RLG00000013661
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase FAB1D

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
35324014 .. 35332229
8216 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013661

Sequence Viewer

Length: 4857 bp
ATGTATAGCATGTGTCAGTATTGTGGTGCAGAATTGACACAACCTAAAGATGAAAAGAAGGAACATGATAATCTGAAAACCTTACCATCAGATAGGGCTTGCAAAGCCTGTGCAGAAAAACAGGAGCGAGGATCTATCAAGCAGGCCAATGGAATGTCAAGGCCAACGATCAGTCCAATGACTTCCTTGTCAAGCATTGATAGTTCTGTTTCCAACTGCAGTGAATTTTCTGTTGAAGTCAACTCATATGATCGTACGGCAGGCACGAATAATGACCAGCTATGGGAACCCCCTTCTGCAAACACTTGTGGATCATCTAGCGAAACTGAGAATTCAAATTCTTCAGAAGGTGAAATGGCTGACTGGATATGGGATCCTCCTGAACCTGATGATCCGGAGGATGATGTGGAGGGTAGTGTGGCTTTCAATGACGACGATGATGATGAGTGTGGTGATGGCATGAAATGGGGCAAACCAAGTTCTTTGAGTCGCTCTAAAGATGAAGGGAGTGGGAGCTATAAGTTTAAAGAGGAAAAACAAAGAGCAATGGAAGCAGTTATTAATTGGAAGTTCAAGGCTCTTGTCAGTCAACTACTTACATCTGTTGGTGTTGTTGGATCTTCTGGGGAGGATGGTGAAAGTTGGGTGGACATCATTACTTCTTTGTCATGGGAAGCTGCTGCATTTTTGAAACCCGATGCTGTTGTTGGTAAAGCAATGGATATAGATGGCTATGTGAAAGTAAAATGCATTGCAACTGGTGATCGCTGCCAAAGTCAATTAGTAAAAGGTATGGTCTTCAAAAAGCATGCTGCACATAAGCATATGCCAATCAAGTACAAGAACCCAAGGTTGTTGCTAATCCAGGGAGTTCTTGGTCAGTCTTCAAGTGGATTGTCATCATTTGATTCCATGGAGCAGGAACAAGCTTACTTGAAGTATGTCACCGAAATGCTAGAACTGTGTCATCCAAATGTGGTTTTAGTGGAAAAAACTGTGTCTCGGGATATTCAAGAGTCTATTCTCGCAAAAAGAATGACACTGGTCTATGACATGAAGCTTCATCGTCTACAGAGAATTGCTCTTTGTACTGGATCACCAATTTTATCATCAGATACAATGACGAGTCAAAAGCTAAAGCAGTGCGACTCTTTTCACATTGAAAAATTTATAGAGGAACATGCTGGTTTGGGTGGAGGAAAGTTGCCAAGTAAAACATTGATGTTCATTGAGGGCTGTCCTACACGCCAGGGTTGTACAATTTTGCTGAAAGGAGCACAGAGTGATGAATTGAAGAAGATCAAGTGTGTAGTGCAGTGTGCAGTTATCTTGGCATATCATTTAATACTTGAAACTTCTTTCCTTGTTGACCAGAGAGCAATGTTCTTTGCGCATCCTTTGTTTGGTGGAGCAAATCACTTGTCCATGGAAGTAGCAAACCAGTTTTCCACTGGTAACAAATCCTTTAATTTAGCATCCAGTAATTCATGCATTCCACATCATAGGGAGTCTAGTGGTGAAACTGAGTCGGATGCAGTTGATATTCTCATTTCTGATGGATTCCATGAAGGATCTTCCCAAAATGCTGACTTGGAATTTCAAGGCAGTTCCACATTATATGAACCATACAATCCTGTCAAATTTTCTGGCTTCTCGTCACTTTCAGCTTCACTAAAGAAAGTTATAGGGGAAAGCTTGCCTCTAGCATCTACTTCTTATCAATCTCTCTCTTCATACTTTGGATTAAATGGAAGAGAACTGAATGGTCAGATTACAAAGTGTGTTTCTATTTCAACATCTCCAGAGGCGACTGATCAGTGTGATGTTGAAGATAGAGGAAGTTCTGATGAAGAGAGGCCACTTAGTGGTGGAGAAATCCACTCTCCATTTACTTGCACTGAAGCTTCTCTGGAGATTGAAAAGGATGGTGGCAACAATGAAGACCCAATGCAGAGCAAGAATGACATCAGCAAAGTGTTGGATTCCCAGAGTATTTTGGTTTTGATGTCGAGCAAGAATGTTAAAGGGAATGTTTGTGAGCAAAGCCATTTTTCTCATATTATGTTCTACAAGAATTTTGATGTGCCCATCGGAAAGTTTCTGCAGGATAATATACTGAATCAGCGAAGCCATTGCACAGCATGTGGTGAGCTGCCAGAAGCTCACGTATACTGCTATGCACATCATAATAAGCAGCTTACCATACGTGTTAAACGGCTTCTTACAGAGCATTTGCCTGGTGAAGCAGAAGGCAAGCTTTGGATGTGGAGTCGATGTGGTAAATGTAAATCTGTGAAGGGAAAATCAAAGTGTACAAAAAGAGTCTTGATTTCCAGTGCTGCACGTTGTCTGTCATTTGGAAATTTCCTGGAGCTCAGTTTCTCAAACCACTCTCTGTCTAATATATTTTCTAGCTGCGGCCATTCTTTGCAAACAGACTTTCTCTACTTCTTTGGATTAGGCCCCATGGTTGCTATGTTCAAAAACTCCCCGGTCACAATTTATACTGTGTTTGTGCCTCCTCTAAAACTTCCATTCAGCAATTCAATTAGGCAAGAGTGGTTTGCAAAAGAAATTGAGAATGTATTAGCGAAAGGACGTATGCTGTTAAGTGAGGTTGGCAATTCTTTGAAGAAGATTAGGTCTCAGTTTGATGGCATGACTTTGAAACTGCAAGGCTCCTTGAAAAAATTCTCTGACATCGAAGATATGCTAAGTCAAGAAGAATCTGAGCAAGAGGTGAACATCCGTTATGCTGTTAACGAGAATAGGAACTCAGACCAAGCCGCTTACAAACTTCTTGGCTTTAACCGTCTACATTGGGAACTTCTTCTTCAATCATGCGTTTGGGATCAGCGCTTGCACTCGTTACTGTCACCAGCTCCTATGATGATCCATTCCATAGCTTCTGATAAGGTAAGCCAAGAAGTGAATTCAGGTATTCATGGCACTGCTGAAAGTATTATGGGAAGAGGTGAAAACTGCATTGATGGTTCTTCCAATTTAAAAGTTGAGTTAAATATAGCTGCAGAAGCAGATGAATTTCCAATTAAAGAAATTCCAATTGGTGGTCCTGTTGAAGAATCTGAAGGAGCTGATCAACATAACGTGTCTACTTTGCCTGAGGGTCTTAAGACACCAAATGTGGGTGGTGCAAGCCCAAAAAGATTTGCTGACCACAAGTCCAATCCTAGGCCCAATGGCTTCACTGATGGTCATTCTGACAAGTATGTTGAAGGGAATATTACTTTCGTTGATGAACTAGATGAAGATAGAGGAATTCCTGTTTCCAGGGAAAATGAGGATCCTTGTTCAGTTGTTGATTCAAATCTATCACTGATGGGCGCTTCTCCGCACTCACGATCATCCAAGTTTGACAGTTCAAGTGATTGGTTTTGGGCGCCCTTCTCTGAAATTCGACAAGTAGGTATGAAGGATCTACAAAGAGTCCTTCCAAGGTTTGGACCCATGAGTAGCTATACATCAGAATACTTACCCACAGCATATCAGTTGATCACAGAGGAAGGGCAAATGTTGCACATTCCTCTAGGAACTGATAATTATATAGTGTCGGACTATGATGGTGAACTTTCAAGTGTGATTGCTTGTGCACTGGCCTTTTTGAAAGATCCACATCTTCAAACAGATGTTCTTGTTGATGACGAGTGTGGAATTGCTGCTAGAACATTTGAGAGTTTACAGAGTCTGGCTCGGGTTCCTTCGCCGCATCAAAGCTCAAATGGTTCTTCAGATTCTGATTCTGTCCATTCTATGGCAAGCATTTCTTTTGATGAGTCACGCTTCTCCAGTTTTGACGGATTGAACTTGTTGGATTCTCTGGTTCCGGCAGGAACCCACCCAATGGTAACTCTAAGAGTTGCCAAGTCACTTGGCAAGGAGAAATATACTGTATTATGTCCATATGCCAATCAGTTTCGAGACCTCCGGAATCGTTGCTGCCAATCTGAGGTTGATTATATTGCTTCCCTATGCCGTTGTAGAAACTGGGATGCTAAAGGTGGGAAGAGCAAAGCCTTTTTTGCCAAAACAGTTGACGACAGGTTGATTATAAAAGAAATCAAGAAGACAGAATTTGAGTCATTTGTAAAGTTTGCAGATGCTTATTTTGAGCACGTGAACAAGTCATTTGAGAAGGGAAATCAAACTTGCCTTGCAAAAATTCTTGGGATTTATCAGGTTGGTAGATTTTTGGTTTCCATCATTGAACCTGTTTCTTCATACTCAACAACTTTTTCTTTGCAGGTGGTTGTGAGACAGACAAAAAGTGGGAAAGAGATGAAACATGATCTGATGGTTATGGAGAACCTTACCTTCGGTCGGAACTGCACCCGCCTGTACGATCTTAAAGGTGCTCTACATGACCGTTTCAATTTGGCGCCTGCTGGTGCGGGAGATGTTCTTCTGGATCAGAACTTTGTCAATGACATGAACTCATCTCCATTTTATGTCAGTAACCAAGAAAAGCAAAAATTGCAACGGGCTCTGTGGAATGACACGTCTTTTCTCAATTCAATCAATGTTATGGATTATTCATTGCTTGTCGGGATTGATACACACAGACAGGAGCTTGTATGTGGCATTATTGATTATCTGAGGCAGTATACATGGGACAAGCACCTAGAGTCATGGGTGAAGTCTTCACTTGTGCCAAAGAATGTCTTGCCGACTGTTATCTCTCCTAAAGAGTACAAGAGGAGATTCAGAAAGTTCATGTCGAAGAATATATGCAGTGTCCCAGATCACTGGTGCTCCTCTGAATCCTCTGATCCTTGCGATGAATATGCTGCTAGAAATGCTGATTCTCCCAAACAAAATCCGAAAGGAAAGGGGAGTTAA

Protein Analysis

1619

Amino Acids

179.64

Weight (kDa)

5.61

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 210 - 450 3e-20 TCP-1/cpn60 chaperonin family
PIP5K PF01504 1339 - 1527 1.4e-30 Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K PF01504 1528 - 1580 1.1e-08 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4070
AarI CACCTGC 1 cut(s) 4252
AasI GACNNNNNNGTC 1 cut(s) 187
Acc16I TGCGCA 1 cut(s) 1392
Acc36I ACCTGC 1 cut(s) 4252
AccB1I GGYRCC 2 cut(s) 3400, 4396
AccB7I CCANNNNNTGG 5 cut(s) 1865, 3068, 3461, 3772, 3862
AccI GTMKAC 5 cut(s) 1069, 2169, 2815, 3113, 4622
AccIII TCCGGA 2 cut(s) 394, 3945
AciI CCGC 6 cut(s) 2418, 2787, 3353, 3725, 4351, 4409
AcoI YGGCCR 1 cut(s) 2419
AcuI CTGAAG 4 cut(s) 327, 1920, 3108, 3732
AcvI CACGTG 1 cut(s) 4135
AcyI GRCGYC 2 cut(s) 3401, 4397
AdeI CACNNNGTG 2 cut(s) 1283, 1865
AfaI GTAC 7 cut(s) 256, 839, 1090, 1258, 2314, 4358, 4709
AfeI AGCGCT 1 cut(s) 2858
AflII CTTAAG 1 cut(s) 3131
AflIII ACRYGT 3 cut(s) 2206, 3108, 4515
AhdI GACNNNNNGTC 1 cut(s) 3181
AjiI CACGTC 1 cut(s) 4518
AjnI CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
AjuI GAANNNNNNNTTGG 2 cut(s) 3048, 3080
Alw21I GWGCWC 6 cut(s) 1279, 2376, 3613, 4134, 4375, 4772
Alw26I GTCTC 4 cut(s) 1005, 2649, 3933, 4267
Alw44I GTGCAC 1 cut(s) 3609
AlwNI CAGNNNCTG 2 cut(s) 3706, 3755
Ama87I CYCGRG 2 cut(s) 1002, 3711
Aor13HI TCCGGA 2 cut(s) 394, 3945
Aor51HI AGCGCT 1 cut(s) 2858
AoxI GGCC 7 cut(s) 144, 161, 1856, 2419, 2461, 3194, 3615
ApaLI GTGCAC 1 cut(s) 3609
ArsI GACNNNNNNTTYG 2 cut(s) 1406, 1438
AseI ATTAAT 1 cut(s) 561
Asp700I GAANNNNTTC 2 cut(s) 2690, 2829
AspA2I CCTAGG 1 cut(s) 3191
AspLEI GCGC 5 cut(s) 1393, 2859, 3347, 3403, 4399
AspS9I GGNCC 4 cut(s) 2462, 3071, 3195, 3464
AsuC2I CCSGG 1 cut(s) 2492
AvaI CYCGRG 2 cut(s) 1002, 3711
