Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Forward (+)

3414178 .. 3416333

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGCATTGAAAACTTCTGCCAAAGTAATGAATTTAATCAGCTTTGTAGTTTTGAAGTAAAATTTAAAATTAAATTGCTTCGTTCATATTTTCTTTCTGCTTCAATTCGTTCTTCGACTGACTCCATTTTTTCTCGCCAAATCTTCCGCCTCTTGTCTCTGCGCCTGCGGACTCTCACCAGCAACGACAACTTTTTCACTCGCTTCTCAAGTTCTTTATTTTCCCCATTTGGAGGTTGCAGACAGCCACCCCATCTCAATATGTGTCACTACTGTGGTGCGGAATTGACACAAGCCAAGGAAAAGACCTGCAAAGTTTGTGAGGAGAAACAGGAGCGAGAATTTTTTAAGCAGGGTAAGGTGATTTTGTATACAGTGCAAATGATCACTCCAACAACTTCCTTGTCAGGCAGTGACACTTCTGTCTCTAGCTGCTGTGAGTTTTCTGTGGATGTGAGCTCATGTGATAGGGTTAATCAAGAAGAAAACATAATATGCAGTTCTAAAATGGATGTCAGCAATCAATCTAATGGCAGACTACAGAATTCAAGCTTTGAGCATCCAGTAAATGGTCTTGATAATATGTATACAGTAAGGGATGTTGAGATTATACAGACAAATGATGATCATGAAGCAAAAGATAGTAACGAAAATGAAGATTCAAATTATTTAGAAGATGATACAAATGCTGGCGTCATCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

235

Amino Acids

26.57

Weight (kDa)

5.0

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	371, 587
AciI	CCGC	3 cut(s)	148, 169, 281
AcsI	RAATTY	4 cut(s)	32, 62, 341, 544
AcyI	GRCGYC	1 cut(s)	693
AfiI	CCNNNNNNNGG	2 cut(s)	233, 569
AgsI	TTSAA	5 cut(s)	11, 56, 105, 549, 663
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	4 cut(s)	43, 432, 459, 552
AluI	AGCT	4 cut(s)	43, 432, 459, 552
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	2 cut(s)	162, 430
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	4 cut(s)	32, 62, 341, 544
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	169, 373
BanII	GRGCYC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	261
BclI	TGATCA	2 cut(s)	384, 625
BcoDI	GTCTC	2 cut(s)	162, 430
BfaI	CTAG	2 cut(s)	429, 703
BfmI	CTRYAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
BmsI	GCATC	1 cut(s)	568
BpuEI	CTTGAG	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 569
Bse1I	ACTGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	4 cut(s)	457, 517, 559, 604
BseLI	CCNNNNNNNGG	2 cut(s)	233, 569
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	233, 569
BsmAI	GTCTC	2 cut(s)	162, 430
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	384, 625
BspACI	CCGC	3 cut(s)	148, 169, 281
BspHI	TCATGA	1 cut(s)	628
BspMI	ACCTGC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	384, 625
BssNAI	GTATAC	2 cut(s)	372, 588
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	297
Bst1107I	GTATAC	2 cut(s)	372, 588
Bst4CI	ACNGT	3 cut(s)	275, 376, 592
BstACI	GRCGYC	1 cut(s)	693
BstC8I	GCNNGC	2 cut(s)	167, 691
BstF5I	GGATG	4 cut(s)	457, 517, 559, 604
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	2 cut(s)	387, 628
BstMAI	GTCTC	2 cut(s)	162, 430
BstMBI	GATC	2 cut(s)	384, 625
BstSFI	CTRYAG	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	419
BstZ17I	GTATAC	2 cut(s)	372, 588
BtgZI	GCGATG	1 cut(s)	682
BtsCI	GGATG	4 cut(s)	457, 517, 559, 604
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	381, 418
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	167, 691
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	1 cut(s)	165
CseI	GACGC	1 cut(s)	682
CviAII	CATG	2 cut(s)	462, 629
CviJI	RGCY	6 cut(s)	43, 247, 296, 432, 459, 552
CviKI_1	RGCY	6 cut(s)	43, 247, 296, 432, 459, 552
DpnI	GATC	2 cut(s)	386, 627
DpnII	GATC	2 cut(s)	384, 625
DraI	TTTAAA	1 cut(s)	67
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	465, 632
FatI	CATG	2 cut(s)	461, 628
FbaI	TGATCA	2 cut(s)	384, 625
FblI	GTMKAC	2 cut(s)	371, 587
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	4 cut(s)	464, 524, 546, 611
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	2 cut(s)	429, 703
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	433
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	2 cut(s)	465, 632
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	3 cut(s)	122, 172, 659
HphI	GGTGA	2 cut(s)	169, 373
Hpy166II	GTNNAC	2 cut(s)	372, 588
Hpy188III	TCNNGA	3 cut(s)	479, 575, 629
Hpy8I	GTNNAC	2 cut(s)	372, 588
HpyCH4III	ACNGT	3 cut(s)	275, 376, 592
HpyCH4V	TGCA	4 cut(s)	240, 312, 379, 498
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	2 cut(s)	465, 632
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	2 cut(s)	384, 625
Kzo9I	GATC	2 cut(s)	384, 625
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	179, 193, 317, 322, 338, 393, 576, 675
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	2 cut(s)	429, 703
MaeIII	GTNAC	3 cut(s)	266, 413, 644
MalI	GATC	2 cut(s)	386, 627
MboI	GATC	2 cut(s)	384, 625
MboII	GAAGA	5 cut(s)	105, 136, 494, 668, 686
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	9 cut(s)	32, 62, 69, 74, 105, 284, 341, 544, 664
MlyI	GAGTC	2 cut(s)	116, 166
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	3 cut(s)	161, 227, 316
MseI	TTAA	5 cut(s)	36, 66, 72, 348, 474
MslI	CAYNNNNRTG	1 cut(s)	273
NdeII	GATC	2 cut(s)	384, 625
NlaIII	CATG	2 cut(s)	465, 632
NmuCI	GTSAC	2 cut(s)	266, 413
OliI	CACNNNNGTG	1 cut(s)	273
PagI	TCATGA	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	659
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	434
PleI	GAGTC	2 cut(s)	116, 166
PpsI	GAGTC	2 cut(s)	116, 166
Psp124BI	GAGCTC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	5 cut(s)	36, 66, 72, 348, 474
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	2 cut(s)	384, 625
SchI	GAGTC	2 cut(s)	116, 166
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	7 cut(s)	45, 238, 311, 363, 434, 461, 554
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	9 cut(s)	32, 62, 69, 74, 105, 284, 341, 544, 664
SsiI	CCGC	3 cut(s)	148, 169, 281
SspMI	CTAG	2 cut(s)	429, 703
SstI	GAGCTC	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	275, 376, 592
TaqI	TCGA	1 cut(s)	116
TasI	AATT	9 cut(s)	32, 62, 69, 74, 105, 284, 341, 544, 664
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	5 cut(s)	36, 66, 72, 348, 474
Tru9I	TTAA	5 cut(s)	36, 66, 72, 348, 474
TscAI	CASTG	2 cut(s)	381, 418
TseFI	GTSAC	2 cut(s)	266, 413
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	2 cut(s)	266, 413
TspDTI	ATGAA	4 cut(s)	45, 75, 645, 669
TspRI	CASTG	2 cut(s)	381, 418
Van91I	CCANNNNNTGG	1 cut(s)	569
XapI	RAATTY	4 cut(s)	32, 62, 341, 544
XmiI	GTMKAC	2 cut(s)	371, 587
XspI	CTAG	2 cut(s)	429, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.