Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Reverse (-)

10910797 .. 10921090

Gene Structure 10294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12440.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4782 bp

ATGTATACAATGTGTGACTACTGTGGTGCTGAATTAGGACAACCTAAATATGAAAAGAAGGAACATGATAATCTGAAAACGTTACCATCAGATAGGGCTTGCAAAGCTTGTGCAGAGAAACAGGAGCGAGGATCTATTAAGCAGGGCAATTTAATTTCAATGCCAACCATCAGTCCAATGACTTCCTTGTCAAGTAGTGACAGTTCTGTCTCCAGCTACAGTGAATATTCTGTTGATGTGAGCTCATATGATCGTACGGCAAGCACAAATAATGATCGGTTATGGGAACCCCCTTCTGCAAACGCTTGTGGATCATTTAGTGAAGCTGAGAATTCAAATGCTTCAGAAGGTGAAATGGATGACTGGATATGGGATCCTCCTGAACCTGATGATCCAGAGGATGATGTGGAGGGTAGTGTGGCTTTCAATGACGACGACGATGAGTGTGGTGATGGCATGAAATGGGGCAAACCAAGTTCTTTGAGTCGTTCTAAAGATGAAGGAAGCGTAAGCTATAAGTTTAAAGAGGAAAAACAAAGAGCAATGGAAGCGGTTATTAATGGAAAGTTCAAGGCTCTTGTCGGTCAACTACTTACATCTTTTGATGTTGTTGGATCTTCAGGGGAGGATGGTGAAAGTTGGGTGGACATTATTACTTCTTTGTCATGGGAGGCTGCTTCATTTTTGAAACCTGATGCTGTTGTCGGTAACGCAATGGATCCAGATGGCTATGTGAAAGTAAAATGCATTGCAACCGGTGACCGCAGCCAAAGTCAACTAGTAAAAGGTATGGTCTTCAAAAAGCATGCTGCACACAAGCATATGCCAACTAAGTACAAGAACCCAAGGTTGTTGCTAATCCAGGGAATTCTTGGTCAGTCTTCAAGTGGATTGTCATCATTTGATTCAATGGAGCAGGAACAAGATTACTTGAAGTCCGTCACTGAAATGCTAGAACAATGTCATCCAAATGTGGTTTTAGTGGAAAAAACTGTCTCTCGTGATATTCAAGAATCTATTCTTGCAAAAAAAATGACACTGGTCTATGACATGAAGCTTCACCGACTACAGAGGATTGCTCTTTGTACTGGATCACCAATTTTATCATCAGATACTATGACGAGTCAAAAGCTAAAGCAGTGTGACTCTTTTCACATACAGAAGTTTATAGAGGAACATGCTGGTTTGGGTGGAGGAAAGATGCCAAGTAAAACATTGATGTTTATTGAGGGCTGTCCTACACGCCGGGGTGGTACGATTTTGCTGAAAGGAGCACAGAGTGATGAATTGAAGAAGATCAAGTGTGTAGTGCAGTGTGCAGTTATCTTGGCATATCATTTAATACTTGAGACTTCTTTCCTTGTTGACCAGAGATCAATGTTCTCTGCACATCCTTTGTTTGGTGAAGCAAATCACGTGTCCGTGGAAGTAGCAAACCAGTGTTCCGCTAGTAACAAATCCTTTAATTTAGCATCTGGTAATTCATGCATTCCACATCATAGGGAGTCCAGTGGTGAAACTGCGTCAGATGCAGTTGATATTCCCATTTCTGATGGATTCCATGAAGGATCTTCCCAAAATGCTGACTTGGAATTTCAAGGTAGCCCCACATTATATGAACCATACAATCCTGCCATATTTTCTGGCTTCTTGTCCCTTTCAGCATCACTAAAGAAAGTTATAGGGGAAAGCTTGCCTCTAGCATCTACTTCTTATCAATCTCTCTCTTCATACTTTGGATTAAATGGAAGAGAACTGAATGATCAGATTACAAACTCTATTTCTATTTCAACATCTCCAGAGGCGACTGATCAGTGTGATGTTGAAGATAGAGGGAGTTCTGATGAAGAGAGGCCACTCAGGGGTGGAGAAGTCCAGTCTCCATTTACATGCACTGAATCTTCTCTTGAGATTGAAAAGGATGGTGGTAACAATGAAGACCCAAAGCAAAGCAAGAATGACATCAGCAAAGTGTTGGATTCCCAGAGTATTCTGGTTTTGATGTCGAGAAAGAATGCTTTTAAAGGGACTGTTTGTGAGCAAAGCCATTTTTCTCATATCATGTTCTACAAGAATTTTGATGTGCCGATCGGGAAGTTTCTACAGGACAATATACTGAATCAGCGAAGCCATTGCACAGCATGTGGTGAGCTACCAGAAGCTCACTTGTATGGTTATGCACATCATAACAAGCAGCTTACCATACGGGTTAAACGCCTGCGTGCTGAGCATTTGTCTGGTGAAGCTGAAGGAAAGCTTTGGATGTGGAGTCGATGTGGTACATGTAAATCTCAGAAGGGAAAATCAAAGTGTACAAAACGAGTATTGATTTCCAGTGCTGCACGTTGTCTGTCATTTGGAAATTTCCTGGAGCTCAATTTTTCAAACCACTATCTGTCTAATATATTTTCTACCTGCGGCCATTCTTTGCACACAGACTTTCTCTACTTCTTTGGATTAGGCCCCATGGTTGCTATGTTCAAAAATTCCCCGGTCACAATATATACTGTGTTTGTGCCTCCTCTGAAACTTCCATTCAGCAATTCAATTAGACAAGATTGGTTTGCAAAAGAAATTGAGAATGTACTAGAGAAAGGATATATGCTGTTAAGTGAGGTTGGCGATTCGTTGAAGAAGATTAGGTCTCAGTTTGATGGCAAGACTTTGAAACTACAAGGCTCGTTGAAACAATTCTCTGACATCGAAGATATGCTAAATCAAGAAGAATCTGAGCGCGAGGTAAACATTCACAATTCTGTTAATGAGAATAGGAACTCAGGCCAAGCCGCTTACAAACTTCTTGGCTTTAACCGTGTACATTGGGAACTTCTTCTTCAATCATGCATTTGGGATCTGCGCTTGCATTCGTTACTGTCACCAACTCCAATGATGATCCAGTCCATGGCTGCTGATAAGGTAAGCGAAGAAGTGAATTCAGGTATTCATGGCATTAGGGGAGAGACTTTGAGCGGAAGAATTATGGGAAGAGGTGAAAACTTCACTGATGGTTCTTCCCATATAGAAGTTGAGTTAGATATATCTGCAGAAGCAGATGAGTTTCCAATTAAGGAAATTCCAATTGGTGGTCCTGTTGAAGAGTCTGAAAGAGCTGATCAACTTAATGTGTCTATTTTGCCTGAGGGTCTTCAGATACCGAATGTGGGTTGTTCAAGCCCAAAAAGATATGCTGACCGTGAGTCCAATCCTAGGCCCAACGGCTCCACTGATAGTCATTCTGTCAAGTATCTGGAAGGGAATATTACTTTGGCTGATGAACTAGATGAAGATAGAAGAATCCCTGTTTCCATGGAAAATGAGGATTCTTGTTCTATTGTTGATTCAAGTCTGTCACTGATGGACACTTCTCTGCACTCACGATCATCCATATTTGACAGTTCAAGTGATTGGTTTTGGGCGCCCTTCTCTGAAATTCGACAAGTAGGTATGAAAGATCTACAAAGAGTCCTCCCAAGGTTTGAAGCCATGAGTAGCTATACATCACAATACTTGCCCACGGCATATCAGTTGATCACAGAGGAAGGGCAAATGTTGCACATTCCTCTAGGGACTGATAAGTATATAGTGTCGGACTATGATGGTGAACTGTCAAGTGTAATTGCTTGTGCACTGGCCTTTTTGAAAGATCCACCTCTTCAAACAGATGGCCTTGTTAATGACAATAGTGGAATTGTTGCCAGAACATTTGAGAATTTACAGAGTCTGACTCGAGTTCCTACTATTTCTTTGCCGCATCAGACCTCAAATAGTTCTTCAGATTCTGATTCAGTCCATTCTGTGGCAAGCATTTCTTTTGATGAGTCACGCTTCTCCAGTTTTGATGGATTGAACTTGTTGGATTCTCTGGTTCCGGTAGGAACCCACCCAATGGTAACTCTAAGAGTTGGCAAGTCACTAGGCAAGGAGAAATATACTGTATTATGTCCATATGCCAATCAGTTTCGCAACCTCCGGAATCGGTGCTGCCAATCTGAGGTTGATTATATTGCTTCCCTAAGCCGTTGTAGAAACTGGGATGCTAAAGGTGGGAAGAGCAAAGCCTTTTTTGCCAAAACAGTTGATGACAGGTTGATTATAAAAGAAATCAAGAAGACAGAATTTGAGTCATTTGTAAAGTTTGCAGATGATTATTTTGAGCACGTGAACAAGTCATTTGAGAAAGGGAATCAAACTTGCCTTGCGAAAATTCTTGGGATTTATCAGGTGGTTGTGAGACAGACAAAAAGTGGGAAAGAGATCAAACATGATCTGATGGTTATGGAGAATCTAACCTTTGGTAGAAACTGCACCCGTCTGTACGATCTTAAAGGCGCTCTACATGATCGATTCAATTCGGCTACTGATGGTCCAGGAGATGTGCTTCTGGATCAGAACTTTGTCAATGACATGAACTCATCTCCATTTTATGTTAGTAACGAAGCAAAGCAAAAATTGCAACGGGCACTGTGGAATGACACGTCTTTTCTCAATTCAATCAATGTTATGGATTATTCATTGCTTGTGGGGATTGATACACACAGACAGGAGCTTGTATGTGGCATTATTGATTATCTGAGGCAGTATACATGGGATAAGCACCTAGAGTCATGGGTGAAGTCTTCACTTGTGCCAAAAAATGTGTTGCCGACTGTTATCTCTCCTAAAGAGTACAAGAGGAGATTCAGAAAGTTCATGTCGAAGAATATACGGAGTGTCCCAGATCACTGGTGCTCCTCAGAACCCTCTGATCCTTTCAAACAAAATCCCAAAGGAAAGGGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

