FvH4_2g15960

Protein kinase domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
13960489 .. 13963830
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15960.t1

Sequence Viewer

Length: 1659 bp
ATGGTTCAAAGTCAAACAGTTGAACCCCAAATGCTATCGTGCCGCTGCAAGACAGTGAAGAACAAGAGGACTATTATCGCTGGCCTAAATTCAGATACCTGCAGTAGAGAAATGCTGCTTGGATTGCTCACTTCTGTTGTTAAACCAGAAGACAATGTGATAGCTATTCATGTGGAAGAAACAGATGATACATTTGATCCAAACACTTTCCACATTCATGAAGATATCTGCAAGTCCAAGAAGGTAGATTTTCAAGTAAAGGTCTGCATAGGAGATTCATACATTTCTGAATTAACTTACCAAGTTAGAGTCAGCTATGCTACAATCCTCACACTTGGTTGCAGCTCTTCAGGGCTCAATGTTTCAGCTATCAGTGCTTGCCTGAAAGGATTACCTCCTTCGTGCACACTTCTGGTTATGAATAGTGTTGGAAGAATTTTGTTTCAGAGGGAGGGAACTTGCCAACAAGGTTCTGTAAAGATAGCCCGGCCCTTGCAATCTTCGCAGTCATTTTCTTCAGGGTACACCTGTTATAATCAGTCAAATACATCCCGGAAATTGCATAAGTCATTGACAATACCATCTGCTCCTCCTGTATCATCAATGCGGCGATTTACTAGAAGGGCACTCTCTTCTGCACATAAAACAGTGGAGGTTTCTGATTTTGTGGCTCAAAAACTGTTTCATAGATTGGCACTACTGGAAGCAGAAGGTTCCAGCAGGCATTTCGCCTCCCAAGAGCTTCGGTATGCAACTAACAATTTCAGCCCTGACATGGTGATTGGAGAAGGTGGACATAGCAAGGTGTATCGAGCCACTCTTGAAGATGGTAGAGGTGCAGCTGTGAAAGTCCTCAAAACCACACACCATTCAGTCAATGATCTTTTCCGCGAAGTAGATTTTCTGTCTAGTATGAATCACAAGAACATAATTCAGATAATTGGGTTCTGTGATAGTGGAGAGATGCTTGCGATTGTGTATGATCTTTTACATGGAAGCTTGAGGAGGAATTTGAGACAACTAAGGTGGAGTGAGAGGATGAAAGTTGCACTTGGTGTAGCAAAAGCTTTAGAGTACCTTCATCATTCTCACAACCCTCCCATCATTCATAGGGATGTCAAGTCTTCTAACATTCTCCTCTCCCATGATTGCGAACCAATATTGTCCGATTTTGGAGCAGCAATGGTACTTCGTCAATCTCAGCATGCAGACGTGCCATGTGATGTTGTTGGGACGTTTGGATACTTAGCCCCAGAGTACATGATGTATGGCAAGGTTGATGAGAAGATAGATGTGTACTCATATGGGGTGGTGCTTTTAGAACTCATTACTGGGAAAGAGGCTATTCAAACCGACCAGGAGATTCGAGAGAGCTTAGTACTTTGGTCTTTGCTTATTGATGTGCAGGCAAGGTCCCTACTGAGCTGTGGCATATGCGAACGTCTAATTGATCCTTACTTGTCTGAGGAGTATAACAAGGAAGAGATGGAAGTAATGATGATAGCTGCACGCCTCTGCCTTATGCATTCATCTTCTAGAAGACCAACCATGAAAACGATACTTAGGCTATTTGAGGAGCCAGATCATTGGTTAAGGATGCAGAGAGAAAGAGATGAGTTTCTGAAAGGGACTAATTCAAAAGATGAAACAGTTACTTGA

Protein Analysis

553

Amino Acids

62.07

Weight (kDa)

