC	2 cut(s)	270, 325
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	2 cut(s)	152, 249
FspBI	CTAG	2 cut(s)	240, 330
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	53, 327
HapII	CCGG	2 cut(s)	233, 324
HgaI	GACGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	233, 324
HphI	GGTGA	4 cut(s)	75, 87, 222, 352
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	306
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	147, 186, 276
HpyCH4V	TGCA	2 cut(s)	101, 356
HpyF3I	CTNAG	2 cut(s)	159, 198
Kzo9I	GATC	1 cut(s)	365
LmnI	GCTCC	3 cut(s)	139, 214, 319
LpnPI	CCDG	5 cut(s)	111, 246, 337, 363, 376
Lsp1109I	GCAGC	8 cut(s)	25, 113, 118, 151, 190, 223, 376, 386
MaeI	CTAG	2 cut(s)	240, 330
MaeIII	GTNAC	2 cut(s)	93, 358
MalI	GATC	1 cut(s)	367
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	1 cut(s)	365
MboII	GAAGA	4 cut(s)	72, 162, 273, 294
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	5 cut(s)	67, 119, 152, 191, 249
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	8 cut(s)	64, 162, 223, 282, 286, 295, 304, 310
MspA1I	CMGCKG	2 cut(s)	131, 377
MspI	CCGG	2 cut(s)	233, 324
MspR9I	CCNGG	1 cut(s)	324
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	1 cut(s)	365
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	93, 358
PaqCI	CACCTGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	9, 326
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	365
PvuII	CAGCTG	2 cut(s)	131, 377
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	2 cut(s)	9, 326
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	5 cut(s)	67, 119, 152, 191, 249
SetI	ASST	7 cut(s)	100, 106, 133, 160, 199, 353, 379
SfcI	CTRYAG	2 cut(s)	99, 369
SinI	GGWCC	1 cut(s)	9
SsiI	CCGC	5 cut(s)	20, 207, 263, 318, 339
SspMI	CTAG	2 cut(s)	240, 330
StyD4I	CCNGG	1 cut(s)	322
TaqI	TCGA	3 cut(s)	113, 146, 185
TauI	GCSGC	2 cut(s)	209, 341
TscAI	CASTG	2 cut(s)	256, 340
TseFI	GTSAC	2 cut(s)	93, 358
TseI	GCWGC	8 cut(s)	38, 101, 131, 164, 203, 236, 374, 389
Tsp45I	GTSAC	2 cut(s)	93, 358
TspRI	CASTG	2 cut(s)	256, 340
VpaK11BI	GGWCC	1 cut(s)	9
XagI	CCTNNNNNAGG	1 cut(s)	58
XspI	CTAG	2 cut(s)	240, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.