1594

Amino Acids

177.47

Weight (kDa)

5.53

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	214 - 449	1.5e-20	TCP-1/cpn60 chaperonin family
PIP5K	PF01504	1280 - 1341	5.6e-10	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4094
AasI	GACNNNNNNGTC	2 cut(s)	187, 206
Acc36I	ACCTGC	1 cut(s)	2423
AccB1I	GGYRCC	1 cut(s)	3415
AccB7I	CCANNNNNTGG	4 cut(s)	2902, 3083, 3796, 3886
AccBSI	CCGCTC	1 cut(s)	2970
AccI	GTMKAC	2 cut(s)	5, 4580
AccII	CGCG	1 cut(s)	2736
AccIII	TCCGGA	1 cut(s)	3969
AciI	CCGC	7 cut(s)	551, 763, 1446, 2418, 2787, 2970, 3749
AclI	AACGTT	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	2419
AcuI	CTGAAG	5 cut(s)	327, 603, 2268, 3131, 3756
AcvI	CACGTG	2 cut(s)	1417, 4159
AcyI	GRCGYC	1 cut(s)	3416
AdeI	CACNNNGTG	1 cut(s)	1280
AfiI	CCNNNNNNNGG	9 cut(s)	1400, 1862, 2902, 3083, 3161, 3207, 3796, 3886, 3991
AflIII	ACRYGT	3 cut(s)	1416, 2282, 4473
AgeI	ACCGGT	1 cut(s)	755
AhdI	GACNNNNNGTC	1 cut(s)	3196
AhlI	ACTAGT	1 cut(s)	778
AjiI	CACGTC	1 cut(s)	4476
AjnI	CCWGG	3 cut(s)	861, 2367, 4366
AjuI	GAANNNNNNNTTGG	4 cut(s)	3063, 3095, 3248, 3280
Alw21I	GWGCWC	6 cut(s)	245, 1276, 2376, 3628, 4158, 4730
Alw26I	GTCTC	7 cut(s)	214, 1000, 1343, 1884, 2649, 2954, 4225
Alw44I	GTGCAC	1 cut(s)	3624
AlwNI	CAGNNNCTG	2 cut(s)	3721, 3779
Ama87I	CYCGRG	1 cut(s)	3726
Aor13HI	TCCGGA	1 cut(s)	3969
AoxI	GGCC	7 cut(s)	1853, 2419, 2461, 2779, 3209, 3630, 3664
ApaLI	GTGCAC	1 cut(s)	3624
ApeKI	GCWGC	7 cut(s)	674, 765, 809, 2194, 2339, 2906, 3981
ArsI	GACNNNNNNTTYG	2 cut(s)	1403, 1435
AseI	ATTAAT	1 cut(s)	558
AsiGI	ACCGGT	1 cut(s)	755
Asp700I	GAANNNNTTC	3 cut(s)	1017, 2690, 2829
AspA2I	CCTAGG	1 cut(s)	3206
AspLEI	GCGC	4 cut(s)	2736, 2859, 3418, 4331
AspS9I	GGNCC	4 cut(s)	2462, 3086, 3210, 4364
AsuC2I	CCSGG	2 cut(s)	1247, 2492
AvaI	CYCGRG	1 cut(s)	3726
AvaII	GGWCC	2 cut(s)	3086, 4364
AvrII	CCTAGG	1 cut(s)	3206
AxyI	CCTNAGG	1 cut(s)	3138
BaeGI	GKGCMC	2 cut(s)	3628, 4462
BamHI	GGATCC	2 cut(s)	373, 718
BanI	GGYRCC	1 cut(s)	3415
BanII	GRGCYC	2 cut(s)	245, 2376
BauI	CACGAG	1 cut(s)	999
BbrPI	CACGTG	2 cut(s)	1417, 4159
BbsI	GAAGAC	6 cut(s)	787, 873, 1944, 3137, 4115, 4608
Bbv12I	GWGCWC	6 cut(s)	245, 1276, 2376, 3628, 4158, 4730
BbvI	GCAGC	7 cut(s)	661, 777, 796, 2206, 2326, 2893, 3968
BceAI	ACGGC	4 cut(s)	273, 3232, 3531, 4002
BcgI	CGANNNNNNTGC	2 cut(s)	2115, 2149
BciT130I	CCWGG	3 cut(s)	863, 2369, 4368
