Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Forward (+)

3645965 .. 3647782

Gene Structure 1818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGAAAGGTACTTATTACCGTTCACAATCATTCGACTTGGAAGGTTCACATGACTGGTTTTGGGCACCGTTCTCCGAAATTCGTCAAGTTGGTGTGAGAGATCTACAGAGAGTGTTCTTTTCAAAGTTTGAAACAATTAGTAGCTATACTGCAGAGCATTTACCCACAGCATATCAGCTGATCACGGAAGAAGGGAAAATGCTGCACATTCCTCTTGGAACTGATAATCATATTGTGTCAGACTATGAAGGAGAACTGTCGAGTATGATTGCTTGTGCACTGGCCATATTGAAAGATCTACCTTTACAAACAGAGGTTCTTGCTGACGATAGCAAGGGAGAGAGTGGAGTTGCTGCGAGAACATTTGAGCATTTACACGGTCTGACTCGACTTCCCACTAATACTACCCTGCATTGGTCTTCAAATGGTTCATTAGATTTAGACTCTGTCCATAATATGGCAAGCATTTCTTCAGATGAGTCACGCTTCTCCAGTTTTGATGGGTTGAATTTGTTGGATTCTCTGGTTCCGCCTGGAACTGTCAACCCAGTAGTCCCTCTAGGAGTTTCAAAATCACTTGGCAAGGATAAATATACTGTAATATGTCCATATGCCAATCAATTTCGTGATCTAAAAAACCGCAGTCGATGCTTCCAATCTGAAGTTGATTATATTGCTTCCCTTAGCCGTTGCAGAAACTGGGATGCTAAAGGTGGGAAGAGCAAATCCTTTTTTGCCAAAACACTTGATGACAGGTTGATAATTAAAGAAATCAAGAAGACAGAATTTGAGTCGTTTATGAAGTTTTCTGATGAGTATTTCAAGCACGTAAAGCTTTCTTTTGACAATGGGAATCAAACATGCCTTGCGAAAGTTCTTGGGATTTATCAGGTGATTGTGAGACAGACAAAAAGTGGGAAAGAGATGAGGCATGATCTGATGGTCATGGAGAATCTTACCTTTGGTCGGAACATCACTCGCCAGTATGATCTGAAAGGTACTCTACATGGTCGATTCAATTCTGCTACTGATGGTTCGGGAGATGTTCTTTTGGATCAGAACTTCGTCAATGACATGAACTCATCTCCACTGTATGTTAGTAACAAAGCAAAGCGTATATTGCAGCGGGCTGTGTGGAATGACACAACTTTCCTCAATTCAATCAATGTCATGGATTATTCATTGCTTGTGGGAGTAGATACTGAACGCCGTGAGCTTGTATGTGGTATTATTGATTATCTTAGGCAGTATACATGGGACAAGCAACTAGAGACATGGGTGAAGTCTTCACTTGTGCCAAAAAATGTCTCGCCGACTGTCATCTCTCCAAAAGAGTACAAGAGGAGATTCAGAAAGTTCATGTCTAAGCATTTCTTGAGCGTCCCTGATGATTGGTGCTCACCAGAATCCTCTGACCCTCGTCACCAATGTGCTGTTGGAAATGATGATTCTTCTCATTCAAAATCCCATAGGAAAGGCGGATTAAACAGTTCGTCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

501

Amino Acids

56.69

Weight (kDa)

