Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003080.1

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Forward (+)

30 .. 7505

Gene Structure 7476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4428 bp

atggctgactggatatgggatcctcctgaacctgatgatccggaggacgatgtggagggtagtgtggctttcaatgacgacgatgatgatgagtgtggtgatggcatgaaatggggcaaaccaagttctttgagtcgctctaaagatgaaggaagtgggagctataagtttaaagaggaaaaacaaagagctatggaagcagttattaatggaaagttcaaggctcttgtcagccaactacttacatctgttggtgttgttggatcttctggggaggatggtgaaagttgggtggacattattacttctttgtcatgggaagctgcttcatttttgaaacccgatgctgttgttggtaaagcaatggatatagatggctatgtgaaagtaaaatgcattgcaactggtgatcgctgccaaagtcaattagtaaaaggtatggtcttcaaaaagcatgctgcacacaagcatatgccaatcaagtacaagaacccaaggttgttgctaatccagggagttcttggtcagtcttcaagtggattgtcatcatttgattccatggagcaggaacaagattacttgaagtatgtcaccgaaatgctagaactgtgtcatccaaatgtggttttagtggaaaaaactgtgtctcgggatattcaagagtctattctcgcaaaaagaatgacactggtctatgacatgaagctccatcgtctacagagaattgctctttgtactggatcaccaattttatcatcagatacaatgacgagtcaaaagctaaagcagtgcgactcttttcacattgaaaaatttatagaggaacgtgctggtttgggtggaggaaagatgccaagtaaaacattgatgtttattgagggctgtcctacacgccagggttgtacaattttgctgaaaggagcacagagtgatgaattgaagaagatcaagtgtgtagtgcagtgtgcagttatcttggcatatcatttaatacttgagacttctttccttgttgaccagagagcaatgttctttgcgcatcctttgtttggtggagcaaatcacttgtccaaggaagtagcaaaccagttttccactggtaacaaatcctttgatttagcatccagtaattcatgcattccacatcatagggagtctagtggtgaaaccgagtcggatgcagttgatattcttatttctgatggattccatgaaggatctgcccaaaatgctgacttggaattacaaggcagttccacattatatgaaccatacaatcctgtcatattttctggcttctcgtcactttcagcttcactaaagaaagttataggggaaagcctgcctctagcatctacttcttatcaatctctctcttcatactttggattaaatggaagagaactgaatggtcagattacaaagtctgtttctatttcaacatctccagaggcgactgatcagtgtgatgttgaagatagaggaagttctgatgaagagaggccacttagtggtggagaaatccagtctccatttacttgcactgaagcttctctggagattgaaaaggatggtggcaacaatgaagacccaatgcaaagcaagaacgacatcagcaaagtgttggattcccagagtattttggttttgatgtcgagcaagaatgttaaagggaatgtttgtgagcaaagccatttttctcatatcatgttctacaagaattttgatgtgcccattggaaagtttctacaggataatatactgaatcagagaagccattgcacagcatgtggtgagctgccagaagctcacgtatactgttatgcacatcataaaaagcagcttaccatacgcgttaaacggcttcttacagagcatttgcctggtgaagcagaaggcaagctttggatgtggagtcgatgcggtaaatgtaaatctgtgaagggaaaatcaaagtgtacaaaaagagtcttgatttccagtgctgcacgttgtctgtcatttggaaatttcctggagctcagtttctcaaatcactctctgtctaatatattttctagctgcggccattctttgcaaatggactttctctacttctttggattaggccccatggttgctatgttcaaaaactccccagtcacaatttatactgtgtctatgcctcctctaaaacttccattcagcaattcaattaggcaagagtggtttgcaaaagaaattgagaatgtattagcgaaaggacgtatgctgttaagtgaggttggcaattctttgaagaagattaggtctcagtttgatggcatgactttgaaactgcaaggctccttgaaaaaattctctgacatcgaagatatgctaagtcaagaagaatctgagcgagaggtgaacatccgtaatgctgttaacgagaataggaactcagaccaagccgcttacaaacttcttggctttaaccgtctacattgggaacttcttcttcaatcatgcgtttgggatcagcgcttgcactcgttactgtcaccaactcctaggatgatccactccatagcttctgataaggtaagccaagaagtgaattcaggtattcatggcactgctgacagtattatgggaaaaggtgaaaactacattgatggttcttccaatttaaaagttgagttaaatgaagcagatgaatttccaattaaagaaattccaattggtggtcctgttgaagaatctgaaggtgctgatcaacataacgtgtctactttgcccgagggtcttaagacaccaaatgtgggtggtgcaagcccaaaaagatttgctgaccacaagtccaatcctaggcccaatggctccactggtggtcattctgacaagtatgttgaagggaatattactttcgctgatgaactagatgaagatagaggaattcctgtttccagggaaaatgaggatccttgttcagttgttgattcaaatctatcactgatgggcgcttctccgcactcacgatcatccaagtttgacagttcaagtgattggttttgggcgcccttctctgaaattcgacaagtaggtatgaaggatctacaaagagtccttccaaggtttggacccatgagtagctatacatcagaatacttacccacagcgtatcagttgatcacagaggaagggcaaatgttgcacgttcctctaggaactgataattatatagtgtcggactatgatggtgaactttcaagtgtgattgcttgtgcactggcctttttgaaagatccacatcttcaaacagatgttcttgtcgatgacgagtctggaattgctgctagaacatttgagagtttacagagtctggctcgggttccttcgctgcatcaaagctcaaatggttcttcagattctgattcagtccattctatggcaagcatttcttttgatgagtcacgcttctccagttttgacggattgaacttgttggattctctggttccggcaggaacccacccaatggtaactctaagagttgccaagtcacttggtaaggagaaatatactgtattatgtccatatgccaatcagtttcgagacctccggaatcgttgctgccaatctgaggttgattatattgcttccctaagccgttgtagaaactgggatgctaaaggtgggaagagcaaagccttttttgccaaaacagttgatgacaggttgattataaaagaaattaagaagacagaatttgagtcatttgtaaagtttgcagatgcttattttgagcatgtgaacaagtcatttgagaagggaaatcaaacttgccttgcaaaaattcttgggatttatcaggtggttgtgagacagacaaaaagtgggaaagagatgaaacatgatctgatggttatggagaaccttaccttcggtcggaactgcacccgcctgtacgatcttaaaggtgctctacatgaccgtttcaatttggcgcctgctggtgcgggagatgttcttctggatcagaactttgtcaatgacatgaactcatctccattttatgtcagtaaccaagaaaagcaaaaattgcaacgggctctgtggaatgacacgtcttttctcaattcaatcaatgttatggattattcattgcttgttgggattgatacacacagacaggagcttgtatgtggcattattgattatctgaggcagtatacatgggacaagcacctagagtcatgggtgaagtcttcacttgtgccaaagaatgtcctgccgactgttatctctcctaaagagtacaagaggagattcagaaagttcatgtcgaagaatatatgcagtgtcccagatcactggtgctcctcagaatcctttgatccttgtgatgaatatgctgctagaaatgctgattctcccaaacaaaatccgaaaggaaaggggggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

