Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Forward (+)

3438153 .. 3439804

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAAGAAGGGCAAATGCTGCACATTCCTCTTGGAACTGATAACCATGTTGTGTCAGACTATGAAGGAGAACTGTCTAGTATGATTGCTTGTGCACTAGCTTTATTGAAAGATCTACCTTTACAAACAGAGGTTCATGCTGACGATAGCAAGGGAGAGAGTGGAGTTGCTGCGAGAACATTTGAGAATTTGCACAGTCTGACTCGACTTCCCACTAATACTTCCCTGCATTGGTCTTCAAATGGTTCGTTACATTTAGATTCTGTCCATAATATGGCAAGCATTTTTTCAGATGAGTCACGCTTCTCCAGTTTTGATGGGTTGAATTTGTTGGATTCTCTGGTTCCGCCTGGAACTGTTAACCCAGTAGTCCCTCTAGGAGTTTCAAAATCATTTGGCAAGGATAAATATACTGTGATATGTCCATATGCCAATCAATTTCGTGATCTCCGCAATCGATGCTGCCAATCTGAAGTTGATTACATTGCTTCCCTTAGCCGTTGCAGAAACTGGGATGCTAAAGGTGGGAAGAGCAAATCCTTTTTTGCCAAAACACTTGATGACAGGTTAATTATTAAAGAAATCAAGAAGACAGAATTTGAGTCGTTTATGAAGTTTTCCAACGAGTATTTCAAGCACGTAAAGCTTTCATTTGACAATGGGAATCAAACATGCCTTGCAAAAGTTCTTGGGATTTATCAGGTGATTGTGAGACAGACAAAAAGTGGGAAAGAAATGAGGCATGATCTGATGGTCATGGAGAATCTTACCTTTGGTCGGAACATCACTCGCCAGTATGATCTTAAAGGTGCTCTACATGCTCGATTCAATTCTGCTAGTGGTGGTTTGGGAGATGTCCTTTTGGATCAGAACTTTGTCAATGACATGAAGTCATCTCCATTGTATGTTAGTAACAAAGCAAAGCGTATATTGCAGCGGGCTGTGTGGAATGACACAACTTTCCTCAATTCAATCAATGTTATGGATTATTCATTGCTTGTGGGAGTAGATACTGAACGTCAGGAGCTTGTATGTGGCATTATTGATTATCTTAGGCAGTATACATGGGACAAGCAACTAGAGACATGGGTGAAGTCTTCACTTGTGCCGAAAAATGTCTTGCCGACTGTCATCTCGCCAATAGAGTACAAGAGGAGATTCAGAAGGTTCATGTCTAAGCATTTCTTGAGCGTCCCTGATGATTGGTGCTCACCAGAATCCTCTGACCCCTGTCACCAATGTGATGTTGGAAATGATGATTCTTCTCATTCAAAATCCCAAGTGAAAGGCGGGTTCAACAGTTCTTCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

438

Amino Acids

49.25

Weight (kDa)