AvaII GGWCC 2 cut(s) 3071, 3464
AvrII CCTAGG 1 cut(s) 3191
AxyI CCTNAGG 1 cut(s) 3123
BaeGI GKGCMC 2 cut(s) 2088, 3613
BamHI GGATCC 2 cut(s) 373, 3304
BanI GGYRCC 2 cut(s) 3400, 4396
BanII GRGCYC 2 cut(s) 2376, 4504
BbrPI CACGTG 1 cut(s) 4135
BbsI GAAGAC 5 cut(s) 790, 876, 1947, 4091, 4650
Bbv12I GWGCWC 6 cut(s) 1279, 2376, 3613, 4134, 4375, 4772
BceAI ACGGC 3 cut(s) 273, 2231, 3978
BcgI CGANNNNNNTGC 4 cut(s) 2115, 2149, 4784, 4818
BciT130I CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
BclI TGATCA 3 cut(s) 1813, 3097, 3513
BcnI CCSGG 1 cut(s) 2492
BcoDI GTCTC 4 cut(s) 1005, 2649, 3933, 4267
BfmI CTRYAG 4 cut(s) 217, 1070, 2102, 3027
BfoI RGCGCY 4 cut(s) 2860, 3348, 3404, 4400
BfrI CTTAAG 1 cut(s) 3131
BfuAI ACCTGC 1 cut(s) 4252
BlnI CCTAGG 1 cut(s) 3191
Bme1390I CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
Bme18I GGWCC 2 cut(s) 3071, 3464
BmeRI GACNNNNNGTC 1 cut(s) 3181
BmeT110I CYCGRG 2 cut(s) 1002, 3711
BmgBI CACGTC 1 cut(s) 4518
BmgT120I GGNCC 4 cut(s) 2462, 3071, 3195, 3464
BmrFI CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
BmrI ACTGGG 1 cut(s) 4015
BmsI GCATC 8 cut(s) 688, 1402, 1484, 1522, 1715, 3736, 4000, 4108
BmuI ACTGGG 1 cut(s) 4015
BoxI GACNNNNGTC 1 cut(s) 1043
BpiI GAAGAC 5 cut(s) 790, 876, 1947, 4091, 4650
BplI GAGNNNNNCTC 4 cut(s) 1066, 1098, 3694, 3726
BpmI CTGGAG 4 cut(s) 1785, 1931, 2390, 3790
BpuMI CCSGG 1 cut(s) 2492
BsaAI YACGTR 3 cut(s) 2167, 2207, 4135
BsaBI GATNNNNATC 3 cut(s) 898, 3327, 3633
BsaHI GRCGYC 2 cut(s) 3401, 4397
BsaI GGTCTC 2 cut(s) 2649, 3933
BsaWI WCCGGW 2 cut(s) 394, 3945
BsaXI ACNNNNNCTCC 4 cut(s) 2260, 2290, 4754, 4784
Bse21I CCTNAGG 1 cut(s) 3123
Bse3DI GCAATG 6 cut(s) 552, 723, 750, 1386, 2131, 4553
Bse8I GATNNNNATC 3 cut(s) 898, 3327, 3633
BseAI TCCGGA 2 cut(s) 394, 3945
BseBI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
BseJI GATNNNNATC 3 cut(s) 898, 3327, 3633
BseMI GCAATG 6 cut(s) 552, 723, 750, 1386, 2131, 4553
BseMII CTCAG 9 cut(s) 318, 1515, 2389, 2660, 2721, 2790, 3114, 3957, 4604
BseRI GAGGAG 3 cut(s) 2511, 4729, 4762
BseSI GKGCMC 2 cut(s) 2088, 3613
BsgI GTGCAG 7 cut(s) 48, 132, 798, 1334, 1341, 2325, 4330
Bsh1285I CGRYCG 1 cut(s) 4339
BshFI GGCC 7 cut(s) 146, 163, 1858, 2421, 2463, 3196, 3617
BshNI GGYRCC 2 cut(s) 3400, 4396
BsiEI CGRYCG 1 cut(s) 4339
