Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005132

Physical Location & Seq

Genomic Coordinates Forward (+)

5903812 .. 5904299

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1044000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGATGTCAGCAATCAATCTAATGGCAGACTACAGAATTCAAGCTTTGAGCATCCAGTAAATGGTCTTGATAACATGTATACAGTAAGAGATGTTGAGATTATACAGACAAGTGATGTTCATGAAGCAAAAGATAGTAACGAAAATGAAGATTCAAATTATTTAGAAGAATACAAATGCTGGGTATGGGAACCCCCTGAACCTCATGATCTAGAGGTTGATGGTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

78

Amino Acids

8.96

Weight (kDa)

4.09

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34260 AT1G34260 AT1G34260 AT1G34260
fragaria_vesca	FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440 FvH4_2g12440
malus_domestica	MD00G1078100.v1.1 MD10G1044000.v1.1 MD10G1044100.v1.1
prunus_persica	Prupe.8G050600_v2.0.a1
pyrus_communis	pycom05g03120 pycom05g03130 pycom10g03060 pycom10g03070 pycom10g03080
rosa_chinensis	RchiOBHm_Chr6g0272731
rosa_laevigata	RLG00000013661
rosa_multiflora	Rmu_co8449107.1_g000001 Rmu_sc0003080.1_g000001 Rmu_sc0014453.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196050
rosa_rugosa	Rorug06G0070400
rosa_samantha	Rh6AG186600 Rh6BG189900 Rh6CG188700 Rh6DG180100
rosa_wichuraiana	Rw6G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	42, 156
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	37
BccI	CCATC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	10, 52
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	208
BspHI	TCATGA	2 cut(s)	121, 205
BspLI	GGNNCC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	208
BssNAI	GTATAC	1 cut(s)	81
Bst1107I	GTATAC	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	10, 52
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	32
BstZ17I	GTATAC	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	10, 52
CciI	TCATGA	2 cut(s)	121, 205
CviAII	CATG	3 cut(s)	76, 122, 206
CviJI	RGCY	1 cut(s)	45
CviKI_1	RGCY	1 cut(s)	45
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	37
FaeI	CATG	3 cut(s)	79, 125, 209
FaiI	YATR	6 cut(s)	77, 81, 104, 123, 187, 207
FatI	CATG	3 cut(s)	75, 121, 205
FblI	GTMKAC	1 cut(s)	80
FokI	GGATG	2 cut(s)	17, 39
FspBI	CTAG	1 cut(s)	212
GsaI	CCCAGC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	79, 125, 209
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188III	TCNNGA	4 cut(s)	68, 122, 206, 212
Hpy8I	GTNNAC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	85
Hsp92II	CATG	3 cut(s)	79, 125, 209
Kzo9I	GATC	1 cut(s)	208
LpnPI	CCDG	3 cut(s)	69, 166, 210
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	161, 179
MluCI	AATT	2 cut(s)	37, 157
MnlI	CCTC	3 cut(s)	208, 213, 220
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	79, 125, 209
NlaIV	GGNNCC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	79
PagI	TCATGA	2 cut(s)	121, 205
PciI	ACATGT	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	62
PscI	ACATGT	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	208
SetI	ASST	3 cut(s)	47, 205, 219
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	37, 157
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	2 cut(s)	37, 157
TfiI	GAWTC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	110, 138, 162
Van91I	CCANNNNNTGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	37
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.