RchiOBHm_Chr6g0272731
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase FAB1D

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
33115536 .. 33125061
9526 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24469

Sequence Viewer

Length: 4788 bp
ATGTATAGTATGTGTCAGTACTGTGGTGCAGAATTGACACAACCTAAAGATGAAAAGAAGGAACATGATAATCTGACAACCTTACCGTCAGATAGGGCTTGCAAAGCTTGTGCGGAAAAACAGGAGCGAGGATCTATCAAGCAGGCCAATGGAATGTCAAGGCCAATGATCAGTCCAATGACTTCCTTGTCAAGCAGTGATAGTTCTGTCTCCAACTGCAGTGAATTTTCTGTTGACGTCAACTCATATGATCGTACGGCAGGCACGAATAATGACCAGCTATGGGAACCCCCTTCTGCAAACACTTGTGGATCATCTAGCGAAACTGAGAATTCAAATTCTTCAGAAGGTGAAATGGCCGACTGGATATGGGATCCTCCTGAACCTGATGATCCAGAGGACGATGTGGAGGGTAGTGTGGCTTTCAATGACGACGATGATGATGAGTGTGGTGATGGCATGAAATGGGGCAAACCAAGTTCTTTGAGTCGCTCTAAAGATGAAGGAAGTGGGAGCTATAAGTTTAAAGAGGAAAAACAAAGAGCAATGGAAGCAGTTATTAATGGAAAGTTCAAGGCTCTTGTCAGTCAACTACTTACATCTGTTGGTGTTGTTGGATCTTCTGGGGAGGATGGTGAAAGTTGGGTGGACATTATTACTTCTTTGTCATGGGAAGCTGCTTCATTTTTGAAACCTGATGCTGTTGTTGGTAAAGCAATGGATATAGATGGCTATATGAAAGTAAAATGCATTGCAACTGGTGATCGCTGCCAAAGTCAATTAGTAAAAGGTATGGTCTTCAAAAAGCATGCTGCACACAAGCATATGCCAATCAAGTACAAGAACCCAAGGTTGTTGCTAATCCAGGGAGTTCTTGGTCAGTCTTCAAGTGGATTGTCATCATTTGATTCCATGGAGCAGGAACAAGATTACTTGAAGTATGTCACCGAAATGCTAGAACTGTGTCATCCAAATGTGGTTTTAGTGGAAAAAACTGTGTCTCGGGATATTCAAGAGTCTATTCTCGCAAAAAGAATGACACTGGTCTATGACATGAAGCCCCATCGTCTACAGAGAATTGCTCTTTGTACTGGATCACCAATTTTATCATCAGATACAATGACGAGTCAAAAGCTAAAGCAGTGCGACTCTTTTCACATTGAAAAATTTATAGAGGAACGTGCTGGTTTGGGTGGAGGAAAGATGCCAAGTAAAACATTGATGTTTATTGAGGGCTGTCCTACACGCCAGGGTTGTACAATTTTGCTGAAAGGAGCACAGAGTGATGAATTGAAGAAGATCAAGTGTGTAGTGCAGTGTGCAGTTATCTTGGCATATCATTTAATACTTGAGACTTCTTTCCTTGTTGACCAGAGAGCAATGTTCTTTGCGCATCCTTTGTTTGGTGGAGCAAATCACTTGTCCAAGGAAGTAGCAAACCAGTTTTCCACTGGTAACAAATCCTTTAATTTAGCATCTAGTAATTCATGCATTCCACATCATAGGGAGTCTAGTGGTGAAACTGAGTCGGATGCAGTTGATATTCTCATTTCTGATGGATTCCATGAAGGATCTTCCCAAAATGCTGACTTGGAATTACAAGGCAGTTCCACATTATATGAACCATACAAACCTGTCATATTTTCTGGCTTCTCGTCACTTTCAGCTTCACTAAAGAAAGTTATAGGGGAAAGCTTGCCTCTAGCATCTACTTCTTATCAATCTCTCTCTTCATACTTTGGATTAAATGGAAGAGAACTGAATGGTCAGATTACAAAGTCTGTTTCTATTTCAACATCTCCAGAGGCGACTGATCAGTGTGATGTTGAAGATAGAGGAAGTTCTGATGAAGAGAGGCCACGTAGTGGTGGAGAAATCCAGTCTCCATTTACTTGCACTGAAGCTTCTCTGGAGATTGAAAAGGATGGTGGCAACAATGAAGACCCAATGCAGAGCAAGAATGACATCAGCAAAGTGTTGGATTCCCAGAGTATTTTGGTTTTGATGTCGAGCAAGAATGTTAAAGGGAATGTTTGTGAGCAAAGCCATTTTTCTCATATCATGTTCTACAAGAATTTTGATGTGCCAATCGGAAAGTTTCTACAGGATAATATACTGAATCAGAGAAGCCATTGCACAGCATGTGGTGAGCTGCCAGAAGCTCACGTATACTGTTATGCACATCATAACAAGCAGCTTACCATACGCGTTAAACGGCTTCGTACAGGGCATTTGCCTGGTGAAGCAGAAGGCAAGCTTTGGATGTGGAGTCGATGCGGTAAATGTAAATCTGTGAAGGGAAAATCAAAGTGTACAAAAAGAGTCTTGATTTCCAGTGCTGCACGTTGTCTTTCATTTGGAAATTTCCTGGAGCTCAGTTTCTCAAATCACTCTCTGTCTAATATATTTTCTAGCTGCGGCCATTCTTTGCAAATGGACTTTCTCTACTTCTTTGGATTAGGCCCCATGGTTGCTATGTTCAAAAACTCCCCGGTCACAATTTATACTGTGTCTGTGCCTCCTCTAAAACTTCCATTCAGCAATTCAATTAGGCAAGAGTGGTTTGCAAAAGAAATTGAGAATGTATTAGCGAAAGGACGTATGCTGTTAAGTGAGGTTGGCAATTCTTTGAAGAATATTAGGTCTCAGTTTGATGGCATGACTTTGAAACTGCAAGGCTCCTTGAAAAGATTCTCTGACATCGAAGATATGCTAAGTCAAGAAGAATCTGAGCGAGAGGTAAACATCCGTAATGCTGTTAACGAGAATAGGAACTCAGACCAAGCCGCTTACAAACTTCTTGGCTTTAACCGTGTACATTGGGAACTTCTTCTTCAATCATGCGTTTGGGATCAGCGCTTGCACTCGTTACTGTCACCAACTCCTATGATGATCCATTCCATAGCTTCTGATAAGGTAAGCCAAGAAGTGAATTCAGGTATTCATGGCACTGCTGACAGTATTATGGGAAGAGGTGAAAACTGCATTGATGGTTCTTCCAATTTAAAAGTTGAGTTAAATATAGCTGCAAAAGCAGATGAATTTCCAATTAAAGAAATTCCAATTGGTGGTCCTGTTGAAGAATCTGAAGGAGCTGATCAACATAACGAGTCTACTTTGCCTGAGGGTCTTAAGACACCAAATGTGGGTGGTGCAAGGCCAAAAAGATTTGCTGACCACAAGTCCAATCCTAGGCCCAATGGCTCCACTGATGGTCATTCTGACAAGTATGTTGAAGGGAATATTACTTTCGCTGATGAACTAGATGAAGATAGAGGAATTCCTGTTTCCAGGGAAAATGAGGATCCTTGTTCAGTTGATTCAAATCTATCACTGATGGGTGCTTCTCCGCACTCACGATCATCCAAGTTTGACAGTTCAAGTGATTGGTTTTGGGCGCCCTTCTCTGAAATTCGACAAGTAGGTATGAAGGATCTACAAAGAGTCCTTCCAAGGTTTGGACCCATGAGTAGCTATACATCAGAATACTTACCCACAGCATATCAGTTGATCACAGAGGAAGGGCAAATGTTGCACGTTCCTCTAGGAACTGATAATTATATAGTGTCGGACTATGATGGTGAACTTTCAAGTGTGATTGCTTGTGCACTGGCCTTTTTGAAAGATCCACATCTTCAAACAGATGTTCTTGTTGATGACGAGTGTGGAATTGCTGCTAGAACATTTGAGAGTTTACAGAGTCTGGCTCGGGTTCCTTCTCCGCATCAAAGCTCAAATGGTTCTTCAGATTCTGATTCAGTCCATTCTATGGCAAGCATTTCTTTTGATGAGTCACGCTTCTCCAGTTTTGACGGATTGAACTTGTTGGATTCTCTGGTTCCGGTAGGAACCCACCCAATGGTAACTCTAAGAGTTGCCAAGTCACTTGGCAAGGAGAAATATACTGTATTATGTCCATATGCCAATCAGTTTCGAGACCTCCGGAATCATTGCTGCCAATCTGAGGTTGATTATATTGCTTCCCTAAGCCGTTGTAGAAACTGGGATGCTAAAGGTGGGAAGAGCAAAGCCTTTTTTGCCAAAACAGTTGATGACAGGTTGATTATAAAAGAAATCAAGAAGACAGAATTTGAGTCATTTGTAAAGTTTGCAGATGCTTATTTTGAGCACGTGAACAAGTCATTTGAGAAGGGAAATCAAACTTGCCTTGCAAAAATTCTTGGGATTTATCAGGTGGTTGTGAGACAGACAAAAAGTGGGAAAGAGATGAAACATGATCTGATGGTTATGGAGAACCTTACCTTCGGTCGGAACTGCACCCGCCTGTACGATCTTAAAGGTGCTCTACATGACCGTTTCAATTTGGCGCCTGCTGGTGCGGGAGATGTTCTTCTGGATCAGAACTTTGTCAATGACATGAACTCATCTCCATTTTATGTCAGTAACCAAGAAAAGCAAAAATTGCAACGGGCTCTGTGGAATGACACGTCTTTTCTCAATTCAATCAATGTTATGGATTATTCATTGCTTGTCGGGATTGATACACACAGACAGGAGCTTGTATGTGGCATTATTGATTATCTGAGGCAGTATACATGGGACAAGCACCTAGAGTCATGGGTGAAGTCTTCACTTGTGCCAAAGAATGTCTTGCCGACTGTTATCTCTCCTAAAGAGTACAAGAGGAGATTCAGGAAGTTCATGTCGAAGAATATATGCAGTGTCCCAGATCACTGGTGCTCCTCAGAATCCTCTGATCCTTGTGACGAATATGCTGCTAGAAATGCTGATTCTCCCAAACAAAATCCGAAAGGAAAGGGGGGTTAA

Protein Analysis

1595

Amino Acids

176.95

Weight (kDa)

5.69

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 211 - 450 2.3e-20 TCP-1/cpn60 chaperonin family
PIP5K PF01504 1338 - 1504 6.6e-34 Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K PF01504 1505 - 1557 9.9e-09 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4067
AasI GACNNNNNNGTC 1 cut(s) 187
AatII GACGTC 1 cut(s) 240
Acc16I TGCGCA 1 cut(s) 1392
AccB1I GGYRCC 2 cut(s) 3397, 4327
AccB7I CCANNNNNTGG 5 cut(s) 1865, 3068, 3458, 3769, 3859
AccI GTMKAC 4 cut(s) 1069, 2169, 3113, 4553
AccII CGCG 1 cut(s) 2208
AccIII TCCGGA 1 cut(s) 3942
AciI CCGC 8 cut(s) 113, 2277, 2418, 2787, 3350, 3722, 4282, 4340
AcoI YGGCCR 2 cut(s) 357, 2419
AcuI CTGAAG 4 cut(s) 327, 1920, 3108, 3729
AcvI CACGTG 1 cut(s) 4132
AcyI GRCGYC 3 cut(s) 237, 3398, 4328
AdeI CACNNNGTG 2 cut(s) 1283, 1865
AfeI AGCGCT 1 cut(s) 2858
AflII CTTAAG 1 cut(s) 3131
AflIII ACRYGT 2 cut(s) 2206, 4446
AhdI GACNNNNNGTC 1 cut(s) 3181
AjiI CACGTC 1 cut(s) 4449
AjnI CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
AjuI GAANNNNNNNTTGG 2 cut(s) 3048, 3080
Alw21I GWGCWC 6 cut(s) 1279, 2376, 3610, 4131, 4306, 4703
Alw26I GTCTC 7 cut(s) 214, 1005, 1346, 1887, 2649, 3930, 4198
Alw44I GTGCAC 1 cut(s) 3606
AlwNI CAGNNNCTG 2 cut(s) 3703, 3752
Ama87I CYCGRG 2 cut(s) 1002, 3708
Aor13HI TCCGGA 1 cut(s) 3942
Aor51HI AGCGCT 1 cut(s) 2858
AoxI GGCC 9 cut(s) 144, 161, 357, 1856, 2419, 2461, 3158, 3194, 3612
ApaLI GTGCAC 1 cut(s) 3606
ArsI GACNNNNNNTTYG 2 cut(s) 1406, 1438
AseI ATTAAT 1 cut(s) 561
Asp700I GAANNNNTTC 2 cut(s) 2690, 2829
AspA2I CCTAGG 1 cut(s) 3191
AspLEI GCGC 4 cut(s) 1393, 2859, 3400, 4330
AspS9I GGNCC 4 cut(s) 2462, 3071, 3195, 3461
AsuC2I CCSGG 1 cut(s) 2492
AvaI CYCGRG 2 cut(s) 1002, 3708
AvaII GGWCC 2 cut(s) 3071, 3461
AvrII CCTAGG 1 cut(s) 3191