7.63

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	237 - 403	3.6e-35	Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K	PF01504	405 - 456	1.9e-10	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	1250
AciI	CCGC	4 cut(s)	530, 640, 1126, 1479
AclWI	GGATC	1 cut(s)	1062
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	78, 508, 785
AcuI	CTGAAG	2 cut(s)	456, 681
AfaI	GTAC	3 cut(s)	10, 1000, 1337
AfiI	CCNNNNNNNGG	3 cut(s)	414, 457, 966
AjnI	CCWGG	1 cut(s)	532
AleI	CACNNNNGTG	1 cut(s)	1428
AluBI	AGCT	4 cut(s)	144, 178, 835, 1216
AluI	AGCT	4 cut(s)	144, 178, 835, 1216
Alw21I	GWGCWC	2 cut(s)	280, 1400
Alw26I	GTCTC	3 cut(s)	895, 1265, 1312
Alw44I	GTGCAC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	1062
AlwNI	CAGNNNCTG	1 cut(s)	699
AoxI	GGCC	1 cut(s)	282
ApaLI	GTGCAC	1 cut(s)	276
ApeKI	GCWGC	3 cut(s)	202, 353, 1123
ApoI	RAATTY	3 cut(s)	78, 508, 785
AsuHPI	GGTGA	4 cut(s)	904, 1291, 1392, 1415
BaeGI	GKGCMC	2 cut(s)	67, 280
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	64
BbsI	GAAGAC	3 cut(s)	411, 785, 1278
Bbv12I	GWGCWC	2 cut(s)	280, 1400
BbvI	GCAGC	3 cut(s)	189, 340, 1135
BccI	CCATC	3 cut(s)	494, 934, 1025
BceAI	ACGGC	2 cut(s)	672, 1194
BciT130I	CCWGG	1 cut(s)	534
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	3 cut(s)	895, 1265, 1312
BfaI	CTAG	2 cut(s)	560, 1268
BfmI	CTRYAG	2 cut(s)	104, 150
BglII	AGATCT	2 cut(s)	100, 295
BisI	GCNGC	3 cut(s)	203, 354, 1124
BlsI	GCNGC	3 cut(s)	204, 355, 1125
Bme1390I	CCNGG	1 cut(s)	534
BmiI	GGNNCC	2 cut(s)	66, 528
BmrFI	CCNGG	1 cut(s)	534
BmrI	ACTGGG	2 cut(s)	542, 709
BmsI	GCATC	2 cut(s)	638, 694
BmuI	ACTGGG	2 cut(s)	542, 709
BoxI	GACNNNNGTC	1 cut(s)	1419
BpiI	GAAGAC	3 cut(s)	411, 785, 1278
BpmI	CTGGAG	1 cut(s)	475
Bpu10I	CCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	1396
BsaAI	YACGTR	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 457, 966
Bse1I	ACTGG	6 cut(s)	59, 285, 492, 548, 704, 982
Bse3DI	GCAATG	1 cut(s)	1181
BseBI	CCWGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	3 cut(s)	414, 457, 966
BseMI	GCAATG	1 cut(s)	1181
BseNI	ACTGG	6 cut(s)	59, 285, 492, 548, 704, 982
BseRI	GAGGAG	1 cut(s)	1357
BseSI	GKGCMC	2 cut(s)	67, 280
BseXI	GCAGC	3 cut(s)	189, 340, 1135
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	280, 1400
BslFI	GGGAC	3 cut(s)	539, 1271, 1367
BslI	CCNNNNNNNGG	3 cut(s)	414, 457, 966
BsmAI	GTCTC	3 cut(s)	895, 1265, 1312
BsmFI	GGGAC	3 cut(s)	539, 1271, 1367
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	67, 280, 1400
Bsp143I	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
BspACI	CCGC	4 cut(s)	530, 640, 1126, 1479
BspANI	GGCC	1 cut(s)	284
BspLI	GGNNCC	2 cut(s)	66, 528
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	1062
BspQI	GCTCTTC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	1181
BsrI	ACTGG	6 cut(s)	59, 285, 492, 548, 704, 982
BssMI	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
