Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8449107.1

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1192

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8449107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 790 bp

aaactgggatgctaaaggtgggaagagcaaagccttttttgccaaaacagttgatgacaggttgattataaaagaaattaagaagacagaatttgagtcatttgtaaagtttgcagatgcttattttgagcatgtgaacaagtcatttgagaagggaaatcaaacttgccttgcaaaaattcttgggatttatcaggtggttgtgagacagacaaaaagtgggaaagagatgaaacatgatctgatggttatggagaaccttaccttcggtcggaactgcacccgcctgtacgatcttaaaggtgctctacatgaccgtttcaatttggcgcctgctggtgcgggagatgttcttctggatcagaactttgtcaatgacatgaactcatctccattttatgtcagtaaccaagaaaagcaaaaattgcaacgggctctgtggaatgacacgtcttttctcaattcaatcaatgttatggattattcattgcttgttgggattgatacacacagacaggagcttgtatgtggcattattgattatctgaggcagtatacatgggacaagcacctagagtcatgggtgaagtcttcacttgtgccaaagaatgtcctgccgactgttatctctcctaaagagtacaagaggagattcagaaagttcatgtcgaagaatatatgcagtgtcccagatcactggtgctcctcagaatcctttgatccttgtgatgaatatgctgctagaaatgctgattctcccaaacaaaatccgaaaggaaaggggggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

262

Amino Acids

30.1

Weight (kDa)