BclI	TGATCA	4 cut(s)	1762, 1810, 3112, 3528
BcnI	CCSGG	2 cut(s)	1247, 2492
BcoDI	GTCTC	7 cut(s)	214, 1000, 1343, 1884, 2649, 2954, 4225
BcuI	ACTAGT	1 cut(s)	778
BfmI	CTRYAG	4 cut(s)	217, 1067, 2102, 3042
BfoI	RGCGCY	2 cut(s)	3419, 4332
BfuAI	ACCTGC	1 cut(s)	2423
BglII	AGATCT	1 cut(s)	3451
BlnI	CCTAGG	1 cut(s)	3206
BlpI	GCTNAGC	1 cut(s)	2226
Bme1390I	CCNGG	5 cut(s)	863, 1247, 2369, 2492, 4368
Bme18I	GGWCC	2 cut(s)	3086, 4364
BmeRI	GACNNNNNGTC	1 cut(s)	3196
BmeT110I	CYCGRG	1 cut(s)	3726
BmgBI	CACGTC	1 cut(s)	4476
BmgT120I	GGNCC	4 cut(s)	2462, 3086, 3210, 4364
BmiI	GGNNCC	8 cut(s)	288, 375, 720, 2464, 3220, 3417, 3867, 3877
BmrFI	CCNGG	5 cut(s)	863, 1247, 2369, 2492, 4368
BmrI	ACTGGG	1 cut(s)	4039
BmsI	GCATC	8 cut(s)	685, 1191, 1481, 1519, 1673, 1712, 3760, 4024
BmuI	ACTGGG	1 cut(s)	4039
BoxI	GACNNNNGTC	1 cut(s)	1040
BpiI	GAAGAC	6 cut(s)	787, 873, 1944, 3137, 4115, 4608
BplI	GAGNNNNNCTC	4 cut(s)	1063, 1095, 3709, 3741
BpmI	CTGGAG	4 cut(s)	196, 1782, 2390, 3814
Bpu10I	CCTNAGC	1 cut(s)	4013
Bpu1102I	GCTNAGC	1 cut(s)	2226
BpuEI	CTTGAG	2 cut(s)	1367, 1928
BpuMI	CCSGG	2 cut(s)	1247, 2492
Bsa29I	ATCGAT	1 cut(s)	4342
BsaAI	YACGTR	2 cut(s)	1417, 4159
BsaBI	GATNNNNATC	1 cut(s)	895
BsaHI	GRCGYC	1 cut(s)	3416
BsaI	GGTCTC	1 cut(s)	2649
BsaWI	WCCGGW	3 cut(s)	755, 3868, 3969
BsaXI	ACNNNNNCTCC	4 cut(s)	2260, 2290, 4712, 4742
Bsc4I	CCNNNNNNNGG	9 cut(s)	1400, 1862, 2902, 3083, 3161, 3207, 3796, 3886, 3991
Bse118I	RCCGGY	1 cut(s)	755
Bse21I	CCTNAGG	1 cut(s)	3138
Bse3DI	GCAATG	5 cut(s)	549, 720, 747, 2131, 4511
Bse8I	GATNNNNATC	1 cut(s)	895
BseAI	TCCGGA	1 cut(s)	3969
BseBI	CCWGG	3 cut(s)	863, 2369, 4368
BseCI	ATCGAT	1 cut(s)	4342
BseGI	GGATG	9 cut(s)	364, 406, 634, 964, 1390, 1927, 2268, 3380, 4039
BseJI	GATNNNNATC	1 cut(s)	895
BseLI	CCNNNNNNNGG	9 cut(s)	1400, 1862, 2902, 3083, 3161, 3207, 3796, 3886, 3991
BseMI	GCAATG	5 cut(s)	549, 720, 747, 2131, 4511
BseRI	GAGGAG	3 cut(s)	2511, 4687, 4720
BseSI	GKGCMC	2 cut(s)	3628, 4462
BseXI	GCAGC	7 cut(s)	661, 777, 796, 2206, 2326, 2893, 3968
BsgI	GTGCAG	8 cut(s)	132, 795, 1331, 1338, 1371, 2325, 3353, 4288
Bsh1236I	CGCG	1 cut(s)	2736
Bsh1285I	CGRYCG	1 cut(s)	2091
BshFI	GGCC	7 cut(s)	1855, 2421, 2463, 2781, 3211, 3632, 3666
BshNI	GGYRCC	1 cut(s)	3415
BshTI	ACCGGT	1 cut(s)	755
BshVI	ATCGAT	1 cut(s)	4342
BsiEI	CGRYCG	1 cut(s)	2091
BsiHKAI	GWGCWC	6 cut(s)	245, 1276, 2376, 3628, 4158, 4730
BsiHKCI	CYCGRG	1 cut(s)	3726
BsiSI	CCGG	5 cut(s)	756, 1246, 2492, 3869, 3970
BsiWI	CGTACG	1 cut(s)	254
BslFI	GGGAC	4 cut(s)	1639, 2041, 3580, 4697