1475

Amino Acids

163.97

Weight (kDa)

5.8

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3707
Acc16I	TGCGCA	1 cut(s)	1038
AccB1I	GGYRCC	2 cut(s)	3037, 3967
AccB7I	CCANNNNNTGG	5 cut(s)	1511, 2705, 3098, 3409, 3499
AccI	GTMKAC	5 cut(s)	715, 1815, 2461, 2750, 4193
AccII	CGCG	1 cut(s)	1854
AccIII	TCCGGA	2 cut(s)	40, 3582
AciI	CCGC	6 cut(s)	1923, 2064, 2433, 2990, 3922, 3980
AcoI	YGGCCR	1 cut(s)	2065
AcuI	CTGAAG	3 cut(s)	1566, 2745, 3369
AcyI	GRCGYC	2 cut(s)	3038, 3968
AdeI	CACNNNGTG	2 cut(s)	929, 1511
AfaI	GTAC	6 cut(s)	485, 736, 904, 1960, 3929, 4280
AfeI	AGCGCT	1 cut(s)	2504
AflII	CTTAAG	1 cut(s)	2768
AflIII	ACRYGT	3 cut(s)	1852, 2745, 4086
AhdI	GACNNNNNGTC	1 cut(s)	2818
AjiI	CACGTC	1 cut(s)	4089
AjnI	CCWGG	5 cut(s)	510, 894, 1882, 2013, 2927
AjuI	GAANNNNNNNTTGG	2 cut(s)	2685, 2717
Alw21I	GWGCWC	5 cut(s)	925, 2022, 3250, 3946, 4343
Alw26I	GTCTC	6 cut(s)	651, 992, 1533, 2295, 3570, 3838
Alw44I	GTGCAC	1 cut(s)	3246
AlwNI	CAGNNNCTG	2 cut(s)	3343, 3392
Ama87I	CYCGRG	3 cut(s)	648, 2759, 3348
Aor13HI	TCCGGA	2 cut(s)	40, 3582
Aor51HI	AGCGCT	1 cut(s)	2504
AoxI	GGCC	5 cut(s)	1502, 2065, 2107, 2831, 3252
ApaLI	GTGCAC	1 cut(s)	3246
ArsI	GACNNNNNNTTYG	2 cut(s)	1052, 1084
AseI	ATTAAT	1 cut(s)	207
Asp700I	GAANNNNTTC	2 cut(s)	2336, 2475
AspA2I	CCTAGG	2 cut(s)	2531, 2828
AspLEI	GCGC	5 cut(s)	1039, 2505, 2984, 3040, 3970
AspS9I	GGNCC	4 cut(s)	2108, 2708, 2832, 3101
AvaI	CYCGRG	3 cut(s)	648, 2759, 3348
AvaII	GGWCC	2 cut(s)	2708, 3101
AvrII	CCTAGG	2 cut(s)	2531, 2828
BaeGI	GKGCMC	2 cut(s)	1734, 3250
BamHI	GGATCC	2 cut(s)	19, 2941
BanI	GGYRCC	2 cut(s)	3037, 3967
BanII	GRGCYC	2 cut(s)	2022, 4075
BbsI	GAAGAC	5 cut(s)	436, 522, 1593, 3728, 4221
Bbv12I	GWGCWC	5 cut(s)	925, 2022, 3250, 3946, 4343
BceAI	ACGGC	2 cut(s)	1877, 3615
BcgI	CGANNNNNNTGC	2 cut(s)	1160, 1194
BciT130I	CCWGG	5 cut(s)	512, 896, 1884, 2015, 2929
BclI	TGATCA	3 cut(s)	1459, 2734, 3150
BcoDI	GTCTC	6 cut(s)	651, 992, 1533, 2295, 3570, 3838
BfmI	CTRYAG	2 cut(s)	716, 1748
BfoI	RGCGCY	4 cut(s)	2506, 2985, 3041, 3971
BfrI	CTTAAG	1 cut(s)	2768
BlnI	CCTAGG	2 cut(s)	2531, 2828
Bme1390I	CCNGG	5 cut(s)	512, 896, 1884, 2015, 2929
Bme18I	GGWCC	2 cut(s)	2708, 3101
BmeRI	GACNNNNNGTC	1 cut(s)	2818
BmeT110I	CYCGRG	3 cut(s)	648, 2759, 3348
BmgBI	CACGTC	1 cut(s)	4089
BmgT120I	GGNCC	4 cut(s)	2108, 2708, 2832, 3101
BmrFI	CCNGG	5 cut(s)	512, 896, 1884, 2015, 2929
BmrI	ACTGGG	2 cut(s)	2132, 3652