BsiHKAI GWGCWC 6 cut(s) 1279, 2376, 3613, 4134, 4375, 4772
BsiHKCI CYCGRG 2 cut(s) 1002, 3711
BsiSI CCGG 4 cut(s) 395, 2492, 3845, 3946
BsiWI CGTACG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 4643, 4739
BsmAI GTCTC 4 cut(s) 1005, 2649, 3933, 4267
BsmFI GGGAC 2 cut(s) 4643, 4739
BsmI GAATGC 1 cut(s) 1491
BsnI GGCC 7 cut(s) 146, 163, 1858, 2421, 2463, 3196, 3617
Bso31I GGTCTC 2 cut(s) 2649, 3933
BsoBI CYCGRG 2 cut(s) 1002, 3711
Bsp1286I GDGCHC 8 cut(s) 1279, 2088, 2376, 3613, 4134, 4375, 4504, 4772
Bsp13I TCCGGA 2 cut(s) 394, 3945
Bsp1407I TGTACA 2 cut(s) 1256, 2312
Bsp19I CCATGG 3 cut(s) 912, 1425, 2466
BspACI CCGC 6 cut(s) 2418, 2787, 3353, 3725, 4351, 4409
BspANI GGCC 7 cut(s) 146, 163, 1858, 2421, 2463, 3196, 3617
BspCNI CTCAG 9 cut(s) 319, 1516, 2388, 2659, 2722, 2789, 3115, 3958, 4605
BspEI TCCGGA 2 cut(s) 394, 3945
BspMAI CTGCAG 3 cut(s) 221, 2106, 3031
BspMI ACCTGC 1 cut(s) 4252
BspQI GCTCTTC 1 cut(s) 4019
BspT107I GGYRCC 2 cut(s) 3400, 4396
BspTI CTTAAG 1 cut(s) 3131
BspTNI GGTCTC 2 cut(s) 2649, 3933
BsrDI GCAATG 6 cut(s) 552, 723, 750, 1386, 2131, 4553
BsrGI TGTACA 2 cut(s) 1256, 2312
BssNAI GTATAC 2 cut(s) 2170, 4623
BssNI GRCGYC 2 cut(s) 3401, 4397
BssT1I CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3455
Bst1107I GTATAC 2 cut(s) 2170, 4623
Bst2UI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
Bst6I CTCTTC 5 cut(s) 1735, 1747, 1845, 2965, 4019
BstACI GRCGYC 2 cut(s) 3401, 4397
BstAFI CTTAAG 1 cut(s) 3131
BstAPI GCANNNNNTGC 2 cut(s) 3535, 4492
BstAUI TGTACA 2 cut(s) 1256, 2312
BstBAI YACGTR 3 cut(s) 2167, 2207, 4135
BstDSI CCRYGG 3 cut(s) 912, 1425, 2466
BstH2I RGCGCY 4 cut(s) 2860, 3348, 3404, 4400
BstHHI GCGC 5 cut(s) 1393, 2859, 3347, 3403, 4399
BstMAI GTCTC 4 cut(s) 1005, 2649, 3933, 4267
BstMCI CGRYCG 1 cut(s) 4339
BstMWI GCNNNNNNNGC 7 cut(s) 104, 551, 3032, 3535, 4040, 4492, 4814
BstNI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
BstNSI RCATGY 4 cut(s) 13, 812, 1184, 2145
BstPAI GACNNNNGTC 1 cut(s) 1043
BstSCI CCNGG 6 cut(s) 864, 1248, 2236, 2367, 2490, 3290
BstSFI CTRYAG 4 cut(s) 217, 1070, 2102, 3027
BstSLI GKGCMC 2 cut(s) 2088, 3613
BstV2I GAAGAC 5 cut(s) 790, 876, 1947, 4091, 4650
BstX2I RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3436, 3628
BstXI CCANNNNNNTGG 1 cut(s) 4764
BstYI RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3436, 3628