BslI	CCNNNNNNNGG	9 cut(s)	1400, 1862, 2902, 3083, 3161, 3207, 3796, 3886, 3991
BsmAI	GTCTC	7 cut(s)	214, 1000, 1343, 1884, 2649, 2954, 4225
BsmFI	GGGAC	4 cut(s)	1639, 2041, 3580, 4697
BsmI	GAATGC	3 cut(s)	1488, 2020, 2863
BsnI	GGCC	7 cut(s)	1855, 2421, 2463, 2781, 3211, 3632, 3666
Bso31I	GGTCTC	1 cut(s)	2649
BsoBI	CYCGRG	1 cut(s)	3726
Bsp1286I	GDGCHC	7 cut(s)	245, 1276, 2376, 3628, 4158, 4462, 4730
Bsp13I	TCCGGA	1 cut(s)	3969
Bsp1407I	TGTACA	2 cut(s)	2312, 2815
Bsp1720I	GCTNAGC	1 cut(s)	2226
Bsp19I	CCATGG	3 cut(s)	2466, 2901, 3306
BspACI	CCGC	7 cut(s)	551, 763, 1446, 2418, 2787, 2970, 3749
BspANI	GGCC	7 cut(s)	1855, 2421, 2463, 2781, 3211, 3632, 3666
BspDI	ATCGAT	1 cut(s)	4342
BspEI	TCCGGA	1 cut(s)	3969
BspFNI	CGCG	1 cut(s)	2736
BspLI	GGNNCC	8 cut(s)	288, 375, 720, 2464, 3220, 3417, 3867, 3877
BspMAI	CTGCAG	1 cut(s)	3046
BspMI	ACCTGC	1 cut(s)	2423
BspQI	GCTCTTC	1 cut(s)	4043
BspT107I	GGYRCC	1 cut(s)	3415
BspTNI	GGTCTC	1 cut(s)	2649
BsrBI	CCGCTC	1 cut(s)	2970
BsrDI	GCAATG	5 cut(s)	549, 720, 747, 2131, 4511
BsrFI	RCCGGY	1 cut(s)	755
BsrGI	TGTACA	2 cut(s)	2312, 2815
BssAI	RCCGGY	1 cut(s)	755
BssNAI	GTATAC	2 cut(s)	6, 4581
BssNI	GRCGYC	1 cut(s)	3416
BssSI	CACGAG	1 cut(s)	999
BssT1I	CCWWGG	6 cut(s)	845, 2466, 2901, 3206, 3306, 3470
Bst1107I	GTATAC	2 cut(s)	6, 4581
Bst2BI	CACGAG	1 cut(s)	999
Bst2UI	CCWGG	3 cut(s)	863, 2369, 4368
Bst6I	CTCTTC	7 cut(s)	1732, 1744, 1842, 2980, 3090, 3657, 4043
BstACI	GRCGYC	1 cut(s)	3416
BstAPI	GCANNNNNTGC	2 cut(s)	3550, 4450
BstAUI	TGTACA	2 cut(s)	2312, 2815
BstBAI	YACGTR	2 cut(s)	1417, 4159
BstC8I	GCNNGC	8 cut(s)	100, 262, 807, 1694, 2219, 2223, 2861, 3802
BstDSI	CCRYGG	5 cut(s)	1422, 2466, 2901, 3306, 3513
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	9 cut(s)	364, 406, 634, 964, 1390, 1927, 2268, 3380, 4039
BstFNI	CGCG	1 cut(s)	2736
BstH2I	RGCGCY	2 cut(s)	3419, 4332
BstHHI	GCGC	4 cut(s)	2736, 2859, 3418, 4331
BstMAI	GTCTC	7 cut(s)	214, 1000, 1343, 1884, 2649, 2954, 4225
BstMCI	CGRYCG	1 cut(s)	2091
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 548, 1529, 2227, 3550, 4064, 4450
BstNI	CCWGG	3 cut(s)	863, 2369, 4368
BstNSI	RCATGY	5 cut(s)	809, 1181, 1893, 2145, 2286
BstPAI	GACNNNNGTC	1 cut(s)	1040
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	5 cut(s)	861, 1245, 2367, 2490, 4366
BstSFI	CTRYAG	4 cut(s)	217, 1067, 2102, 3042
BstSLI	GKGCMC	2 cut(s)	3628, 4462
BstUI	CGCG	1 cut(s)	2736
BstV1I	GCAGC	7 cut(s)	661, 777, 796, 2206, 2326, 2893, 3968