BssNAI	GTATAC	1 cut(s)	1251
Bst1107I	GTATAC	1 cut(s)	1251
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	9 cut(s)	20, 69, 258, 380, 541, 598, 1092, 1318, 1490
Bst6I	CTCTTC	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	829
BstC8I	GCNNGC	2 cut(s)	463, 1128
BstDEI	CTNAG	3 cut(s)	683, 1241, 1365
BstF5I	GGATG	1 cut(s)	709
BstKTI	GATC	7 cut(s)	103, 183, 298, 631, 937, 991, 1057
BstMAI	GTCTC	3 cut(s)	895, 1265, 1312
BstMBI	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	648, 832, 1120
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	1 cut(s)	864
BstPAI	GACNNNNGTC	1 cut(s)	1419
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	2 cut(s)	104, 150
BstSLI	GKGCMC	2 cut(s)	67, 280
BstV1I	GCAGC	3 cut(s)	189, 340, 1135
BstV2I	GAAGAC	3 cut(s)	411, 785, 1278
BstX2I	RGATCY	2 cut(s)	100, 295
BstYI	RGATCY	2 cut(s)	100, 295
BstZ17I	GTATAC	1 cut(s)	1251
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	278, 1088
Cac8I	GCNNGC	2 cut(s)	463, 1128
CaiI	CAGNNNCTG	1 cut(s)	699
CseI	GACGC	1 cut(s)	1369
Csp6I	GTAC	3 cut(s)	9, 999, 1336
CviJI	RGCY	8 cut(s)	144, 178, 284, 687, 835, 1130, 1216, 1499
CviKI_1	RGCY	8 cut(s)	144, 178, 284, 687, 835, 1130, 1216, 1499
CviQI	GTAC	3 cut(s)	9, 999, 1336
DdeI	CTNAG	3 cut(s)	683, 1241, 1365
DpnI	GATC	7 cut(s)	102, 182, 297, 630, 936, 990, 1056
DpnII	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
EciI	GGCGGA	2 cut(s)	519, 1494
Eco57I	CTGAAG	2 cut(s)	456, 681
EcoRII	CCWGG	1 cut(s)	532
FalI	AAGNNNNNCTT	4 cut(s)	454, 486, 1358, 1390
FaqI	GGGAC	3 cut(s)	539, 1271, 1367
FauI	CCCGC	1 cut(s)	1119
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	1250
Fnu4HI	GCNGC	3 cut(s)	203, 354, 1124
FokI	GGATG	1 cut(s)	716
Fsp4HI	GCNGC	3 cut(s)	203, 354, 1124
FspBI	CTAG	2 cut(s)	560, 1268
GluI	GCNGC	3 cut(s)	203, 354, 1124
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	1369
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	833
HphI	GGTGA	4 cut(s)	904, 1291, 1392, 1415
Hpy166II	GTNNAC	5 cut(s)	23, 47, 278, 544, 1251
Hpy188III	TCNNGA	4 cut(s)	626, 775, 1038, 1375
Hpy8I	GTNNAC	5 cut(s)	23, 47, 278, 544, 1251
HpyAV	CCTTC	3 cut(s)	35, 185, 242
HpyCH4III	ACNGT	9 cut(s)	20, 69, 258, 380, 541, 598, 1092, 1318, 1490
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	6 cut(s)	152, 205, 278, 412, 693, 1123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	648, 832, 1120
HpyF3I	CTNAG	3 cut(s)	683, 1241, 1365
HpySE526I	ACGT	1 cut(s)	828
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
LguI	GCTCTTC	1 cut(s)	713
Lsp1109I	GCAGC	3 cut(s)	189, 340, 1135
LweI	GCATC	2 cut(s)	638, 694
MaeI	CTAG	2 cut(s)	560, 1268
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	3 cut(s)	480, 1100, 1421
MalI	GATC	7 cut(s)	102, 182, 297, 630, 936, 990, 1056
MboI	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
MboII	GAAGA	7 cut(s)	200, 411, 462, 730, 790, 1278, 1443
