Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014453.1

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 647

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgtatagtatgtgtcagtactgtggtgcagaattgacacaacctaaagatgaaaagaaggaacatgataatctgaaaaccttaccgtcagatagggcttgcaaagcttgtgcagaaaaacaggagagaggatctaccaagcaggccaatggaatgtcaaggccaacgatcagtccaatgacttccttgtcaagcagtgatagttctgtctccaactgcagtgaattttctgttgatgtcaactcatatgatcgtacggcaggcacgaataatgaccagctatgggaacccccatctgcaaacacttgtggatcatctagcgaagctgagaattcaaattcttcagaaggtgaaatggctgactggatatgggatcctcctgaacctgatgatccggaggacgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

4.23

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	394
AclWI	GGATC	5 cut(s)	139, 319, 368, 381, 386
AcsI	RAATTY	3 cut(s)	224, 331, 337
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	20, 256
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	336
AluBI	AGCT	3 cut(s)	107, 280, 326
AluI	AGCT	3 cut(s)	107, 280, 326
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	5 cut(s)	139, 319, 368, 381, 386
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	2 cut(s)	144, 161
ApoI	RAATTY	3 cut(s)	224, 331, 337
AsuHPI	GGTGA	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	373
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	217
BmcAI	AGTACT	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	288, 375
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	368
BseAI	TCCGGA	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	368
BsgI	GTGCAG	2 cut(s)	48, 132
BshFI	GGCC	2 cut(s)	146, 163
BsiSI	CCGG	1 cut(s)	395
BsiWI	CGTACG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	146, 163
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
BspANI	GGCC	2 cut(s)	146, 163
BspCNI	CTCAG	1 cut(s)	319
BspEI	TCCGGA	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	288, 375
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	5 cut(s)	139, 319, 368, 381, 386
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
Bst4CI	ACNGT	2 cut(s)	23, 87
BstC8I	GCNNGC	3 cut(s)	100, 144, 262
BstDEI	CTNAG	1 cut(s)	327
BstKTI	GATC	6 cut(s)	134, 171, 253, 314, 376, 394
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	131, 373
BstYI	RGATCY	2 cut(s)	131, 373
BsuRI	GGCC	2 cut(s)	146, 163
BtsI	GCAGTG	2 cut(s)	202, 226
BtsIMutI	CAGTG	2 cut(s)	202, 226
Cac8I	GCNNGC	3 cut(s)	100, 144, 262
Csp6I	GTAC	2 cut(s)	19, 255
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	7 cut(s)	98, 107, 146, 163, 280, 326, 359
CviKI_1	RGCY	7 cut(s)	98, 107, 146, 163, 280, 326, 359
CviQI	GTAC	2 cut(s)	19, 255
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	6 cut(s)	133, 170, 252, 313, 375, 393
DpnII	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
DrdI	GACNNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	331
FaeI	CATG	1 cut(s)	68
FaiI	YATR	7 cut(s)	6, 11, 66, 247, 249, 283, 370
FatI	CATG	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	247
FspBI	CTAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	146, 163
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	105
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	75, 91, 346
Hpy188III	TCNNGA	2 cut(s)	380, 395
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	52, 341
HpyCH4III	ACNGT	2 cut(s)	23, 87
HpyCH4V	TGCA	5 cut(s)	29, 102, 113, 219, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	68
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
LpnPI	CCDG	7 cut(s)	107, 128, 246, 290, 349, 393, 399
MaeI	CTAG	1 cut(s)	318
MalI	GATC	6 cut(s)	133, 170, 252, 313, 375, 393
MboI	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
MboII	GAAGA	1 cut(s)	333
MflI	RGATCY	2 cut(s)	131, 373
MluCI	AATT	4 cut(s)	32, 224, 331, 337
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	3 cut(s)	122, 387, 391
MroI	TCCGGA	1 cut(s)	394
MspI	CCGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	288, 375
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
Pfl23II	CGTACG	1 cut(s)	254
PspLI	CGTACG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	288, 375
PstI	CTGCAG	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	131, 373
RsaI	GTAC	2 cut(s)	20, 256
RsaNI	GTAC	2 cut(s)	19, 255
Sau3AI	GATC	6 cut(s)	131, 168, 250, 311, 373, 391
ScaI	AGTACT	1 cut(s)	20
SetI	ASST	7 cut(s)	46, 83, 109, 282, 328, 352, 388
SfcI	CTRYAG	1 cut(s)	217
Sse9I	AATT	4 cut(s)	32, 224, 331, 337
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	23, 87
TasI	AATT	4 cut(s)	32, 224, 331, 337
TatI	WGTACW	1 cut(s)	18
TscAI	CASTG	2 cut(s)	202, 226
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	202, 226
XapI	RAATTY	3 cut(s)	224, 331, 337
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.