BstZ17I GTATAC 2 cut(s) 2170, 4623
Bsu36I CCTNAGG 1 cut(s) 3123
BsuRI GGCC 7 cut(s) 146, 163, 1858, 2421, 2463, 3196, 3617
BtgI CCRYGG 3 cut(s) 912, 1425, 2466
BtgZI GCGATG 1 cut(s) 4809
BtrI CACGTC 1 cut(s) 4518
BtsI GCAGTG 5 cut(s) 226, 1148, 1322, 2949, 4756
BveI ACCTGC 1 cut(s) 4252
CaiI CAGNNNCTG 2 cut(s) 3706, 3755
CfoI GCGC 5 cut(s) 1393, 2859, 3347, 3403, 4399
Cfr13I GGNCC 4 cut(s) 2462, 3071, 3195, 3464
Csp6I GTAC 7 cut(s) 255, 838, 1089, 1257, 2313, 4357, 4708
CviQI GTAC 7 cut(s) 255, 838, 1089, 1257, 2313, 4357, 4708
DinI GGCGCC 2 cut(s) 3402, 4398
DraI TTTAAA 2 cut(s) 526, 3006
DraIII CACNNNGTG 2 cut(s) 1283, 1865
DrdI GACNNNNNNGTC 1 cut(s) 187
DriI GACNNNNNGTC 1 cut(s) 3181
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 2419
Eam1104I CTCTTC 5 cut(s) 1735, 1747, 1845, 2965, 4019
Eam1105I GACNNNNNGTC 1 cut(s) 3181
EarI CTCTTC 5 cut(s) 1735, 1747, 1845, 2965, 4019
Ecl136II GAGCTC 1 cut(s) 2374
Eco130I CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3455
Eco24I GRGCYC 2 cut(s) 2376, 4504
Eco31I GGTCTC 2 cut(s) 2649, 3933
Eco47I GGWCC 2 cut(s) 3071, 3464
Eco47III AGCGCT 1 cut(s) 2858
Eco53kI GAGCTC 1 cut(s) 2374
Eco57I CTGAAG 4 cut(s) 327, 1920, 3108, 3732
Eco72I CACGTG 1 cut(s) 4135
Eco81I CCTNAGG 1 cut(s) 3123
Eco88I CYCGRG 2 cut(s) 1002, 3711
EcoICRI GAGCTC 1 cut(s) 2374
EcoO109I RGGNCCY 1 cut(s) 2462
EcoRI GAATTC 3 cut(s) 331, 2932, 3279
EcoRII CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
EcoT14I CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3455
EcoT22I ATGCAT 2 cut(s) 752, 1493
EcoT38I GRGCYC 2 cut(s) 2376, 4504
EgeI GGCGCC 2 cut(s) 3402, 4398
EheI GGCGCC 2 cut(s) 3402, 4398
ErhI CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3455
FalI AAGNNNNNCTT 6 cut(s) 2241, 2273, 3769, 3801, 4664, 4696
FaqI GGGAC 2 cut(s) 4643, 4739
FauI CCCGC 2 cut(s) 4358, 4402
FauNDI CATATG 3 cut(s) 247, 825, 3922
FbaI TGATCA 3 cut(s) 1813, 3097, 3513
FblI GTMKAC 5 cut(s) 1069, 2169, 2815, 3113, 4622
FriOI GRGCYC 2 cut(s) 2376, 4504
FspI TGCGCA 1 cut(s) 1392
GlaI GCGC 5 cut(s) 1392, 2858, 3346, 3402, 4398
GsuI CTGGAG 4 cut(s) 1785, 1931, 2390, 3790
HaeII RGCGCY 4 cut(s) 2860, 3348, 3404, 4400
HaeIII GGCC 7 cut(s) 146, 163, 1858, 2421, 2463, 3196, 3617
HapII CCGG 4 cut(s) 395, 2492, 3845, 3946
HhaI GCGC 5 cut(s) 1393, 2859, 3347, 3403, 4399