7.04

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 259 - 520 1.3e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 260 - 522 7.4e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
Acc36I ACCTGC 1 cut(s) 107
AccII CGCG 1 cut(s) 891
AciI CCGC 3 cut(s) 43, 607, 889
AclWI GGATC 2 cut(s) 191, 1445
AcsI RAATTY 3 cut(s) 88, 435, 1009
AcuI CTGAAG 2 cut(s) 333, 501
AdeI CACNNNGTG 1 cut(s) 1055
AfaI GTAC 6 cut(s) 524, 1076, 1188, 1259, 1298, 1380
AfiI CCNNNNNNNGG 1 cut(s) 775
AgsI TTSAA 6 cut(s) 8, 23, 254, 824, 1349, 1638
AjiI CACGTC 1 cut(s) 1213
AjnI CCWGG 1 cut(s) 1356
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 1009
Alw44I GTGCAC 1 cut(s) 403
AlwI GGATC 2 cut(s) 191, 1445
AoxI GGCC 2 cut(s) 82, 488
ApaLI GTGCAC 1 cut(s) 403
ApeKI GCWGC 6 cut(s) 45, 115, 342, 839, 1178, 1505
ApoI RAATTY 3 cut(s) 88, 435, 1009
AspS9I GGNCC 2 cut(s) 489, 1413
AsuC2I CCSGG 2 cut(s) 487, 553
AsuHPI GGTGA 1 cut(s) 790
AvaII GGWCC 1 cut(s) 1413
BaeGI GKGCMC 2 cut(s) 407, 628
BaeI ACNNNNGTAYC 2 cut(s) 514, 547
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 3 cut(s) 156, 1116, 1546
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 6 cut(s) 32, 102, 354, 851, 1190, 1492
BccI CCATC 4 cut(s) 589, 821, 1109, 1480
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 1 cut(s) 1358
BciVI GTATCC 1 cut(s) 1235
BcnI CCSGG 2 cut(s) 487, 553
BcoDI GTCTC 1 cut(s) 1009
BfaI CTAG 3 cut(s) 618, 909, 1536
BfmI CTRYAG 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 107
BfuI GTATCC 1 cut(s) 1235
BisI GCNGC 8 cut(s) 43, 46, 116, 343, 608, 840, 1179, 1506
BlsI GCNGC 8 cut(s) 44, 47, 117, 344, 609, 841, 1180, 1507
BmcAI AGTACT 1 cut(s) 1380
Bme1390I CCNGG 3 cut(s) 487, 553, 1358
Bme18I GGWCC 1 cut(s) 1413
BmgBI CACGTC 1 cut(s) 1213
BmgT120I GGNCC 2 cut(s) 489, 1413
BmiI GGNNCC 3 cut(s) 715, 1415, 1578
BmrFI CCNGG 3 cut(s) 487, 553, 1358
BmrI ACTGGG 1 cut(s) 1341
BmsI GCATC 2 cut(s) 954, 1587
BmuI ACTGGG 1 cut(s) 1341
BpiI GAAGAC 3 cut(s) 156, 1116, 1546
BpuEI CTTGAG 1 cut(s) 1021
BpuMI CCSGG 2 cut(s) 487, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 705, 1336
Bse3DI GCAATG 1 cut(s) 1188
BseBI CCWGG 1 cut(s) 1358
BseGI GGATG 4 cut(s) 548, 1044, 1120, 1602
BseLI CCNNNNNNNGG 1 cut(s) 775
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 3 cut(s) 1214, 1412, 1455
BseNI ACTGG 2 cut(s) 705, 1336
BseRI GAGGAG 5 cut(s) 579, 1018, 1127, 1481, 1589
BseSI GKGCMC 2 cut(s) 407, 628