BmuI	ACTGGG	2 cut(s)	2132, 3652
BoxI	GACNNNNGTC	1 cut(s)	689
BpiI	GAAGAC	5 cut(s)	436, 522, 1593, 3728, 4221
BplI	GAGNNNNNCTC	4 cut(s)	712, 744, 3331, 3363
BpmI	CTGGAG	4 cut(s)	1431, 1577, 2036, 3427
Bpu10I	CCTNAGC	1 cut(s)	3626
BpuEI	CTTGAG	1 cut(s)	1016
BsaAI	YACGTR	1 cut(s)	1813
BsaBI	GATNNNNATC	3 cut(s)	544, 2964, 3270
BsaHI	GRCGYC	2 cut(s)	3038, 3968
BsaI	GGTCTC	2 cut(s)	2295, 3570
BsaWI	WCCGGW	2 cut(s)	40, 3582
BsaXI	ACNNNNNCTCC	2 cut(s)	4325, 4355
Bse3DI	GCAATG	5 cut(s)	369, 396, 1032, 1777, 4124
Bse8I	GATNNNNATC	3 cut(s)	544, 2964, 3270
BseAI	TCCGGA	2 cut(s)	40, 3582
BseBI	CCWGG	5 cut(s)	512, 896, 1884, 2015, 2929
BseJI	GATNNNNATC	3 cut(s)	544, 2964, 3270
BseMI	GCAATG	5 cut(s)	369, 396, 1032, 1777, 4124
BseMII	CTCAG	7 cut(s)	2035, 2306, 2367, 2436, 3594, 4175, 4359
BseRI	GAGGAG	3 cut(s)	2157, 4300, 4333
BseSI	GKGCMC	2 cut(s)	1734, 3250
BsgI	GTGCAG	5 cut(s)	444, 980, 987, 1971, 3901
Bsh1236I	CGCG	1 cut(s)	1854
Bsh1285I	CGRYCG	1 cut(s)	3910
BshFI	GGCC	5 cut(s)	1504, 2067, 2109, 2833, 3254
BshNI	GGYRCC	2 cut(s)	3037, 3967
BsiEI	CGRYCG	1 cut(s)	3910
BsiHKAI	GWGCWC	5 cut(s)	925, 2022, 3250, 3946, 4343
BsiHKCI	CYCGRG	3 cut(s)	648, 2759, 3348
BsiSI	CCGG	3 cut(s)	41, 3482, 3583
BslFI	GGGAC	2 cut(s)	4214, 4310
BsmAI	GTCTC	6 cut(s)	651, 992, 1533, 2295, 3570, 3838
BsmFI	GGGAC	2 cut(s)	4214, 4310
BsmI	GAATGC	1 cut(s)	1137
BsnI	GGCC	5 cut(s)	1504, 2067, 2109, 2833, 3254
Bso31I	GGTCTC	2 cut(s)	2295, 3570
BsoBI	CYCGRG	3 cut(s)	648, 2759, 3348
Bsp1286I	GDGCHC	7 cut(s)	925, 1734, 2022, 3250, 3946, 4075, 4343
Bsp13I	TCCGGA	2 cut(s)	40, 3582
Bsp1407I	TGTACA	2 cut(s)	902, 1958
Bsp19I	CCATGG	2 cut(s)	558, 2112
BspACI	CCGC	6 cut(s)	1923, 2064, 2433, 2990, 3922, 3980
BspANI	GGCC	5 cut(s)	1504, 2067, 2109, 2833, 3254
BspCNI	CTCAG	7 cut(s)	2034, 2305, 2368, 2435, 3595, 4176, 4358
BspEI	TCCGGA	2 cut(s)	40, 3582
BspFNI	CGCG	1 cut(s)	1854
BspQI	GCTCTTC	1 cut(s)	3656
BspT107I	GGYRCC	2 cut(s)	3037, 3967
BspTI	CTTAAG	1 cut(s)	2768
BspTNI	GGTCTC	2 cut(s)	2295, 3570
BsrDI	GCAATG	5 cut(s)	369, 396, 1032, 1777, 4124
BsrGI	TGTACA	2 cut(s)	902, 1958
BssNAI	GTATAC	2 cut(s)	1816, 4194
BssNI	GRCGYC	2 cut(s)	3038, 3968
BssT1I	CCWWGG	7 cut(s)	494, 558, 1071, 2112, 2531, 2828, 3092
Bst1107I	GTATAC	2 cut(s)	1816, 4194
Bst2UI	CCWGG	5 cut(s)	512, 896, 1884, 2015, 2929
Bst6I	CTCTTC	4 cut(s)	1381, 1393, 1491, 3656
BstACI	GRCGYC	2 cut(s)	3038, 3968