BstV2I	GAAGAC	6 cut(s)	787, 873, 1944, 3137, 4115, 4608
BstX2I	RGATCY	8 cut(s)	131, 373, 614, 718, 1568, 2851, 3451, 3643
BstXI	CCANNNNNNTGG	1 cut(s)	4722
BstYI	RGATCY	8 cut(s)	131, 373, 614, 718, 1568, 2851, 3451, 3643
BstZ17I	GTATAC	2 cut(s)	6, 4581
Bsu15I	ATCGAT	1 cut(s)	4342
Bsu36I	CCTNAGG	1 cut(s)	3138
BsuRI	GGCC	7 cut(s)	1855, 2421, 2463, 2781, 3211, 3632, 3666
BsuTUI	ATCGAT	1 cut(s)	4342
BtgI	CCRYGG	5 cut(s)	1422, 2466, 2901, 3306, 3513
BtrI	CACGTC	1 cut(s)	4476
BtsCI	GGATG	9 cut(s)	364, 406, 634, 964, 1390, 1927, 2268, 3380, 4039
BtsI	GCAGTG	2 cut(s)	1145, 1319
BveI	ACCTGC	1 cut(s)	2423
Cac8I	GCNNGC	8 cut(s)	100, 262, 807, 1694, 2219, 2223, 2861, 3802
CaiI	CAGNNNCTG	2 cut(s)	3721, 3779
CfoI	GCGC	4 cut(s)	2736, 2859, 3418, 4331
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	4 cut(s)	2462, 3086, 3210, 4364
ClaI	ATCGAT	1 cut(s)	4342
CseI	GACGC	1 cut(s)	1512
CspAI	ACCGGT	1 cut(s)	755
DinI	GGCGCC	1 cut(s)	3417
DraI	TTTAAA	2 cut(s)	523, 2023
DraIII	CACNNNGTG	1 cut(s)	1280
DrdI	GACNNNNNNGTC	2 cut(s)	187, 206
DriI	GACNNNNNGTC	1 cut(s)	3196
DseDI	GACNNNNNNGTC	2 cut(s)	187, 206
EaeI	YGGCCR	1 cut(s)	2419
Eam1104I	CTCTTC	7 cut(s)	1732, 1744, 1842, 2980, 3090, 3657, 4043
Eam1105I	GACNNNNNGTC	1 cut(s)	3196
EarI	CTCTTC	7 cut(s)	1732, 1744, 1842, 2980, 3090, 3657, 4043
Ecl136II	GAGCTC	2 cut(s)	243, 2374
Eco130I	CCWWGG	6 cut(s)	845, 2466, 2901, 3206, 3306, 3470
Eco24I	GRGCYC	2 cut(s)	245, 2376
Eco31I	GGTCTC	1 cut(s)	2649
Eco47I	GGWCC	2 cut(s)	3086, 4364
Eco53kI	GAGCTC	2 cut(s)	243, 2374
Eco57I	CTGAAG	5 cut(s)	327, 603, 2268, 3131, 3756
Eco72I	CACGTG	2 cut(s)	1417, 4159
Eco81I	CCTNAGG	1 cut(s)	3138
Eco88I	CYCGRG	1 cut(s)	3726
Eco91I	GGTNACC	1 cut(s)	758
EcoICRI	GAGCTC	2 cut(s)	243, 2374
EcoO109I	RGGNCCY	1 cut(s)	2462
EcoO65I	GGTNACC	1 cut(s)	758
EcoRI	GAATTC	3 cut(s)	331, 867, 2932
EcoRII	CCWGG	3 cut(s)	861, 2367, 4366
EcoT14I	CCWWGG	6 cut(s)	845, 2466, 2901, 3206, 3306, 3470
EcoT22I	ATGCAT	3 cut(s)	749, 1490, 2846
EcoT38I	GRGCYC	2 cut(s)	245, 2376
EgeI	GGCGCC	1 cut(s)	3417
EheI	GGCGCC	1 cut(s)	3417
ErhI	CCWWGG	6 cut(s)	845, 2466, 2901, 3206, 3306, 3470
FalI	AAGNNNNNCTT	4 cut(s)	2241, 2273, 3793, 3825
FaqI	GGGAC	4 cut(s)	1639, 2041, 3580, 4697
FauNDI	CATATG	3 cut(s)	247, 822, 3946
FbaI	TGATCA	4 cut(s)	1762, 1810, 3112, 3528
FblI	GTMKAC	2 cut(s)	5, 4580
FokI	GGATG	9 cut(s)	371, 413, 641, 951, 1377, 1934, 2275, 3367, 4046
FriOI	GRGCYC	2 cut(s)	245, 2376
GlaI	GCGC	4 cut(s)	2735, 2858, 3417, 4330
GsuI	CTGGAG	4 cut(s)	196, 1782, 2390, 3814