BseXI GCAGC 6 cut(s) 32, 102, 354, 851, 1190, 1492
BsgI GTGCAG 4 cut(s) 621, 858, 1424, 1491
Bsh1236I CGCG 1 cut(s) 891
BshFI GGCC 2 cut(s) 84, 490
BsiHKAI GWGCWC 1 cut(s) 407
BsiSI CCGG 2 cut(s) 487, 553
BslFI GGGAC 3 cut(s) 1246, 1399, 1642
BslI CCNNNNNNNGG 1 cut(s) 775
BsmAI GTCTC 1 cut(s) 1009
BsmFI GGGAC 3 cut(s) 1246, 1399, 1642
BsmI GAATGC 1 cut(s) 1525
BsnI GGCC 2 cut(s) 84, 490
Bsp1286I GDGCHC 3 cut(s) 357, 407, 628
Bsp143I GATC 5 cut(s) 196, 880, 982, 1450, 1582
BspACI CCGC 3 cut(s) 43, 607, 889
BspANI GGCC 2 cut(s) 84, 490
BspCNI CTCAG 3 cut(s) 1213, 1413, 1456
BspFNI CGCG 1 cut(s) 891
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 715, 1415, 1578
BspMAI CTGCAG 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 2 cut(s) 191, 1445
BspQI GCTCTTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 1188
BsrI ACTGG 2 cut(s) 705, 1336
BssMI GATC 5 cut(s) 196, 880, 982, 1450, 1582
Bst2UI CCWGG 1 cut(s) 1358
Bst4CI ACNGT 5 cut(s) 19, 55, 649, 681, 1651
Bst6I CTCTTC 3 cut(s) 352, 637, 1476
BstC8I GCNNGC 7 cut(s) 82, 379, 722, 969, 1206, 1407, 1510
BstDEI CTNAG 7 cut(s) 1022, 1200, 1246, 1375, 1421, 1464, 1562
BstF5I GGATG 4 cut(s) 548, 1044, 1120, 1602
BstFNI CGCG 1 cut(s) 891
BstKTI GATC 5 cut(s) 199, 883, 985, 1453, 1585
BstMAI GTCTC 1 cut(s) 1009
BstMBI GATC 5 cut(s) 196, 880, 982, 1450, 1582
BstMWI GCNNNNNNNGC 3 cut(s) 124, 374, 502
BstNI CCWGG 1 cut(s) 1358
BstNSI RCATGY 1 cut(s) 1208
BstSCI CCNGG 3 cut(s) 485, 551, 1356
BstSFI CTRYAG 1 cut(s) 100
BstSLI GKGCMC 2 cut(s) 407, 628
BstUI CGCG 1 cut(s) 891
BstV1I GCAGC 6 cut(s) 32, 102, 354, 851, 1190, 1492
BstV2I GAAGAC 3 cut(s) 156, 1116, 1546
BstXI CCANNNNNNTGG 1 cut(s) 1587
BsuI GTATCC 1 cut(s) 1235
BsuRI GGCC 2 cut(s) 84, 490
BtrI CACGTC 1 cut(s) 1213
BtsCI GGATG 4 cut(s) 548, 1044, 1120, 1602
BtsIMutI CAGTG 3 cut(s) 60, 379, 654
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 7 cut(s) 82, 379, 722, 969, 1206, 1407, 1510
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 489, 1413
Csp6I GTAC 6 cut(s) 523, 1075, 1187, 1258, 1297, 1379
CspCI CAANNNNNGTGG 2 cut(s) 1007, 1042
CviAII CATG 9 cut(s) 170, 218, 775, 992, 1145, 1205, 1218, 1261, 1549
CviQI GTAC 6 cut(s) 523, 1075, 1187, 1258, 1297, 1379
DdeI CTNAG 7 cut(s) 1022, 1200, 1246, 1375, 1421, 1464, 1562
DpnI GATC 5 cut(s) 198, 882, 984, 1452, 1584
DpnII GATC 5 cut(s) 196, 880, 982, 1450, 1582
DraIII CACNNNGTG 1 cut(s) 1055
Eam1104I CTCTTC 3 cut(s) 352, 637, 1476