BstAFI	CTTAAG	1 cut(s)	2768
BstAPI	GCANNNNNTGC	2 cut(s)	3172, 4063
BstAUI	TGTACA	2 cut(s)	902, 1958
BstBAI	YACGTR	1 cut(s)	1813
BstC8I	GCNNGC	7 cut(s)	456, 1343, 1901, 2507, 2794, 3415, 3972
BstDSI	CCRYGG	2 cut(s)	558, 2112
BstFNI	CGCG	1 cut(s)	1854
BstH2I	RGCGCY	4 cut(s)	2506, 2985, 3041, 3971
BstHHI	GCGC	5 cut(s)	1039, 2505, 2984, 3040, 3970
BstMAI	GTCTC	6 cut(s)	651, 992, 1533, 2295, 3570, 3838
BstMCI	CGRYCG	1 cut(s)	3910
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 1229, 3172, 3677, 4063, 4385
BstNI	CCWGG	5 cut(s)	512, 896, 1884, 2015, 2929
BstNSI	RCATGY	3 cut(s)	458, 1791, 3773
BstPAI	GACNNNNGTC	1 cut(s)	689
BstSCI	CCNGG	5 cut(s)	510, 894, 1882, 2013, 2927
BstSFI	CTRYAG	2 cut(s)	716, 1748
BstSLI	GKGCMC	2 cut(s)	1734, 3250
BstUI	CGCG	1 cut(s)	1854
BstV2I	GAAGAC	5 cut(s)	436, 522, 1593, 3728, 4221
BstX2I	RGATCY	6 cut(s)	19, 263, 1217, 2941, 3073, 3265
BstXI	CCANNNNNNTGG	1 cut(s)	4335
BstYI	RGATCY	6 cut(s)	19, 263, 1217, 2941, 3073, 3265
BstZ17I	GTATAC	2 cut(s)	1816, 4194
BsuRI	GGCC	5 cut(s)	1504, 2067, 2109, 2833, 3254
BtgI	CCRYGG	2 cut(s)	558, 2112
BtrI	CACGTC	1 cut(s)	4089
BtsI	GCAGTG	4 cut(s)	794, 968, 2595, 4327
Cac8I	GCNNGC	7 cut(s)	456, 1343, 1901, 2507, 2794, 3415, 3972
CaiI	CAGNNNCTG	2 cut(s)	3343, 3392
CfoI	GCGC	5 cut(s)	1039, 2505, 2984, 3040, 3970
Cfr13I	GGNCC	4 cut(s)	2108, 2708, 2832, 3101
Csp6I	GTAC	6 cut(s)	484, 735, 903, 1959, 3928, 4279
CviQI	GTAC	6 cut(s)	484, 735, 903, 1959, 3928, 4279
DinI	GGCGCC	2 cut(s)	3039, 3969
DraI	TTTAAA	2 cut(s)	172, 2652
DraIII	CACNNNGTG	2 cut(s)	929, 1511
DriI	GACNNNNNGTC	1 cut(s)	2818
EaeI	YGGCCR	1 cut(s)	2065
Eam1104I	CTCTTC	4 cut(s)	1381, 1393, 1491, 3656
Eam1105I	GACNNNNNGTC	1 cut(s)	2818
EarI	CTCTTC	4 cut(s)	1381, 1393, 1491, 3656
Ecl136II	GAGCTC	1 cut(s)	2020
Eco130I	CCWWGG	7 cut(s)	494, 558, 1071, 2112, 2531, 2828, 3092
Eco24I	GRGCYC	2 cut(s)	2022, 4075
Eco31I	GGTCTC	2 cut(s)	2295, 3570
Eco47I	GGWCC	2 cut(s)	2708, 3101
Eco47III	AGCGCT	1 cut(s)	2504
Eco53kI	GAGCTC	1 cut(s)	2020
Eco57I	CTGAAG	3 cut(s)	1566, 2745, 3369
Eco88I	CYCGRG	3 cut(s)	648, 2759, 3348
EcoICRI	GAGCTC	1 cut(s)	2020
EcoO109I	RGGNCCY	1 cut(s)	2108
EcoRI	GAATTC	2 cut(s)	2578, 2916
EcoRII	CCWGG	5 cut(s)	510, 894, 1882, 2013, 2927
EcoT14I	CCWWGG	7 cut(s)	494, 558, 1071, 2112, 2531, 2828, 3092
EcoT22I	ATGCAT	2 cut(s)	398, 1139
EcoT38I	GRGCYC	2 cut(s)	2022, 4075