AxyI CCTNAGG 1 cut(s) 3123
BaeGI GKGCMC 1 cut(s) 3610
BamHI GGATCC 2 cut(s) 373, 3304
BanI GGYRCC 2 cut(s) 3397, 4327
BanII GRGCYC 2 cut(s) 2376, 4435
BbrPI CACGTG 1 cut(s) 4132
BbsI GAAGAC 5 cut(s) 790, 876, 1947, 4088, 4581
Bbv12I GWGCWC 6 cut(s) 1279, 2376, 3610, 4131, 4306, 4703
BceAI ACGGC 3 cut(s) 273, 2231, 3975
BcgI CGANNNNNNTGC 2 cut(s) 4718, 4752
BciT130I CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
BclI TGATCA 4 cut(s) 168, 1813, 3097, 3510
BcnI CCSGG 1 cut(s) 2492
BcoDI GTCTC 7 cut(s) 214, 1005, 1346, 1887, 2649, 3930, 4198
BfmI CTRYAG 3 cut(s) 217, 1070, 2102
BfoI RGCGCY 3 cut(s) 2860, 3401, 4331
BfrI CTTAAG 1 cut(s) 3131
BlnI CCTAGG 1 cut(s) 3191
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
Bme18I GGWCC 2 cut(s) 3071, 3461
BmeRI GACNNNNNGTC 1 cut(s) 3181
BmeT110I CYCGRG 2 cut(s) 1002, 3708
BmgBI CACGTC 1 cut(s) 4449
BmgT120I GGNCC 4 cut(s) 2462, 3071, 3195, 3461
BmrFI CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
BmrI ACTGGG 1 cut(s) 4012
BmuI ACTGGG 1 cut(s) 4012
BoxI GACNNNNGTC 1 cut(s) 1043
BpiI GAAGAC 5 cut(s) 790, 876, 1947, 4088, 4581
BplI GAGNNNNNCTC 4 cut(s) 1066, 1098, 3691, 3723
BpmI CTGGAG 4 cut(s) 1785, 1931, 2390, 3787
Bpu10I CCTNAGC 1 cut(s) 3986
BpuEI CTTGAG 1 cut(s) 1370
BpuMI CCSGG 1 cut(s) 2492
BsaAI YACGTR 3 cut(s) 1862, 2167, 4132
BsaBI GATNNNNATC 3 cut(s) 898, 3324, 3630
BsaHI GRCGYC 3 cut(s) 237, 3398, 4328
BsaI GGTCTC 2 cut(s) 2649, 3930
BsaWI WCCGGW 2 cut(s) 3841, 3942
BsaXI ACNNNNNCTCC 2 cut(s) 4685, 4715
Bse21I CCTNAGG 1 cut(s) 3123
Bse3DI GCAATG 7 cut(s) 552, 723, 750, 1386, 2131, 3949, 4484
Bse8I GATNNNNATC 3 cut(s) 898, 3324, 3630
BseAI TCCGGA 1 cut(s) 3942
BseBI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
BseGI GGATG 9 cut(s) 637, 967, 1393, 1537, 1930, 2268, 2745, 3362, 4012
BseJI GATNNNNATC 3 cut(s) 898, 3324, 3630
BseMI GCAATG 7 cut(s) 552, 723, 750, 1386, 2131, 3949, 4484
BseRI GAGGAG 3 cut(s) 2511, 4660, 4693
BseSI GKGCMC 1 cut(s) 3610
BsgI GTGCAG 6 cut(s) 48, 798, 1334, 1341, 2325, 4261
Bsh1236I CGCG 1 cut(s) 2208
Bsh1285I CGRYCG 1 cut(s) 4270
BshFI GGCC 9 cut(s) 146, 163, 359, 1858, 2421, 2463, 3160, 3196, 3614
BshNI GGYRCC 2 cut(s) 3397, 4327
BsiEI CGRYCG 1 cut(s) 4270
BsiHKAI GWGCWC 6 cut(s) 1279, 2376, 3610, 4131, 4306, 4703
BsiHKCI CYCGRG 2 cut(s) 1002, 3708