EarI CTCTTC 3 cut(s) 352, 637, 1476
Eco24I GRGCYC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 1413
Eco57I CTGAAG 2 cut(s) 333, 501
EcoO109I RGGNCCY 1 cut(s) 1413
EcoRII CCWGG 1 cut(s) 1356
EcoRV GATATC 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 1527
EcoT38I GRGCYC 1 cut(s) 357
FaeI CATG 9 cut(s) 173, 221, 778, 995, 1148, 1208, 1221, 1264, 1552
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 3 cut(s) 1246, 1399, 1642
FatI CATG 9 cut(s) 169, 217, 774, 991, 1144, 1204, 1217, 1260, 1548
FauNDI CATATG 2 cut(s) 1303, 1433
Fnu4HI GCNGC 8 cut(s) 43, 46, 116, 343, 608, 840, 1179, 1506
FokI GGATG 4 cut(s) 535, 1051, 1127, 1609
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 8 cut(s) 43, 46, 116, 343, 608, 840, 1179, 1506
FspBI CTAG 3 cut(s) 618, 909, 1536
GluI GCNGC 8 cut(s) 43, 46, 116, 343, 608, 840, 1179, 1506
HaeIII GGCC 2 cut(s) 84, 490
HapII CCGG 2 cut(s) 487, 553
Hin1II CATG 9 cut(s) 173, 221, 778, 995, 1148, 1208, 1221, 1264, 1552
HindIII AAGCTT 2 cut(s) 997, 1065
HinfI GANTC 4 cut(s) 275, 309, 916, 1363
HpaII CCGG 2 cut(s) 487, 553
HphI GGTGA 1 cut(s) 790
Hpy166II GTNNAC 4 cut(s) 405, 525, 794, 1297
Hpy188I TCNGA 8 cut(s) 94, 289, 447, 661, 936, 1168, 1465, 1623
Hpy188III TCNNGA 4 cut(s) 218, 821, 1367, 1536
Hpy8I GTNNAC 4 cut(s) 405, 525, 794, 1297
HpyAV CCTTC 6 cut(s) 235, 408, 615, 704, 782, 1088
HpyCH4III ACNGT 5 cut(s) 19, 55, 649, 681, 1651
HpyCH4IV ACGT 3 cut(s) 1212, 1235, 1441
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 374, 502
HpyF3I CTNAG 7 cut(s) 1022, 1200, 1246, 1375, 1421, 1464, 1562
HpySE526I ACGT 3 cut(s) 1212, 1235, 1441
Hsp92II CATG 9 cut(s) 173, 221, 778, 995, 1148, 1208, 1221, 1264, 1552
Kzo9I GATC 5 cut(s) 196, 880, 982, 1450, 1582
LguI GCTCTTC 1 cut(s) 352
LmnI GCTCC 3 cut(s) 592, 1175, 1576
Lsp1109I GCAGC 6 cut(s) 32, 102, 354, 851, 1190, 1492
LweI GCATC 2 cut(s) 954, 1587
MaeI CTAG 3 cut(s) 618, 909, 1536
MaeII ACGT 3 cut(s) 1212, 1235, 1441
MaeIII GTNAC 1 cut(s) 1651
MalI GATC 5 cut(s) 198, 882, 984, 1452, 1584
MboI GATC 5 cut(s) 196, 880, 982, 1450, 1582
MhlI GDGCHC 3 cut(s) 357, 407, 628
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 409
Mph1103I ATGCAT 1 cut(s) 1527
MseI TTAA 3 cut(s) 141, 293, 1592
MslI CAYNNNNRTG 2 cut(s) 216, 1113
MspA1I CMGCKG 2 cut(s) 45, 842
MspI CCGG 2 cut(s) 487, 553
MspR9I CCNGG 3 cut(s) 487, 553, 1358
Mva1269I GAATGC 1 cut(s) 1525
MvaI CCWGG 1 cut(s) 1358
MvnI CGCG 1 cut(s) 891