8.98

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	2 cut(s)	284, 342
AclWI	GGATC	2 cut(s)	367, 714
AcsI	RAATTY	2 cut(s)	90, 178
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	291, 642
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	323, 466
AjiI	CACGTC	1 cut(s)	451
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw21I	GWGCWC	2 cut(s)	308, 705
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	367, 714
ApeKI	GCWGC	1 cut(s)	738
ApoI	RAATTY	2 cut(s)	90, 178
AspLEI	GCGC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	437
BbsI	GAAGAC	2 cut(s)	90, 583
Bbv12I	GWGCWC	2 cut(s)	308, 705
BbvI	GCAGC	1 cut(s)	725
BccI	CCATC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	573, 742
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	1 cut(s)	739
BlsI	GCNGC	1 cut(s)	740
BmgBI	CACGTC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	107
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	90, 583
BsaHI	GRCGYC	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	9, 702
Bse3DI	GCAATG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	537, 721
BseNI	ACTGG	2 cut(s)	9, 702
BseRI	GAGGAG	2 cut(s)	662, 695
BseXI	GCAGC	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	329
BsiEI	CGRYCG	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	308, 705
BslFI	GGGAC	2 cut(s)	576, 672
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	576, 672
Bsp1286I	GDGCHC	3 cut(s)	308, 437, 705
Bsp143I	GATC	5 cut(s)	239, 293, 359, 692, 719
BspACI	CCGC	2 cut(s)	284, 342
BspCNI	CTCAG	2 cut(s)	538, 720
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	367, 714
BspQI	GCTCTTC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	9, 702
BssMI	GATC	5 cut(s)	239, 293, 359, 692, 719
BssNAI	GTATAC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	330
Bst1107I	GTATAC	1 cut(s)	556
Bst4CI	ACNGT	3 cut(s)	50, 318, 623
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	546, 707
BstF5I	GGATG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	5 cut(s)	242, 296, 362, 695, 722
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	5 cut(s)	239, 293, 359, 692, 719
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 425, 747
BstNSI	RCATGY	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	725
BstV2I	GAAGAC	2 cut(s)	90, 583
BstXI	CCANNNNNNTGG	1 cut(s)	697
BstZ17I	GTATAC	1 cut(s)	556
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	2 cut(s)	689, 695
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	290, 641
CviAII	CATG	7 cut(s)	132, 237, 312, 380, 559, 580, 665
CviJI	RGCY	3 cut(s)	33, 435, 521
CviKI_1	RGCY	3 cut(s)	33, 435, 521
CviQI	GTAC	2 cut(s)	290, 641
DdeI	CTNAG	2 cut(s)	546, 707
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	5 cut(s)	241, 295, 361, 694, 721
DpnII	GATC	5 cut(s)	239, 293, 359, 692, 719
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	437
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
FaeI	CATG	7 cut(s)	135, 240, 315, 383, 562, 583, 668
FaqI	GGGAC	2 cut(s)	576, 672
FatI	CATG	7 cut(s)	131, 236, 311, 379, 558, 579, 664
FauI	CCCGC	2 cut(s)	291, 335
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	739
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	739
FspBI	CTAG	2 cut(s)	573, 742
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	739
HaeII	RGCGCY	1 cut(s)	333
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	7 cut(s)	135, 240, 315, 383, 562, 583, 668
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	5 cut(s)	96, 576, 652, 711, 753
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	137, 556
Hpy188I	TCNGA	7 cut(s)	244, 274, 364, 547, 657, 710, 772
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	2 cut(s)	137, 556
HpyAV	CCTTC	2 cut(s)	146, 275
HpyCH4III	ACNGT	3 cut(s)	50, 318, 623
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	5 cut(s)	114, 174, 280, 428, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 425, 747
HpyF3I	CTNAG	2 cut(s)	546, 707
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	7 cut(s)	135, 240, 315, 383, 562, 583, 668
HspAI	GCGC	1 cut(s)	330
KasI	GGCGCC	1 cut(s)	329
Kzo9I	GATC	5 cut(s)	239, 293, 359, 692, 719
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	518, 708
Lsp1109I	GCAGC	1 cut(s)	725
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	2 cut(s)	573, 742
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	5 cut(s)	241, 295, 361, 694, 721
MboI	GATC	5 cut(s)	239, 293, 359, 692, 719
MboII	GAAGA	5 cut(s)	35, 95, 345, 583, 683
MhlI	GDGCHC	3 cut(s)	308, 437, 705
MluCI	AATT	6 cut(s)	76, 90, 178, 323, 423, 461
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	2 cut(s)	105, 585
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	541, 640, 716
MseI	TTAA	3 cut(s)	79, 298, 788
MwoI	GCNNNNNNNGC	3 cut(s)	39, 425, 747
NarI	GGCGCC	1 cut(s)	330
NdeII	GATC	5 cut(s)	239, 293, 359, 692, 719
NlaIII	CATG	7 cut(s)	135, 240, 315, 383, 562, 583, 668
NlaIV	GGNNCC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	652, 711, 753
PkrI	GCNGC	1 cut(s)	740
PleI	GAGTC	2 cut(s)	104, 584
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	2 cut(s)	104, 584
PsiI	TTATAA	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	331
RsaI	GTAC	2 cut(s)	291, 642
RsaNI	GTAC	2 cut(s)	290, 641
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	79, 298, 788
SatI	GCNGC	1 cut(s)	739
Sau3AI	GATC	5 cut(s)	239, 293, 359, 692, 719
SchI	GAGTC	2 cut(s)	105, 585
SduI	GDGCHC	3 cut(s)	308, 437, 705
SetI	ASST	9 cut(s)	20, 63, 199, 262, 267, 305, 453, 523, 574
SfaNI	GCATC	1 cut(s)	107
SfoI	GGCGCC	1 cut(s)	331
Sse9I	AATT	6 cut(s)	76, 90, 178, 323, 423, 461
SsiI	CCGC	2 cut(s)	284, 342
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	573, 742
TaaI	ACNGT	3 cut(s)	50, 318, 623
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	669
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	6 cut(s)	76, 90, 178, 323, 423, 461
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	3 cut(s)	652, 711, 753
Tru1I	TTAA	3 cut(s)	79, 298, 788
Tru9I	TTAA	3 cut(s)	79, 298, 788
TscAI	CASTG	2 cut(s)	689, 702
TseI	GCWGC	1 cut(s)	738
TspDTI	ATGAA	5 cut(s)	246, 396, 475, 653, 745
TspRI	CASTG	2 cut(s)	689, 702
XapI	RAATTY	2 cut(s)	90, 178
XceI	RCATGY	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	2 cut(s)	573, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.