6.89

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	1061
AciI	CCGC	4 cut(s)	347, 451, 937, 1290
AclWI	GGATC	1 cut(s)	873
AcsI	RAATTY	3 cut(s)	187, 325, 596
AcuI	CTGAAG	2 cut(s)	492, 1290
AfaI	GTAC	1 cut(s)	1148
AfiI	CCNNNNNNNGG	3 cut(s)	231, 274, 777
AgsI	TTSAA	9 cut(s)	109, 240, 325, 387, 634, 829, 972, 1272, 1297
AhdI	GACNNNNNGTC	1 cut(s)	889
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AleI	CACNNNNGTG	1 cut(s)	1239
AluBI	AGCT	3 cut(s)	101, 646, 1027
AluI	AGCT	3 cut(s)	101, 646, 1027
Alw21I	GWGCWC	3 cut(s)	97, 814, 1211
Alw26I	GTCTC	2 cut(s)	706, 1076
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	873
AlwNI	CAGNNNCTG	1 cut(s)	510
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	4 cut(s)	19, 170, 462, 934
ApoI	RAATTY	3 cut(s)	187, 325, 596
AsuHPI	GGTGA	4 cut(s)	715, 1102, 1203, 1226
BaeGI	GKGCMC	1 cut(s)	97
BbsI	GAAGAC	3 cut(s)	228, 596, 1089
Bbv12I	GWGCWC	3 cut(s)	97, 814, 1211
BbvI	GCAGC	4 cut(s)	6, 157, 449, 946
BccI	CCATC	2 cut(s)	311, 745
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	706, 1076
BfaI	CTAG	5 cut(s)	78, 98, 377, 837, 1079
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	4 cut(s)	20, 171, 463, 935
BlsI	GCNGC	4 cut(s)	21, 172, 464, 936
Bme1390I	CCNGG	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	889
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	351
BmrI	ACTGGG	2 cut(s)	359, 520
BmsI	GCATC	2 cut(s)	449, 505
BmuI	ACTGGG	2 cut(s)	359, 520
BoxI	GACNNNNGTC	1 cut(s)	1230
BpiI	GAAGAC	3 cut(s)	228, 596, 1089
BpmI	CTGGAG	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	1207
Bsa29I	ATCGAT	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 274, 777
Bse1I	ACTGG	4 cut(s)	309, 365, 515, 793
Bse3DI	GCAATG	2 cut(s)	483, 992
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	457
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	231, 274, 777
BseMI	GCAATG	2 cut(s)	483, 992
BseNI	ACTGG	4 cut(s)	309, 365, 515, 793
BseRI	GAGGAG	1 cut(s)	1168
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	4 cut(s)	6, 157, 449, 946
BsgI	GTGCAG	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	457
BsiHKAI	GWGCWC	3 cut(s)	97, 814, 1211
BslFI	GGGAC	3 cut(s)	356, 1082, 1178
BslI	CCNNNNNNNGG	3 cut(s)	231, 274, 777
BsmAI	GTCTC	2 cut(s)	706, 1076
BsmFI	GGGAC	3 cut(s)	356, 1082, 1178
Bsp1286I	GDGCHC	3 cut(s)	97, 814, 1211
Bsp143I	GATC	5 cut(s)	112, 445, 745, 799, 865
BspACI	CCGC	4 cut(s)	347, 451, 937, 1290
BspDI	ATCGAT	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	873
BspQI	GCTCTTC	1 cut(s)	524
BsrDI	GCAATG	2 cut(s)	483, 992
BsrI	ACTGG	4 cut(s)	309, 365, 515, 793
BssMI	GATC	5 cut(s)	112, 445, 745, 799, 865
BssNAI	GTATAC	1 cut(s)	1062
Bst1107I	GTATAC	1 cut(s)	1062
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	6 cut(s)	75, 197, 358, 415, 1129, 1301
Bst6I	CTCTTC	1 cut(s)	524
BstAPI	GCANNNNNTGC	2 cut(s)	19, 459
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	280, 939
BstDEI	CTNAG	3 cut(s)	494, 1052, 1176
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	5 cut(s)	115, 448, 748, 802, 868
BstMAI	GTCTC	2 cut(s)	706, 1076
BstMBI	GATC	5 cut(s)	112, 445, 745, 799, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 459, 643, 818, 931
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	2 cut(s)	675, 821
BstPAI	GACNNNNGTC	1 cut(s)	1230
BstSCI	CCNGG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	4 cut(s)	6, 157, 449, 946
BstV2I	GAAGAC	3 cut(s)	228, 596, 1089
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BstZ17I	GTATAC	1 cut(s)	1062
Bsu15I	ATCGAT	1 cut(s)	457
BsuTUI	ATCGAT	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	280, 939
CaiI	CAGNNNCTG	1 cut(s)	510
ClaI	ATCGAT	1 cut(s)	457
CseI	GACGC	1 cut(s)	1180
Csp6I	GTAC	1 cut(s)	1147
CviJI	RGCY	6 cut(s)	101, 498, 646, 941, 1027, 1310
CviKI_1	RGCY	6 cut(s)	101, 498, 646, 941, 1027, 1310
CviQI	GTAC	1 cut(s)	1147
DdeI	CTNAG	3 cut(s)	494, 1052, 1176
DpnI	GATC	5 cut(s)	114, 447, 747, 801, 867
DpnII	GATC	5 cut(s)	112, 445, 745, 799, 865
DriI	GACNNNNNGTC	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	524
Eam1105I	GACNNNNNGTC	1 cut(s)	889
EarI	CTCTTC	1 cut(s)	524