EgeI	GGCGCC	2 cut(s)	3039, 3969
EheI	GGCGCC	2 cut(s)	3039, 3969
ErhI	CCWWGG	7 cut(s)	494, 558, 1071, 2112, 2531, 2828, 3092
FalI	AAGNNNNNCTT	4 cut(s)	1887, 1919, 3406, 3438
FaqI	GGGAC	2 cut(s)	4214, 4310
FauI	CCCGC	2 cut(s)	3929, 3973
FauNDI	CATATG	2 cut(s)	471, 3559
FbaI	TGATCA	3 cut(s)	1459, 2734, 3150
FblI	GTMKAC	5 cut(s)	715, 1815, 2461, 2750, 4193
FriOI	GRGCYC	2 cut(s)	2022, 4075
FspI	TGCGCA	1 cut(s)	1038
GlaI	GCGC	5 cut(s)	1038, 2504, 2983, 3039, 3969
GsuI	CTGGAG	4 cut(s)	1431, 1577, 2036, 3427
HaeII	RGCGCY	4 cut(s)	2506, 2985, 3041, 3971
HaeIII	GGCC	5 cut(s)	1504, 2067, 2109, 2833, 3254
HapII	CCGG	3 cut(s)	41, 3482, 3583
HhaI	GCGC	5 cut(s)	1039, 2505, 2984, 3040, 3970
Hin1I	GRCGYC	2 cut(s)	3038, 3968
Hin6I	GCGC	5 cut(s)	1037, 2503, 2982, 3038, 3968
HinP1I	GCGC	5 cut(s)	1037, 2503, 2982, 3038, 3968
HincII	GTYRAC	2 cut(s)	1015, 2407
HindII	GTYRAC	2 cut(s)	1015, 2407
HindIII	AAGCTT	2 cut(s)	1548, 1901
HpaI	GTTAAC	1 cut(s)	2407
HpaII	CCGG	3 cut(s)	41, 3482, 3583
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4IV	ACGT	7 cut(s)	826, 1812, 1990, 2245, 2745, 3177, 4088
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 1229, 3172, 3677, 4063, 4385
HpySE526I	ACGT	7 cut(s)	826, 1812, 1990, 2245, 2745, 3177, 4088
Hsp92I	GRCGYC	2 cut(s)	3038, 3968
HspAI	GCGC	5 cut(s)	1037, 2503, 2982, 3038, 3968
KasI	GGCGCC	2 cut(s)	3037, 3967
Kpn2I	TCCGGA	2 cut(s)	40, 3582
Ksp22I	TGATCA	3 cut(s)	1459, 2734, 3150
KspAI	GTTAAC	1 cut(s)	2407
LguI	GCTCTTC	1 cut(s)	3656
MaeII	ACGT	7 cut(s)	826, 1812, 1990, 2245, 2745, 3177, 4088
MfeI	CAATTG	1 cut(s)	2700
MflI	RGATCY	6 cut(s)	19, 263, 1217, 2941, 3073, 3265
MhlI	GDGCHC	7 cut(s)	925, 1734, 2022, 3250, 3946, 4075, 4343
MluI	ACGCGT	1 cut(s)	1852
Mly113I	GGCGCC	2 cut(s)	3038, 3968
MmeI	TCCRAC	6 cut(s)	241, 1155, 1605, 3189, 3447, 3890
Mph1103I	ATGCAT	2 cut(s)	398, 1139
MroI	TCCGGA	2 cut(s)	40, 3582
MroXI	GAANNNNTTC	2 cut(s)	2336, 2475
MslI	CAYNNNNRTG	2 cut(s)	596, 618
MspCI	CTTAAG	1 cut(s)	2768
MspI	CCGG	3 cut(s)	41, 3482, 3583
MspR9I	CCNGG	5 cut(s)	512, 896, 1884, 2015, 2929
MunI	CAATTG	1 cut(s)	2700
Mva1269I	GAATGC	1 cut(s)	1137
MvaI	CCWGG	5 cut(s)	512, 896, 1884, 2015, 2929
MvnI	CGCG	1 cut(s)	1854
MwoI	GCNNNNNNNGC	6 cut(s)	197, 1229, 3172, 3677, 4063, 4385
NarI	GGCGCC	2 cut(s)	3038, 3968
NcoI	CCATGG	2 cut(s)	558, 2112
NdeI	CATATG	2 cut(s)	471, 3559
NmuCI	GTSAC	6 cut(s)	589, 1302, 2140, 2520, 3432, 3522