HaeII	RGCGCY	2 cut(s)	3419, 4332
HaeIII	GGCC	7 cut(s)	1855, 2421, 2463, 2781, 3211, 3632, 3666
HapII	CCGG	5 cut(s)	756, 1246, 2492, 3869, 3970
HgaI	GACGC	1 cut(s)	1512
HhaI	GCGC	4 cut(s)	2736, 2859, 3418, 4331
Hin1I	GRCGYC	1 cut(s)	3416
Hin6I	GCGC	4 cut(s)	2734, 2857, 3416, 4329
HinP1I	GCGC	4 cut(s)	2734, 2857, 3416, 4329
HincII	GTYRAC	3 cut(s)	587, 776, 1366
HindII	GTYRAC	3 cut(s)	587, 776, 1366
HindIII	AAGCTT	4 cut(s)	105, 1055, 1690, 2255
HpaII	CCGG	5 cut(s)	756, 1246, 2492, 3869, 3970
Hpy99I	CGWCG	2 cut(s)	437, 440
HpyCH4IV	ACGT	5 cut(s)	80, 1416, 2344, 4158, 4475
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 548, 1529, 2227, 3550, 4064, 4450
HpySE526I	ACGT	5 cut(s)	80, 1416, 2344, 4158, 4475
Hsp92I	GRCGYC	1 cut(s)	3416
HspAI	GCGC	4 cut(s)	2734, 2857, 3416, 4329
KasI	GGCGCC	1 cut(s)	3415
Kpn2I	TCCGGA	1 cut(s)	3969
Ksp22I	TGATCA	4 cut(s)	1762, 1810, 3112, 3528
LguI	GCTCTTC	1 cut(s)	4043
LmnI	GCTCC	7 cut(s)	124, 913, 1271, 2371, 3224, 4543, 4733
Lsp1109I	GCAGC	7 cut(s)	661, 777, 796, 2206, 2326, 2893, 3968
LweI	GCATC	8 cut(s)	685, 1191, 1481, 1519, 1673, 1712, 3760, 4024
MaeII	ACGT	5 cut(s)	80, 1416, 2344, 4158, 4475
MbiI	CCGCTC	1 cut(s)	2970
MfeI	CAATTG	1 cut(s)	3078
MflI	RGATCY	8 cut(s)	131, 373, 614, 718, 1568, 2851, 3451, 3643
MhlI	GDGCHC	7 cut(s)	245, 1276, 2376, 3628, 4158, 4462, 4730
Mly113I	GGCGCC	1 cut(s)	3416
MmeI	TCCRAC	4 cut(s)	592, 1956, 3567, 3834
Mph1103I	ATGCAT	3 cut(s)	749, 1490, 2846
MroI	TCCGGA	1 cut(s)	3969
MroXI	GAANNNNTTC	3 cut(s)	1017, 2690, 2829
MslI	CAYNNNNRTG	4 cut(s)	947, 969, 1888, 2169
MspI	CCGG	5 cut(s)	756, 1246, 2492, 3869, 3970
MspR9I	CCNGG	5 cut(s)	863, 1247, 2369, 2492, 4368
MunI	CAATTG	1 cut(s)	3078
Mva1269I	GAATGC	3 cut(s)	1488, 2020, 2863
MvaI	CCWGG	3 cut(s)	863, 2369, 4368
MvnI	CGCG	1 cut(s)	2736
MwoI	GCNNNNNNNGC	7 cut(s)	104, 548, 1529, 2227, 3550, 4064, 4450
NarI	GGCGCC	1 cut(s)	3416
NciI	CCSGG	2 cut(s)	1247, 2492
NcoI	CCATGG	3 cut(s)	2466, 2901, 3306
NdeI	CATATG	3 cut(s)	247, 822, 3946
NlaIV	GGNNCC	8 cut(s)	288, 375, 720, 2464, 3220, 3417, 3867, 3877
NsiI	ATGCAT	3 cut(s)	749, 1490, 2846
NspI	RCATGY	5 cut(s)	809, 1181, 1893, 2145, 2286
PaeI	GCATGC	1 cut(s)	809
PaeR7I	CTCGAG	1 cut(s)	3726
PciI	ACATGT	1 cut(s)	2282
PciSI	GCTCTTC	1 cut(s)	4043
PctI	GAATGC	3 cut(s)	1488, 2020, 2863
PdmI	GAANNNNTTC	3 cut(s)	1017, 2690, 2829
Pfl23II	CGTACG	1 cut(s)	254
PflMI	CCANNNNNTGG	4 cut(s)	2902, 3083, 3796, 3886
PfoI	TCCNGGA	2 cut(s)	2367, 4366
PinAI	ACCGGT	1 cut(s)	755
Ple19I	CGATCG	1 cut(s)	2091