MflI	RGATCY	2 cut(s)	100, 295
MhlI	GDGCHC	3 cut(s)	67, 280, 1400
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	8 cut(s)	78, 135, 508, 620, 762, 785, 1018, 1156
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	4 cut(s)	379, 437, 488, 800
MmeI	TCCRAC	3 cut(s)	495, 947, 1417
MnlI	CCTC	8 cut(s)	222, 307, 567, 921, 1163, 1335, 1420, 1428
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	2 cut(s)	765, 1484
MslI	CAYNNNNRTG	1 cut(s)	1428
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	178, 1126
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	3 cut(s)	648, 832, 1120
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
NlaIV	GGNNCC	2 cut(s)	66, 528
NmuCI	GTSAC	2 cut(s)	480, 1421
NspI	RCATGY	1 cut(s)	864
OliI	CACNNNNGTG	1 cut(s)	1428
PciSI	GCTCTTC	1 cut(s)	713
PfeI	GAWTC	7 cut(s)	518, 853, 952, 1014, 1347, 1406, 1448
PflFI	GACNNNGTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	204, 355, 1125
PleI	GAGTC	4 cut(s)	379, 437, 487, 799
PpsI	GAGTC	4 cut(s)	379, 437, 487, 799
Ppu21I	YACGTR	1 cut(s)	829
PshAI	GACNNNNGTC	1 cut(s)	1419
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	66, 528
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	699
PsuI	RGATCY	2 cut(s)	100, 295
PsyI	GACNNNGTC	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	10, 1000, 1337
RsaNI	GTAC	3 cut(s)	9, 999, 1336
RseI	CAYNNNNRTG	1 cut(s)	1428
SapI	GCTCTTC	1 cut(s)	713
SaqAI	TTAA	2 cut(s)	765, 1484
SatI	GCNGC	3 cut(s)	203, 354, 1124
Sau3AI	GATC	7 cut(s)	100, 180, 295, 628, 934, 988, 1054
SchI	GAGTC	4 cut(s)	379, 437, 488, 800
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	3 cut(s)	67, 280, 1400
SfaNI	GCATC	2 cut(s)	638, 694
SfcI	CTRYAG	2 cut(s)	104, 150
SmiMI	CAYNNNNRTG	1 cut(s)	1428
SmlI	CTYRAG	1 cut(s)	1375
SmoI	CTYRAG	1 cut(s)	1375
Sse9I	AATT	8 cut(s)	78, 135, 508, 620, 762, 785, 1018, 1156
SsiI	CCGC	4 cut(s)	530, 640, 1126, 1479
SspMI	CTAG	2 cut(s)	560, 1268
StyD4I	CCNGG	1 cut(s)	532
TaaI	ACNGT	9 cut(s)	20, 69, 258, 380, 541, 598, 1092, 1318, 1490
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	5 cut(s)	33, 260, 388, 646, 1012
TasI	AATT	8 cut(s)	78, 135, 508, 620, 762, 785, 1018, 1156
TatI	WGTACW	1 cut(s)	1335
TfiI	GAWTC	7 cut(s)	518, 853, 952, 1014, 1347, 1406, 1448
Tru1I	TTAA	2 cut(s)	765, 1484
Tru9I	TTAA	2 cut(s)	765, 1484
TscAI	CASTG	2 cut(s)	285, 1095
TseFI	GTSAC	2 cut(s)	480, 1421
TseI	GCWGC	3 cut(s)	202, 353, 1123
Tsp45I	GTSAC	2 cut(s)	480, 1421
TspDTI	ATGAA	7 cut(s)	17, 261, 420, 815, 1091, 1170, 1348
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	285, 1095
Tth111I	GACNNNGTC	1 cut(s)	446
Van91I	CCANNNNNTGG	1 cut(s)	457
VneI	GTGCAC	1 cut(s)	276
XapI	RAATTY	3 cut(s)	78, 508, 785
XceI	RCATGY	1 cut(s)	864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1433
XmiI	GTMKAC	1 cut(s)	1250
XspI	CTAG	2 cut(s)	560, 1268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.