BsiSI CCGG 3 cut(s) 2492, 3842, 3943
BsiWI CGTACG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 4574, 4670
BsmAI GTCTC 7 cut(s) 214, 1005, 1346, 1887, 2649, 3930, 4198
BsmFI GGGAC 2 cut(s) 4574, 4670
BsmI GAATGC 1 cut(s) 1491
BsnI GGCC 9 cut(s) 146, 163, 359, 1858, 2421, 2463, 3160, 3196, 3614
Bso31I GGTCTC 2 cut(s) 2649, 3930
BsoBI CYCGRG 2 cut(s) 1002, 3708
Bsp1286I GDGCHC 7 cut(s) 1279, 2376, 3610, 4131, 4306, 4435, 4703
Bsp13I TCCGGA 1 cut(s) 3942
Bsp1407I TGTACA 3 cut(s) 1256, 2312, 2815
Bsp19I CCATGG 2 cut(s) 912, 2466
BspACI CCGC 8 cut(s) 113, 2277, 2418, 2787, 3350, 3722, 4282, 4340
BspANI GGCC 9 cut(s) 146, 163, 359, 1858, 2421, 2463, 3160, 3196, 3614
BspEI TCCGGA 1 cut(s) 3942
BspFNI CGCG 1 cut(s) 2208
BspMAI CTGCAG 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 4016
BspT107I GGYRCC 2 cut(s) 3397, 4327
BspTI CTTAAG 1 cut(s) 3131
BspTNI GGTCTC 2 cut(s) 2649, 3930
BsrDI GCAATG 7 cut(s) 552, 723, 750, 1386, 2131, 3949, 4484
BsrGI TGTACA 3 cut(s) 1256, 2312, 2815
BssNAI GTATAC 2 cut(s) 2170, 4554
BssNI GRCGYC 3 cut(s) 237, 3398, 4328
BssT1I CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3452
Bst1107I GTATAC 2 cut(s) 2170, 4554
Bst2UI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
Bst6I CTCTTC 5 cut(s) 1735, 1747, 1845, 2965, 4016
BstACI GRCGYC 3 cut(s) 237, 3398, 4328
BstAFI CTTAAG 1 cut(s) 3131
BstAPI GCANNNNNTGC 2 cut(s) 3532, 4423
BstAUI TGTACA 3 cut(s) 1256, 2312, 2815
BstBAI YACGTR 3 cut(s) 1862, 2167, 4132
BstC8I GCNNGC 9 cut(s) 100, 144, 262, 810, 1697, 2255, 2861, 3775, 4332
BstDSI CCRYGG 2 cut(s) 912, 2466
BstF5I GGATG 9 cut(s) 637, 967, 1393, 1537, 1930, 2268, 2745, 3362, 4012
BstFNI CGCG 1 cut(s) 2208
BstH2I RGCGCY 3 cut(s) 2860, 3401, 4331
BstHHI GCGC 4 cut(s) 1393, 2859, 3400, 4330
BstMAI GTCTC 7 cut(s) 214, 1005, 1346, 1887, 2649, 3930, 4198
BstMCI CGRYCG 1 cut(s) 4270
BstMWI GCNNNNNNNGC 7 cut(s) 104, 551, 3032, 3532, 4037, 4423, 4745
BstNI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
BstNSI RCATGY 2 cut(s) 812, 2145
BstPAI GACNNNNGTC 1 cut(s) 1043
BstSCI CCNGG 6 cut(s) 864, 1248, 2236, 2367, 2490, 3290
BstSFI CTRYAG 3 cut(s) 217, 1070, 2102
BstSLI GKGCMC 1 cut(s) 3610
BstUI CGCG 1 cut(s) 2208
BstV2I GAAGAC 5 cut(s) 790, 876, 1947, 4088, 4581
BstX2I RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3433, 3625