PluTI	GGCGCC	1 cut(s)	3419
PmaCI	CACGTG	2 cut(s)	1417, 4159
PmlI	CACGTG	2 cut(s)	1417, 4159
Ppu21I	YACGTR	2 cut(s)	1417, 4159
PscI	ACATGT	1 cut(s)	2282
PshAI	GACNNNNGTC	1 cut(s)	1040
PshBI	ATTAAT	1 cut(s)	558
PsiI	TTATAA	1 cut(s)	4094
Psp124BI	GAGCTC	2 cut(s)	245, 2376
Psp1406I	AACGTT	1 cut(s)	80
Psp6I	CCWGG	3 cut(s)	861, 2367, 4366
PspCI	CACGTG	2 cut(s)	1417, 4159
PspEI	GGTNACC	1 cut(s)	758
PspGI	CCWGG	3 cut(s)	861, 2367, 4366
PspLI	CGTACG	1 cut(s)	254
PspN4I	GGNNCC	8 cut(s)	288, 375, 720, 2464, 3220, 3417, 3867, 3877
PspPI	GGNCC	4 cut(s)	2462, 3086, 3210, 4364
PspXI	VCTCGAGB	1 cut(s)	3726
PsrI	GAACNNNNNNTAC	2 cut(s)	187, 219
PstI	CTGCAG	1 cut(s)	3046
PstNI	CAGNNNCTG	2 cut(s)	3721, 3779
PsuI	RGATCY	8 cut(s)	131, 373, 614, 718, 1568, 2851, 3451, 3643
PvuI	CGATCG	1 cut(s)	2091
RseI	CAYNNNNRTG	4 cut(s)	947, 969, 1888, 2169
SacI	GAGCTC	2 cut(s)	245, 2376
SapI	GCTCTTC	1 cut(s)	4043
Sau96I	GGNCC	4 cut(s)	2462, 3086, 3210, 4364
ScrFI	CCNGG	5 cut(s)	863, 1247, 2369, 2492, 4368
SduI	GDGCHC	7 cut(s)	245, 1276, 2376, 3628, 4158, 4462, 4730
SfaNI	GCATC	8 cut(s)	685, 1191, 1481, 1519, 1673, 1712, 3760, 4024
SfcI	CTRYAG	4 cut(s)	217, 1067, 2102, 3042
SfoI	GGCGCC	1 cut(s)	3417
Sfr274I	CTCGAG	1 cut(s)	3726
SinI	GGWCC	2 cut(s)	3086, 4364
SlaI	CTCGAG	1 cut(s)	3726
SmiMI	CAYNNNNRTG	4 cut(s)	947, 969, 1888, 2169
SmlI	CTYRAG	3 cut(s)	1346, 1907, 3726
SmoI	CTYRAG	3 cut(s)	1346, 1907, 3726
SpeI	ACTAGT	1 cut(s)	778
SphI	GCATGC	1 cut(s)	809
SsiI	CCGC	7 cut(s)	551, 763, 1446, 2418, 2787, 2970, 3749
SspDI	GGCGCC	1 cut(s)	3415
SspI	AATATT	2 cut(s)	227, 3259
SstI	GAGCTC	2 cut(s)	245, 2376
StyD4I	CCNGG	5 cut(s)	861, 1245, 2367, 2490, 4366
StyI	CCWWGG	6 cut(s)	845, 2466, 2901, 3206, 3306, 3470
TaiI	ACGT	5 cut(s)	83, 1419, 2347, 4161, 4478
TaqI	TCGA	7 cut(s)	2006, 2272, 2703, 3433, 3727, 4342, 4694
TaqII	GACCGA	1 cut(s)	572
TatI	WGTACW	6 cut(s)	834, 1085, 2312, 2584, 2815, 4665
TauI	GCSGC	3 cut(s)	2421, 2789, 3751
TseI	GCWGC	7 cut(s)	674, 765, 809, 2194, 2339, 2906, 3981
TspGWI	ACGGA	3 cut(s)	928, 1411, 4720
Van91I	CCANNNNNTGG	4 cut(s)	2902, 3083, 3796, 3886
VneI	GTGCAC	1 cut(s)	3624
VpaK11BI	GGWCC	2 cut(s)	3086, 4364
VspI	ATTAAT	1 cut(s)	558
XceI	RCATGY	5 cut(s)	809, 1181, 1893, 2145, 2286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	869
XhoI	CTCGAG	1 cut(s)	3726
XmaJI	CCTAGG	1 cut(s)	3206
XmiI	GTMKAC	2 cut(s)	5, 4580
XmnI	GAANNNNTTC	3 cut(s)	1017, 2690, 2829
Zsp2I	ATGCAT	3 cut(s)	749, 1490, 2846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.