Hin1I GRCGYC 2 cut(s) 3401, 4397
Hin6I GCGC 5 cut(s) 1391, 2857, 3345, 3401, 4397
HinP1I GCGC 5 cut(s) 1391, 2857, 3345, 3401, 4397
HincII GTYRAC 5 cut(s) 241, 590, 1369, 2761, 4054
HindII GTYRAC 5 cut(s) 241, 590, 1369, 2761, 4054
HindIII AAGCTT 5 cut(s) 927, 1058, 1693, 1902, 2255
HpaI GTTAAC 1 cut(s) 2761
HpaII CCGG 4 cut(s) 395, 2492, 3845, 3946
Hpy99I CGWCG 1 cut(s) 437
HpyCH4IV ACGT 7 cut(s) 2166, 2206, 2344, 2599, 3108, 4134, 4517
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 551, 3032, 3535, 4040, 4492, 4814
HpySE526I ACGT 7 cut(s) 2166, 2206, 2344, 2599, 3108, 4134, 4517
Hsp92I GRCGYC 2 cut(s) 3401, 4397
HspAI GCGC 5 cut(s) 1391, 2857, 3345, 3401, 4397
KasI GGCGCC 2 cut(s) 3400, 4396
Kpn2I TCCGGA 2 cut(s) 394, 3945
Ksp22I TGATCA 3 cut(s) 1813, 3097, 3513
KspAI GTTAAC 1 cut(s) 2761
LguI GCTCTTC 1 cut(s) 4019
LweI GCATC 8 cut(s) 688, 1402, 1484, 1522, 1715, 3736, 4000, 4108
MaeII ACGT 7 cut(s) 2166, 2206, 2344, 2599, 3108, 4134, 4517
MfeI CAATTG 1 cut(s) 3063
MflI RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3436, 3628
MhlI GDGCHC 8 cut(s) 1279, 2088, 2376, 3613, 4134, 4375, 4504, 4772
Mly113I GGCGCC 2 cut(s) 3401, 4397
MmeI TCCRAC 7 cut(s) 237, 595, 1509, 1959, 3552, 3810, 4319
Mph1103I ATGCAT 2 cut(s) 752, 1493
MroI TCCGGA 2 cut(s) 394, 3945
MroXI GAANNNNTTC 2 cut(s) 2690, 2829
MslI CAYNNNNRTG 2 cut(s) 950, 972
MspCI CTTAAG 1 cut(s) 3131
MspI CCGG 4 cut(s) 395, 2492, 3845, 3946
MspR9I CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
MunI CAATTG 1 cut(s) 3063
Mva1269I GAATGC 1 cut(s) 1491
MvaI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
MwoI GCNNNNNNNGC 7 cut(s) 104, 551, 3032, 3535, 4040, 4492, 4814
NarI GGCGCC 2 cut(s) 3401, 4397
NciI CCSGG 1 cut(s) 2492
NcoI CCATGG 3 cut(s) 912, 1425, 2466
NdeI CATATG 3 cut(s) 247, 825, 3922
NmuCI GTSAC 6 cut(s) 943, 1656, 2494, 2874, 3795, 3885
NsbI TGCGCA 1 cut(s) 1392
NsiI ATGCAT 2 cut(s) 752, 1493
NspI RCATGY 4 cut(s) 13, 812, 1184, 2145
PaeI GCATGC 1 cut(s) 812
PaqCI CACCTGC 1 cut(s) 4252
PciSI GCTCTTC 1 cut(s) 4019
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 1 cut(s) 1491
PdmI GAANNNNTTC 2 cut(s) 2690, 2829
Pfl23II CGTACG 1 cut(s) 254
PflMI CCANNNNNTGG 5 cut(s) 1865, 3068, 3461, 3772, 3862
PfoI TCCNGGA 1 cut(s) 2367
PluTI GGCGCC 2 cut(s) 3404, 4400