BstXI CCANNNNNNTGG 1 cut(s) 4695
BstYI RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3433, 3625
BstZ17I GTATAC 2 cut(s) 2170, 4554
Bsu36I CCTNAGG 1 cut(s) 3123
BsuRI GGCC 9 cut(s) 146, 163, 359, 1858, 2421, 2463, 3160, 3196, 3614
BtgI CCRYGG 2 cut(s) 912, 2466
BtrI CACGTC 1 cut(s) 4449
BtsCI GGATG 9 cut(s) 637, 967, 1393, 1537, 1930, 2268, 2745, 3362, 4012
BtsI GCAGTG 6 cut(s) 202, 226, 1148, 1322, 2949, 4687
Cac8I GCNNGC 9 cut(s) 100, 144, 262, 810, 1697, 2255, 2861, 3775, 4332
CaiI CAGNNNCTG 2 cut(s) 3703, 3752
CfoI GCGC 4 cut(s) 1393, 2859, 3400, 4330
Cfr13I GGNCC 4 cut(s) 2462, 3071, 3195, 3461
DinI GGCGCC 2 cut(s) 3399, 4329
DraI TTTAAA 2 cut(s) 526, 3006
DraIII CACNNNGTG 2 cut(s) 1283, 1865
DrdI GACNNNNNNGTC 1 cut(s) 187
DriI GACNNNNNGTC 1 cut(s) 3181
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 2 cut(s) 357, 2419
Eam1104I CTCTTC 5 cut(s) 1735, 1747, 1845, 2965, 4016
Eam1105I GACNNNNNGTC 1 cut(s) 3181
EarI CTCTTC 5 cut(s) 1735, 1747, 1845, 2965, 4016
Ecl136II GAGCTC 1 cut(s) 2374
Eco130I CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3452
Eco24I GRGCYC 2 cut(s) 2376, 4435
Eco31I GGTCTC 2 cut(s) 2649, 3930
Eco47I GGWCC 2 cut(s) 3071, 3461
Eco47III AGCGCT 1 cut(s) 2858
Eco53kI GAGCTC 1 cut(s) 2374
Eco57I CTGAAG 4 cut(s) 327, 1920, 3108, 3729
Eco72I CACGTG 1 cut(s) 4132
Eco81I CCTNAGG 1 cut(s) 3123
Eco88I CYCGRG 2 cut(s) 1002, 3708
EcoICRI GAGCTC 1 cut(s) 2374
EcoO109I RGGNCCY 1 cut(s) 2462
EcoRI GAATTC 3 cut(s) 331, 2932, 3279
EcoRII CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
EcoT14I CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3452
EcoT22I ATGCAT 2 cut(s) 752, 1493
EcoT38I GRGCYC 2 cut(s) 2376, 4435
EgeI GGCGCC 2 cut(s) 3399, 4329
EheI GGCGCC 2 cut(s) 3399, 4329
ErhI CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3452
FalI AAGNNNNNCTT 6 cut(s) 2241, 2273, 3766, 3798, 4595, 4627
FaqI GGGAC 2 cut(s) 4574, 4670
FauI CCCGC 2 cut(s) 4289, 4333
FauNDI CATATG 3 cut(s) 247, 825, 3919
FbaI TGATCA 4 cut(s) 168, 1813, 3097, 3510
FblI GTMKAC 4 cut(s) 1069, 2169, 3113, 4553
FokI GGATG 9 cut(s) 644, 954, 1380, 1544, 1937, 2275, 2732, 3349, 4019
FriOI GRGCYC 2 cut(s) 2376, 4435
FspI TGCGCA 1 cut(s) 1392
GlaI GCGC 4 cut(s) 1392, 2858, 3399, 4329
GsuI CTGGAG 4 cut(s) 1785, 1931, 2390, 3787