EciI	GGCGGA	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	492, 1290
EcoRII	CCWGG	1 cut(s)	349
FalI	AAGNNNNNCTT	2 cut(s)	1169, 1201
FaqI	GGGAC	3 cut(s)	356, 1082, 1178
FauI	CCCGC	2 cut(s)	930, 1283
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	1061
Fnu4HI	GCNGC	4 cut(s)	20, 171, 463, 935
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	4 cut(s)	20, 171, 463, 935
FspBI	CTAG	5 cut(s)	78, 98, 377, 837, 1079
GluI	GCNGC	4 cut(s)	20, 171, 463, 935
GsuI	CTGGAG	1 cut(s)	292
HgaI	GACGC	1 cut(s)	1180
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	644
HpaI	GTTAAC	1 cut(s)	361
HphI	GGTGA	4 cut(s)	715, 1102, 1203, 1226
Hpy166II	GTNNAC	3 cut(s)	95, 361, 1062
Hpy188I	TCNGA	9 cut(s)	58, 201, 292, 472, 750, 780, 870, 1163, 1225
Hpy188III	TCNNGA	4 cut(s)	443, 586, 1022, 1186
Hpy8I	GTNNAC	3 cut(s)	95, 361, 1062
HpyAV	CCTTC	2 cut(s)	59, 1158
HpyCH4III	ACNGT	6 cut(s)	75, 197, 358, 415, 1129, 1301
HpyCH4IV	ACGT	2 cut(s)	639, 1018
HpyCH4V	TGCA	7 cut(s)	22, 95, 193, 229, 504, 680, 934
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 459, 643, 818, 931
HpyF3I	CTNAG	3 cut(s)	494, 1052, 1176
HpySE526I	ACGT	2 cut(s)	639, 1018
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	112, 445, 745, 799, 865
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	1 cut(s)	1024
Lsp1109I	GCAGC	4 cut(s)	6, 157, 449, 946
LweI	GCATC	2 cut(s)	449, 505
MaeI	CTAG	5 cut(s)	78, 98, 377, 837, 1079
MaeII	ACGT	2 cut(s)	639, 1018
MaeIII	GTNAC	4 cut(s)	249, 297, 911, 1232
MalI	GATC	5 cut(s)	114, 447, 747, 801, 867
MboI	GATC	5 cut(s)	112, 445, 745, 799, 865
MboII	GAAGA	7 cut(s)	17, 228, 541, 601, 1089, 1254, 1296
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	3 cut(s)	97, 814, 1211
MluCI	AATT	7 cut(s)	187, 325, 437, 570, 596, 829, 967
MlyI	GAGTC	3 cut(s)	196, 305, 611
MmeI	TCCRAC	4 cut(s)	312, 645, 758, 1228
MnlI	CCTC	7 cut(s)	39, 124, 384, 732, 974, 1146, 1231
MseI	TTAA	4 cut(s)	360, 569, 576, 804
MslI	CAYNNNNRTG	1 cut(s)	1239
MspA1I	CMGCKG	1 cut(s)	937
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	5 cut(s)	19, 459, 643, 818, 931
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	5 cut(s)	112, 445, 745, 799, 865
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	2 cut(s)	297, 1232
NspI	RCATGY	2 cut(s)	675, 821
OliI	CACNNNNGTG	1 cut(s)	1239
PciSI	GCTCTTC	1 cut(s)	524
PfeI	GAWTC	8 cut(s)	260, 335, 664, 763, 825, 1158, 1217, 1259
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	21, 172, 464, 936
PleI	GAGTC	3 cut(s)	196, 304, 610
PpsI	GAGTC	3 cut(s)	196, 304, 610
Ppu21I	YACGTR	1 cut(s)	640
PshAI	GACNNNNGTC	1 cut(s)	1230
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	1148
RsaNI	GTAC	1 cut(s)	1147
RseI	CAYNNNNRTG	1 cut(s)	1239
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	360, 569, 576, 804
SatI	GCNGC	4 cut(s)	20, 171, 463, 935
Sau3AI	GATC	5 cut(s)	112, 445, 745, 799, 865
SchI	GAGTC	3 cut(s)	196, 305, 611
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	3 cut(s)	97, 814, 1211
SfaNI	GCATC	2 cut(s)	449, 505
SmiMI	CAYNNNNRTG	1 cut(s)	1239
SmlI	CTYRAG	1 cut(s)	1186
SmoI	CTYRAG	1 cut(s)	1186
Sse9I	AATT	7 cut(s)	187, 325, 437, 570, 596, 829, 967
SsiI	CCGC	4 cut(s)	347, 451, 937, 1290
SspMI	CTAG	5 cut(s)	78, 98, 377, 837, 1079
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	6 cut(s)	75, 197, 358, 415, 1129, 1301
TaiI	ACGT	2 cut(s)	642, 1021
TaqI	TCGA	3 cut(s)	205, 457, 823
TasI	AATT	7 cut(s)	187, 325, 437, 570, 596, 829, 967
TatI	WGTACW	1 cut(s)	1146
TfiI	GAWTC	8 cut(s)	260, 335, 664, 763, 825, 1158, 1217, 1259
Tru1I	TTAA	4 cut(s)	360, 569, 576, 804
Tru9I	TTAA	4 cut(s)	360, 569, 576, 804
TseFI	GTSAC	2 cut(s)	297, 1232
TseI	GCWGC	4 cut(s)	19, 170, 462, 934
Tsp45I	GTSAC	2 cut(s)	297, 1232
TspDTI	ATGAA	7 cut(s)	78, 125, 626, 639, 902, 981, 1159
Van91I	CCANNNNNTGG	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	93
XapI	RAATTY	3 cut(s)	187, 325, 596
XceI	RCATGY	2 cut(s)	675, 821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1244
XmiI	GTMKAC	1 cut(s)	1061
XspI	CTAG	5 cut(s)	78, 98, 377, 837, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.