PmaCI CACGTG 1 cut(s) 4135
PmlI CACGTG 1 cut(s) 4135
Ppu21I YACGTR 3 cut(s) 2167, 2207, 4135
PshAI GACNNNNGTC 1 cut(s) 1043
PshBI ATTAAT 1 cut(s) 561
PsiI TTATAA 1 cut(s) 4070
Psp124BI GAGCTC 1 cut(s) 2376
Psp6I CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
PspCI CACGTG 1 cut(s) 4135
PspGI CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
PspLI CGTACG 1 cut(s) 254
PspPI GGNCC 4 cut(s) 2462, 3071, 3195, 3464
PstI CTGCAG 3 cut(s) 221, 2106, 3031
PstNI CAGNNNCTG 2 cut(s) 3706, 3755
PsuI RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3436, 3628
RsaI GTAC 7 cut(s) 256, 839, 1090, 1258, 2314, 4358, 4709
RsaNI GTAC 7 cut(s) 255, 838, 1089, 1257, 2313, 4357, 4708
RseI CAYNNNNRTG 2 cut(s) 950, 972
SacI GAGCTC 1 cut(s) 2376
SapI GCTCTTC 1 cut(s) 4019
Sau96I GGNCC 4 cut(s) 2462, 3071, 3195, 3464
ScrFI CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
SduI GDGCHC 8 cut(s) 1279, 2088, 2376, 3613, 4134, 4375, 4504, 4772
SfaNI GCATC 8 cut(s) 688, 1402, 1484, 1522, 1715, 3736, 4000, 4108
SfcI CTRYAG 4 cut(s) 217, 1070, 2102, 3027
SfoI GGCGCC 2 cut(s) 3402, 4398
SinI GGWCC 2 cut(s) 3071, 3464
SmiMI CAYNNNNRTG 2 cut(s) 950, 972
SmlI CTYRAG 1 cut(s) 3131
SmoI CTYRAG 1 cut(s) 3131
SphI GCATGC 1 cut(s) 812
SsiI CCGC 6 cut(s) 2418, 2787, 3353, 3725, 4351, 4409
SspDI GGCGCC 2 cut(s) 3400, 4396
SspI AATATT 1 cut(s) 3244
SstI GAGCTC 1 cut(s) 2376
StyD4I CCNGG 6 cut(s) 864, 1248, 2236, 2367, 2490, 3290
StyI CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3455
TaiI ACGT 7 cut(s) 2169, 2209, 2347, 2602, 3111, 4137, 4520
TaqI TCGA 6 cut(s) 2009, 2272, 2703, 3418, 3937, 4736
TaqII GACCGA 1 cut(s) 4325
TatI WGTACW 5 cut(s) 837, 1088, 1256, 2312, 4707
TauI GCSGC 3 cut(s) 2421, 2789, 3727
TseFI GTSAC 6 cut(s) 943, 1656, 2494, 2874, 3795, 3885
Tsp45I GTSAC 6 cut(s) 943, 1656, 2494, 2874, 3795, 3885
TspGWI ACGGA 2 cut(s) 2738, 3831
Van91I CCANNNNNTGG 5 cut(s) 1865, 3068, 3461, 3772, 3862
Vha464I CTTAAG 1 cut(s) 3131
VneI GTGCAC 1 cut(s) 3609
VpaK11BI GGWCC 2 cut(s) 3071, 3464
VspI ATTAAT 1 cut(s) 561
XceI RCATGY 4 cut(s) 13, 812, 1184, 2145
XcmI CCANNNNNNNNNTGG 2 cut(s) 872, 1448
XmaJI CCTAGG 1 cut(s) 3191
XmiI GTMKAC 5 cut(s) 1069, 2169, 2815, 3113, 4622
XmnI GAANNNNTTC 2 cut(s) 2690, 2829
Zsp2I ATGCAT 2 cut(s) 752, 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.