HaeII RGCGCY 3 cut(s) 2860, 3401, 4331
HaeIII GGCC 9 cut(s) 146, 163, 359, 1858, 2421, 2463, 3160, 3196, 3614
HapII CCGG 3 cut(s) 2492, 3842, 3943
HhaI GCGC 4 cut(s) 1393, 2859, 3400, 4330
Hin1I GRCGYC 3 cut(s) 237, 3398, 4328
Hin6I GCGC 4 cut(s) 1391, 2857, 3398, 4328
HinP1I GCGC 4 cut(s) 1391, 2857, 3398, 4328
HincII GTYRAC 5 cut(s) 235, 241, 590, 1369, 2761
HindII GTYRAC 5 cut(s) 235, 241, 590, 1369, 2761
HindIII AAGCTT 4 cut(s) 105, 1693, 1902, 2255
HpaI GTTAAC 1 cut(s) 2761
HpaII CCGG 3 cut(s) 2492, 3842, 3943
Hpy99I CGWCG 1 cut(s) 437
HpyCH4IV ACGT 9 cut(s) 237, 1180, 1861, 2166, 2344, 2599, 3537, 4131, 4448
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 551, 3032, 3532, 4037, 4423, 4745
HpySE526I ACGT 9 cut(s) 237, 1180, 1861, 2166, 2344, 2599, 3537, 4131, 4448
Hsp92I GRCGYC 3 cut(s) 237, 3398, 4328
HspAI GCGC 4 cut(s) 1391, 2857, 3398, 4328
KasI GGCGCC 2 cut(s) 3397, 4327
Kpn2I TCCGGA 1 cut(s) 3942
Ksp22I TGATCA 4 cut(s) 168, 1813, 3097, 3510
KspAI GTTAAC 1 cut(s) 2761
LguI GCTCTTC 1 cut(s) 4016
MaeII ACGT 9 cut(s) 237, 1180, 1861, 2166, 2344, 2599, 3537, 4131, 4448
MfeI CAATTG 1 cut(s) 3063
MflI RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3433, 3625
MhlI GDGCHC 7 cut(s) 1279, 2376, 3610, 4131, 4306, 4435, 4703
MluI ACGCGT 1 cut(s) 2206
Mly113I GGCGCC 2 cut(s) 3398, 4328
MmeI TCCRAC 7 cut(s) 237, 595, 1509, 1959, 3549, 3807, 4250
Mph1103I ATGCAT 2 cut(s) 752, 1493
MroI TCCGGA 1 cut(s) 3942
MroXI GAANNNNTTC 2 cut(s) 2690, 2829
MslI CAYNNNNRTG 2 cut(s) 950, 972
MspCI CTTAAG 1 cut(s) 3131
MspI CCGG 3 cut(s) 2492, 3842, 3943
MspR9I CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
MunI CAATTG 1 cut(s) 3063
Mva1269I GAATGC 1 cut(s) 1491
MvaI CCWGG 5 cut(s) 866, 1250, 2238, 2369, 3292
MvnI CGCG 1 cut(s) 2208
MwoI GCNNNNNNNGC 7 cut(s) 104, 551, 3032, 3532, 4037, 4423, 4745
NarI GGCGCC 2 cut(s) 3398, 4328
NciI CCSGG 1 cut(s) 2492
NcoI CCATGG 2 cut(s) 912, 2466
NdeI CATATG 3 cut(s) 247, 825, 3919
NmuCI GTSAC 7 cut(s) 943, 1656, 2494, 2874, 3792, 3882, 4724
NsbI TGCGCA 1 cut(s) 1392
NsiI ATGCAT 2 cut(s) 752, 1493
NspI RCATGY 2 cut(s) 812, 2145
PaeI GCATGC 1 cut(s) 812
PciSI GCTCTTC 1 cut(s) 4016
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 1 cut(s) 1491
PdmI GAANNNNTTC 2 cut(s) 2690, 2829
Pfl23II CGTACG 1 cut(s) 254