NsbI	TGCGCA	1 cut(s)	1038
NsiI	ATGCAT	2 cut(s)	398, 1139
NspI	RCATGY	3 cut(s)	458, 1791, 3773
PaeI	GCATGC	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	3656
PctI	GAATGC	1 cut(s)	1137
PdmI	GAANNNNTTC	2 cut(s)	2336, 2475
PflMI	CCANNNNNTGG	5 cut(s)	1511, 2705, 3098, 3409, 3499
PfoI	TCCNGGA	1 cut(s)	2013
PluTI	GGCGCC	2 cut(s)	3041, 3971
Ppu21I	YACGTR	1 cut(s)	1813
PshAI	GACNNNNGTC	1 cut(s)	689
PshBI	ATTAAT	1 cut(s)	207
PsiI	TTATAA	1 cut(s)	3707
Psp124BI	GAGCTC	1 cut(s)	2022
Psp6I	CCWGG	5 cut(s)	510, 894, 1882, 2013, 2927
PspGI	CCWGG	5 cut(s)	510, 894, 1882, 2013, 2927
PspPI	GGNCC	4 cut(s)	2108, 2708, 2832, 3101
PstNI	CAGNNNCTG	2 cut(s)	3343, 3392
PsuI	RGATCY	6 cut(s)	19, 263, 1217, 2941, 3073, 3265
RsaI	GTAC	6 cut(s)	485, 736, 904, 1960, 3929, 4280
RsaNI	GTAC	6 cut(s)	484, 735, 903, 1959, 3928, 4279
RseI	CAYNNNNRTG	2 cut(s)	596, 618
SacI	GAGCTC	1 cut(s)	2022
SapI	GCTCTTC	1 cut(s)	3656
Sau96I	GGNCC	4 cut(s)	2108, 2708, 2832, 3101
ScrFI	CCNGG	5 cut(s)	512, 896, 1884, 2015, 2929
SduI	GDGCHC	7 cut(s)	925, 1734, 2022, 3250, 3946, 4075, 4343
SfcI	CTRYAG	2 cut(s)	716, 1748
SfoI	GGCGCC	2 cut(s)	3039, 3969
SinI	GGWCC	2 cut(s)	2708, 3101
SmiMI	CAYNNNNRTG	2 cut(s)	596, 618
SmlI	CTYRAG	2 cut(s)	995, 2768
SmoI	CTYRAG	2 cut(s)	995, 2768
SphI	GCATGC	1 cut(s)	458
SsiI	CCGC	6 cut(s)	1923, 2064, 2433, 2990, 3922, 3980
SspDI	GGCGCC	2 cut(s)	3037, 3967
SspI	AATATT	1 cut(s)	2881
SstI	GAGCTC	1 cut(s)	2022
StyD4I	CCNGG	5 cut(s)	510, 894, 1882, 2013, 2927
StyI	CCWWGG	7 cut(s)	494, 558, 1071, 2112, 2531, 2828, 3092
TaiI	ACGT	7 cut(s)	829, 1815, 1993, 2248, 2748, 3180, 4091
TaqI	TCGA	7 cut(s)	1655, 1918, 2349, 3055, 3294, 3574, 4307
TaqII	GACCGA	1 cut(s)	3896
TatI	WGTACW	5 cut(s)	483, 734, 902, 1958, 4278
TauI	GCSGC	2 cut(s)	2067, 2435
TseFI	GTSAC	6 cut(s)	589, 1302, 2140, 2520, 3432, 3522
Tsp45I	GTSAC	6 cut(s)	589, 1302, 2140, 2520, 3432, 3522
TspGWI	ACGGA	2 cut(s)	2384, 3468
Van91I	CCANNNNNTGG	5 cut(s)	1511, 2705, 3098, 3409, 3499
Vha464I	CTTAAG	1 cut(s)	2768
VneI	GTGCAC	1 cut(s)	3246
VpaK11BI	GGWCC	2 cut(s)	2708, 3101
VspI	ATTAAT	1 cut(s)	207
XceI	RCATGY	3 cut(s)	458, 1791, 3773
XcmI	CCANNNNNNNNNTGG	2 cut(s)	518, 1094
XmaJI	CCTAGG	2 cut(s)	2531, 2828
XmiI	GTMKAC	5 cut(s)	715, 1815, 2461, 2750, 4193
XmnI	GAANNNNTTC	2 cut(s)	2336, 2475
Zsp2I	ATGCAT	2 cut(s)	398, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.