MwoI GCNNNNNNNGC 3 cut(s) 124, 374, 502
NciI CCSGG 2 cut(s) 487, 553
NdeI CATATG 2 cut(s) 1303, 1433
NdeII GATC 5 cut(s) 196, 880, 982, 1450, 1582
NlaIII CATG 9 cut(s) 173, 221, 778, 995, 1148, 1208, 1221, 1264, 1552
NlaIV GGNNCC 3 cut(s) 715, 1415, 1578
NsiI ATGCAT 1 cut(s) 1527
NspI RCATGY 1 cut(s) 1208
PaeI GCATGC 1 cut(s) 1208
PagI TCATGA 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 352
PctI GAATGC 1 cut(s) 1525
PfeI GAWTC 3 cut(s) 275, 916, 1363
PfoI TCCNGGA 1 cut(s) 551
PkrI GCNGC 8 cut(s) 44, 47, 117, 344, 609, 841, 1180, 1507
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PpuMI RGGWCCY 1 cut(s) 1413
PsiI TTATAA 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 1413
Psp6I CCWGG 1 cut(s) 1356
PspGI CCWGG 1 cut(s) 1356
PspN4I GGNNCC 3 cut(s) 715, 1415, 1578
PspPI GGNCC 2 cut(s) 489, 1413
PspPPI RGGWCCY 1 cut(s) 1413
PstI CTGCAG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 6 cut(s) 524, 1076, 1188, 1259, 1298, 1380
RsaNI GTAC 6 cut(s) 523, 1075, 1187, 1258, 1297, 1379
RseI CAYNNNNRTG 2 cut(s) 216, 1113
SapI GCTCTTC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 141, 293, 1592
SatI GCNGC 8 cut(s) 43, 46, 116, 343, 608, 840, 1179, 1506
Sau3AI GATC 5 cut(s) 196, 880, 982, 1450, 1582
Sau96I GGNCC 2 cut(s) 489, 1413
ScaI AGTACT 1 cut(s) 1380
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 3 cut(s) 487, 553, 1358
SduI GDGCHC 3 cut(s) 357, 407, 628
SfaNI GCATC 2 cut(s) 954, 1587
SfcI CTRYAG 1 cut(s) 100
SinI GGWCC 1 cut(s) 1413
SmiMI CAYNNNNRTG 2 cut(s) 216, 1113
SmlI CTYRAG 1 cut(s) 1000
SmoI CTYRAG 1 cut(s) 1000
SphI GCATGC 1 cut(s) 1208
SsiI CCGC 3 cut(s) 43, 607, 889
SspI AATATT 1 cut(s) 1161
SspMI CTAG 3 cut(s) 618, 909, 1536
StyD4I CCNGG 3 cut(s) 485, 551, 1356
TaaI ACNGT 5 cut(s) 19, 55, 649, 681, 1651
TaiI ACGT 3 cut(s) 1215, 1238, 1444
TaqI TCGA 2 cut(s) 811, 1366
TatI WGTACW 3 cut(s) 1257, 1296, 1378
TauI GCSGC 2 cut(s) 45, 610
TfiI GAWTC 3 cut(s) 275, 916, 1363
Tru1I TTAA 3 cut(s) 141, 293, 1592
Tru9I TTAA 3 cut(s) 141, 293, 1592
TscAI CASTG 3 cut(s) 60, 379, 654
TseI GCWGC 6 cut(s) 45, 115, 342, 839, 1178, 1505
TspRI CASTG 3 cut(s) 60, 379, 654
VneI GTGCAC 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 1413
XapI RAATTY 3 cut(s) 88, 435, 1009
XbaI TCTAGA 1 cut(s) 1535
XceI RCATGY 1 cut(s) 1208
XspI CTAG 3 cut(s) 618, 909, 1536
ZrmI AGTACT 1 cut(s) 1380
Zsp2I ATGCAT 1 cut(s) 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.