PflMI CCANNNNNTGG 5 cut(s) 1865, 3068, 3458, 3769, 3859
PfoI TCCNGGA 1 cut(s) 2367
PluTI GGCGCC 2 cut(s) 3401, 4331
PmaCI CACGTG 1 cut(s) 4132
PmlI CACGTG 1 cut(s) 4132
Ppu21I YACGTR 3 cut(s) 1862, 2167, 4132
PshAI GACNNNNGTC 1 cut(s) 1043
PshBI ATTAAT 1 cut(s) 561
PsiI TTATAA 1 cut(s) 4067
Psp124BI GAGCTC 1 cut(s) 2376
Psp6I CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
PspCI CACGTG 1 cut(s) 4132
PspGI CCWGG 5 cut(s) 864, 1248, 2236, 2367, 3290
PspLI CGTACG 1 cut(s) 254
PspPI GGNCC 4 cut(s) 2462, 3071, 3195, 3461
PstI CTGCAG 1 cut(s) 221
PstNI CAGNNNCTG 2 cut(s) 3703, 3752
PsuI RGATCY 7 cut(s) 131, 373, 617, 1571, 3304, 3433, 3625
RseI CAYNNNNRTG 2 cut(s) 950, 972
SacI GAGCTC 1 cut(s) 2376
SapI GCTCTTC 1 cut(s) 4016
Sau96I GGNCC 4 cut(s) 2462, 3071, 3195, 3461
ScaI AGTACT 1 cut(s) 20
ScrFI CCNGG 6 cut(s) 866, 1250, 2238, 2369, 2492, 3292
SduI GDGCHC 7 cut(s) 1279, 2376, 3610, 4131, 4306, 4435, 4703
SfcI CTRYAG 3 cut(s) 217, 1070, 2102
SfoI GGCGCC 2 cut(s) 3399, 4329
SinI GGWCC 2 cut(s) 3071, 3461
SmiMI CAYNNNNRTG 2 cut(s) 950, 972
SmlI CTYRAG 2 cut(s) 1349, 3131
SmoI CTYRAG 2 cut(s) 1349, 3131
SphI GCATGC 1 cut(s) 812
SsiI CCGC 8 cut(s) 113, 2277, 2418, 2787, 3350, 3722, 4282, 4340
SspDI GGCGCC 2 cut(s) 3397, 4327
SspI AATATT 2 cut(s) 2638, 3244
SstI GAGCTC 1 cut(s) 2376
StyD4I CCNGG 6 cut(s) 864, 1248, 2236, 2367, 2490, 3290
StyI CCWWGG 6 cut(s) 848, 912, 1425, 2466, 3191, 3452
TaiI ACGT 9 cut(s) 240, 1183, 1864, 2169, 2347, 2602, 3540, 4134, 4451
TaqI TCGA 6 cut(s) 2009, 2272, 2703, 3415, 3934, 4667
TaqII GACCGA 1 cut(s) 4256
TatI WGTACW 7 cut(s) 18, 837, 1088, 1256, 2312, 2815, 4638
TauI GCSGC 2 cut(s) 2421, 2789
TseFI GTSAC 7 cut(s) 943, 1656, 2494, 2874, 3792, 3882, 4724
Tsp45I GTSAC 7 cut(s) 943, 1656, 2494, 2874, 3792, 3882, 4724
TspGWI ACGGA 2 cut(s) 2738, 3828
Van91I CCANNNNNTGG 5 cut(s) 1865, 3068, 3458, 3769, 3859
Vha464I CTTAAG 1 cut(s) 3131
VneI GTGCAC 1 cut(s) 3606
VpaK11BI GGWCC 2 cut(s) 3071, 3461
VspI ATTAAT 1 cut(s) 561
XceI RCATGY 2 cut(s) 812, 2145
XcmI CCANNNNNNNNNTGG 2 cut(s) 872, 1448
XmaJI CCTAGG 1 cut(s) 3191
XmiI GTMKAC 4 cut(s) 1069, 2169, 3113, 4553
XmnI GAANNNNTTC 2 cut(s) 2690, 2829
ZraI GACGTC 1 cut(s) 238
ZrmI AGTACT 1 cut(s) 20
Zsp2I ATGCAT 2 cut(s) 752, 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.